cluster # 2354

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Anopheles gambiae
cluster # 2354 cluster # 2354 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2354#0 length = 735 sequences # 1

consensus_2354#1 length = 473 sequences # 1

consensusID : consensus_2354#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 735
fasta sequence

                              [ACCGACCGGCGACCAACTCGGAGCAGCAGCAGCAGCAGCCGAACCCGATCCAGAACATCGTGCAGGGCGTGCAGAACTTCTTCCGGCCAAGCACGGCTGCCCCGGCCACCCAGTCCGAGGGTACGGCCAACGCACCCGCCGATACGCCCCAGGACACGCCAGCCGCTTAAGCCACAAACACAACACAACACTCACGCACACACACAAAAGCCATATACAGACACGCAAAAAACGCTAGAGAGAGAGGGAGGGAGAGATGCACAATGCACAAGTGGGCGCATCAAGTGTTGATTCCTTTCTTTTTCTAAGGAATGTAACTACTTGCACTGCACCCCGTCCCCTCAGTAGGGGTTCGTCGCTTCCCTTTTTAAGACTTTTCTTTTTTCCATTTTAAAACGCAACAAAACAGCATAAGAACGCCGTTCGAAGAAAACTGCAAAAAAACGCCATCCGCGGCCAAACCGGCAGGGTGCGGACCGACACAGACAGCAAGGCGCGATGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAAGGGGGTGAGAGACACATTTCCTAACTTATTTATTTAAACGCACACGCACCGTCGGCAGTCGGTCCCGACACGGCGGCCAGGGGGTGGATCCCCGGTTGGGCGGCAGTTTTTCTTTCGGTTTTTTATTTTTATTTTTCTTAATTTATTGCATTGTGATTCTGTGAGCGGTAGAAGGAAAAAGGGGAG]

[+] EMBL BX621546             [ACCGACCGGCGACCAACTCGGAGCAGCAGCAGCAGCAGCCGAACCCGATCCAGAACATCGTGCAGGGCGTGCAGAACTTCTTCCGGCCAAGCACGGCTGCCCCGGCCACCCAGTCCGAGGGTACGGCCAACGCACCCGCCGATACGCCCCAGGACACGCCAGCCGCTTAAGCCACAAACACAACACAACACTCACGCACACACACAAAAGCCATATACAGACACGCAAAAAACGCTAGAGAGAGAGGGAGGGAGAGATGCACAATGCACAAGTGGGCGCATCAAGTGTTGATTCCTTTCTTTTTCTAAGGAATGTAACTACTTGCACTGCACCCCGTCCCCTCAGTAGGGGTTCGTCGCTTCCCTTTTTAAGACTTTTCTTTTTTCCATTTTAAAACGCAACAAAACAGCATAAGAACGCCGTTCGAAGAAAACTGCAAAAAAACGCCATCCGCGGCCAAACCGGCAGGGTGCGGACCGACACAGACAGCAAGGCGCGATGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAAGGGGGTGAGAGACACATTTCCTAACTTATTTATTTAAACGCACACGCACCGTCGGCAGTCGGTCCCGACACGGCGGCCAGGGGGTGGATCCCCGGTTGGGCGGCAGTTTTTCTTTCGGTTTTTTATTTTTATTTTTCTTAATTTATTGCATTGTGATTCTGTGAGCGGTAGAAGGAAAAAGGGGAG]




