cluster # 2381

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Anopheles gambiae
cluster # 2381 cluster # 2381 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2381#0 length = 733 sequences # 1

consensus_2381#1 length = 699 sequences # 1

consensusID : consensus_2381#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 733
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGATGATTTGAGTATTAAACTGAACCGAACCAATAGGAACGTTTTCTTTTCTGTCTGTCAGTCTCTCGCAACTCTCTTCTCTCTCTCTCTATTTCGCTTTCTTAGTGGGGGCTAGCGGGAGTATGTCTTTGAGAAGAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGAAAGGATGGGTGCTTGATAGCAACCGGGAACCGGGAGTGAAGACACTTTTTCATAGCAAGCAAAGCAAACCCATTAGATAGCCATAGGGAAATTCTACCGGCGGGCAAAATAATATATATACCCTGGGGCAAGGCTTTGGCGGGTGGGGGGATGAGAATGATTTCCCCCACCGCTTTCACTTTACTACCTTAACCTTAACCTTAACCATCAAAACTAAGAAACAGGGGAATGGCATTCGATATTAAAATGCGAGATGGAGCAGAACCGCTGTGTTACCAGTTACTATAATACGGGAGACATAGCAGAAAGGGAAGGAATAGGGAAGGAAGGCTTTCATGGTAGCGAAGCACAACACTGCAATTAAGCGACTACTACTACTACTACTACTCCTACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAAAGAGCAACAGAAGTAACCCCACTAATCCTACCATCTAGAACTTCTCTA]

[+] EMBL BM638181             [CCGCCCACGCGTCCGCCCACGCGTCCGGATGATTTGAGTATTAAACTGAACCGAACCAATAGGAACGTTTTCTTTTCTGTCTGTCAGTCTCTCGCAACTCTCTTCTCTCTCTCTCTATTTCGCTTTCTTAGTGGGGGCTAGCGGGAGTATGTCTTTGAGAAGAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGAAAGGATGGGTGCTTGATAGCAACCGGGAACCGGGAGTGAAGACACTTTTTCATAGCAAGCAAAGCAAACCCATTAGATAGCCATAGGGAAATTCTACCGGCGGGCAAAATAATATATATACCCTGGGGCAAGGCTTTGGCGGGTGGGGGGATGAGAATGATTTCCCCCACCGCTTTCACTTTACTACCTTAACCTTAACCTTAACCATCAAAACTAAGAAACAGGGGAATGGCATTCGATATTAAAATGCGAGATGGAGCAGAACCGCTGTGTTACCAGTTACTATAATACGGGAGACATAGCAGAAAGGGAAGGAATAGGGAAGGAAGGCTTTCATGGTAGCGAAGCACAACACTGCAATTAAGCGACTACTACTACTACTACTACTCCTACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAAAGAGCAACAGAAGTAACCCCACTAATCCTACCATCTAGAACTTCTCTA]




>consensus_2381#0
CCGCCCACGCGTCCGCCCACGCGTCCGGATGATTTGAGTATTAAACTGAACCGAACCAAT
AGGAACGTTTTCTTTTCTGTCTGTCAGTCTCTCGCAACTCTCTTCTCTCTCTCTCTATTT
CGCTTTCTTAGTGGGGGCTAGCGGGAGTATGTCTTTGAGAAGAGAGAGAGAGAGATAGAG
AGAGAGAGAGAGAGATAGAGAGAGAGAGAAAGGATGGGTGCTTGATAGCAACCGGGAACC
GGGAGTGAAGACACTTTTTCATAGCAAGCAAAGCAAACCCATTAGATAGCCATAGGGAAA
TTCTACCGGCGGGCAAAATAATATATATACCCTGGGGCAAGGCTTTGGCGGGTGGGGGGA
TGAGAATGATTTCCCCCACCGCTTTCACTTTACTACCTTAACCTTAACCTTAACCATCAA
AACTAAGAAACAGGGGAATGGCATTCGATATTAAAATGCGAGATGGAGCAGAACCGCTGT
GTTACCAGTTACTATAATACGGGAGACATAGCAGAAAGGGAAGGAATAGGGAAGGAAGGC
TTTCATGGTAGCGAAGCACAACACTGCAATTAAGCGACTACTACTACTACTACTACTCCT
ACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTACACAAACACGC
ACACAGACACAACACAACAACAGAAAGAGCAACAGAAGTAACCCCACTAATCCTACCATC
TAGAACTTCTCTA

consensusID : consensus_2381#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 699
fasta sequence

                              [CCGCCCACGCGTCCGCACATATACAACAAGCACCATACAAGAATCGAGCAAAATCGAAACAATTGAAACATGAATCAAACGTATTAATTTGGCCTTTCTTCCCATAACTCATCAGCCAAGCCCCTTCCCCCCAGTTTTTACGCGTGTGTGTGTGTGTGTGTGTGATGCAGAACAATCTTTAGTAATGTATTTGCGAAAACAAAAGCCACAATAGAGTACCGGATCCATACACCAGGAGCGAATGAATATTTAAATTACAAAACTCAGCAGCACAAAAAAACACACTCACATACACACACACAACAAAGAAGCAAGCTAAGAAATGTACTAAAAACTATTGACAGAAACTCTAATTAAATGCAAAAAAATAATACAAGTTTGGGTTGTGATGGAATCGACGACACTCATGCACCGAGAAACATGGAGAAGAAAAGGTGGCCAATGAGGAGAATCAACATAGGGGGAAAAAGGGAATGCACGTGCGAGAGTGTATAAATATATAAAACACAATACACGGATTTGTTGATTGCGGACAGTAGAGTAGTAGCCGCTGCTAACAAACTAACCAGAGCGCGGACGACGTCCCAGGAACGTTCTTAAAAGATAGAAAGGTCTATTTTTAGTGCATATTGTAGCTGATGATTTGAGTATTAAACTGAACCGAACCAATAGGAACGTTTTCTTTTCTGTCTGTCAGTC]

[+] EMBL BM576922             [CCGCCCACGCGTCCGCACATATACAACAAGCACCATACAAGAATCGAGCAAAATCGAAACAATTGAAACATGAATCAAACGTATTAATTTGGCCTTTCTTCCCATAACTCATCAGCCAAGCCCCTTCCCCCCAGTTTTTACGCGTGTGTGTGTGTGTGTGTGTGATGCAGAACAATCTTTAGTAATGTATTTGCGAAAACAAAAGCCACAATAGAGTACCGGATCCATACACCAGGAGCGAATGAATATTTAAATTACAAAACTCAGCAGCACAAAAAAACACACTCACATACACACACACAACAAAGAAGCAAGCTAAGAAATGTACTAAAAACTATTGACAGAAACTCTAATTAAATGCAAAAAAATAATACAAGTTTGGGTTGTGATGGAATCGACGACACTCATGCACCGAGAAACATGGAGAAGAAAAGGTGGCCAATGAGGAGAATCAACATAGGGGGAAAAAGGGAATGCACGTGCGAGAGTGTATAAATATATAAAACACAATACACGGATTTGTTGATTGCGGACAGTAGAGTAGTAGCCGCTGCTAACAAACTAACCAGAGCGCGGACGACGTCCCAGGAACGTTCTTAAAAGATAGAAAGGTCTATTTTTAGTGCATATTGTAGCTGATGATTTGAGTATTAAACTGAACCGAACCAATAGGAACGTTTTCTTTTCTGTCTGTCAGTC]




>