>consensus_2354#0
ACCGACCGGCGACCAACTCGGAGCAGCAGCAGCAGCAGCCGAACCCGATCCAGAACATCG
TGCAGGGCGTGCAGAACTTCTTCCGGCCAAGCACGGCTGCCCCGGCCACCCAGTCCGAGG
GTACGGCCAACGCACCCGCCGATACGCCCCAGGACACGCCAGCCGCTTAAGCCACAAACA
CAACACAACACTCACGCACACACACAAAAGCCATATACAGACACGCAAAAAACGCTAGAG
AGAGAGGGAGGGAGAGATGCACAATGCACAAGTGGGCGCATCAAGTGTTGATTCCTTTCT
TTTTCTAAGGAATGTAACTACTTGCACTGCACCCCGTCCCCTCAGTAGGGGTTCGTCGCT
TCCCTTTTTAAGACTTTTCTTTTTTCCATTTTAAAACGCAACAAAACAGCATAAGAACGC
CGTTCGAAGAAAACTGCAAAAAAACGCCATCCGCGGCCAAACCGGCAGGGTGCGGACCGA
CACAGACAGCAAGGCGCGATGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGCGAGAAGGGGGTGAGAGACACATTTCCTAACTTATTTATTTAAACGCACACGCACCG
TCGGCAGTCGGTCCCGACACGGCGGCCAGGGGGTGGATCCCCGGTTGGGCGGCAGTTTTT
CTTTCGGTTTTTTATTTTTATTTTTCTTAATTTATTGCATTGTGATTCTGTGAGCGGTAG
AAGGAAAAAGGGGAG

consensusID : consensus_2354#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [AGAATTGCCCCNGGTTTAAGCAGGTGCAGAACGCGGTCGGTCGGTGTCAATCGACCGGCGACAACTCGGAGCAGCAGCAGCAGCAGCGAACCGATCCAGAACATCGTGCAGGCGTGCAGAACTTCTTCCGGCCAAGCACGGCTGCCCGGCACCAGTCCGAGGGTACGGGCAACGCACCCGCGATACGCCCCAGGACACGCCAGCGTTAAGCCACAAAAAAAAAACTCACGCACACACACAAAAGGCATATACAGACACNTCAACAAAACGCTAGAGAGAGAGGGAGGGAGAGATGCNCAATGCACAAGTGGGGGCATCCAAGGTGTTGATTCCTTTCTTTTTCTAAGGAATGTAACTACTTGCACATGGACCCCGGTCCCTCAGTAAGGGTTCGNCGCTATCCCTTTTAAGACCTTATCCTTTGTTTCCATTTTTAAAACGCAACAAACACGGAATAAGAACGCGTTCGAAGA]

[+] EMBL AL697580             [AGAATTGCCCCNGGTTTAAGCAGGTGCAGAACGCGGTCGGTCGGTGTCAATCGACCGGCGACAACTCGGAGCAGCAGCAGCAGCAGCGAACCGATCCAGAACATCGTGCAGGCGTGCAGAACTTCTTCCGGCCAAGCACGGCTGCCCGGCACCAGTCCGAGGGTACGGGCAACGCACCCGCGATACGCCCCAGGACACGCCAGCGTTAAGCCACAAAAAAAAAACTCACGCACACACACAAAAGGCATATACAGACACNTCAACAAAACGCTAGAGAGAGAGGGAGGGAGAGATGCNCAATGCACAAGTGGGGGCATCCAAGGTGTTGATTCCTTTCTTTTTCTAAGGAATGTAACTACTTGCACATGGACCCCGGTCCCTCAGTAAGGGTTCGNCGCTATCCCTTTTAAGACCTTATCCTTTGTTTCCATTTTTAAAACGCAACAAACACGGAATAAGAACGCGTTCGAAGA]




>consensus_2354#1
AGAATTGCCCCNGGTTTAAGCAGGTGCAGAACGCGGTCGGTCGGTGTCAATCGACCGGCG
ACAACTCGGAGCAGCAGCAGCAGCAGCGAACCGATCCAGAACATCGTGCAGGCGTGCAGA
ACTTCTTCCGGCCAAGCACGGCTGCCCGGCACCAGTCCGAGGGTACGGGCAACGCACCCG
CGATACGCCCCAGGACACGCCAGCGTTAAGCCACAAAAAAAAAACTCACGCACACACACA
AAAGGCATATACAGACACNTCAACAAAACGCTAGAGAGAGAGGGAGGGAGAGATGCNCAA
TGCACAAGTGGGGGCATCCAAGGTGTTGATTCCTTTCTTTTTCTAAGGAATGTAACTACT
TGCACATGGACCCCGGTCCCTCAGTAAGGGTTCGNCGCTATCCCTTTTAAGACCTTATCC
TTTGTTTCCATTTTTAAAACGCAACAAACACGGAATAAGAACGCGTTCGAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2354#0      -------------------------------------------------ACCGACCGGCG 11
consensus_2354#1      AGAATTGCCCCNGGTTTAAGCAGGTGCAGAACGCGGTCGGTCGGTGTCAATCGACCGGCG 60
                                                                       * *********

consensus_2354#0      ACCAACTCGGAGCAGCAGCAGCAGCAGCCGAACCCGATCCAGAACATCGTGCAGGGCGTG 71
consensus_2354#1      AC-AACTCGGAGCAGCAGCAGCAGCAGCGAA--CCGATCCAGAACATCGTGCAGG-CGTG 116
                      ** *************************  *  ********************** ****

consensus_2354#0      CAGAACTTCTTCCGGCCAAGCACGGCTGCCCCGGCCACCCAGTCCGAGGGTACGGCCAAC 131
consensus_2354#1      CAGAACTTCTTCCGGCCAAGCACGGCTGCCC--GGCACC-AGTCCGAGGGTACGGGCAAC 173
                      *******************************  * **** *************** ****

consensus_2354#0      GCACCCGCCGATACGCCCCAGGACACGCCAGCCGCTTAAGCCACAAACACAACACAACAC 191
consensus_2354#1      GCACCCGC-GATACGCCCCAGGACACGCCAGC--GTTAAGCCACAAAAAAAA-----AAC 225
                      ******** ***********************   ************ * **      **

consensus_2354#0      TCACGCACACACACAAAAGCCATATACAGACACGCAAA--AAACGCTAGAGAGAGAGGGA 249
consensus_2354#1      TCACGCACACACACAAAAGGCATATACAGACACNTCAACAAAACGCTAGAGAGAGAGGGA 285
                      ******************* *************   **  ********************

consensus_2354#0      GGGAGAGATGCACAATGCACAAGTGGGCGCATC--AAGTGTTGATTCCTTTCTTTTTCTA 307
consensus_2354#1      GGGAGAGATGCNCAATGCACAAGTGGGGGCATCCAAGGTGTTGATTCCTTTCTTTTTCTA 345
                      *********** *************** *****  * ***********************

consensus_2354#0      AGGAATGTAACTACTTGCAC-TGCACCCCGTCCCCTCAGTAGGGGTTCGTCGCTTCCCTT 366
consensus_2354#1      AGGAATGTAACTACTTGCACATGGACCCCGGTCCCTCAGTAAGGGTTCGNCGCTATCCCT 405
                      ******************** ** ******  ********* ******* ****  ** *

consensus_2354#0      TTTAAGACTTT---TCTTTTTTCCATTTT-AAAACGCAACAAA-ACAGCATAAGAACGCC 421
consensus_2354#1      TTTAAGACCTTATCCTTTGTTTCCATTTTTAAAACGCAACAAACACGGAATAAGAACGC- 464
                      ******** **     ** ********** ************* ** * ********** 

consensus_2354#0      GTTCGAAGAAAACTGCAAAAAAACGCCATCCGCGGCCAAACCGGCAGGGTGCGGACCGAC 481
consensus_2354#1      GTTCGAAGA--------------------------------------------------- 473
                      *********                                                   

consensus_2354#0      ACAGACAGCAAGGCGCGATGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 541
consensus_2354#1      ------------------------------------------------------------
                                                                                  

consensus_2354#0      AGCGAGAAGGGGGTGAGAGACACATTTCCTAACTTATTTATTTAAACGCACACGCACCGT 601
consensus_2354#1      ------------------------------------------------------------
                                                                                  

consensus_2354#0      CGGCAGTCGGTCCCGACACGGCGGCCAGGGGGTGGATCCCCGGTTGGGCGGCAGTTTTTC 661
consensus_2354#1      ------------------------------------------------------------
                                                                                  

consensus_2354#0      TTTCGGTTTTTTATTTTTATTTTTCTTAATTTATTGCATTGTGATTCTGTGAGCGGTAGA 721
consensus_2354#1      ------------------------------------------------------------
                                                                                  

consensus_2354#0      AGGAAAAAGGGGAG 735
consensus_2354#1      --------------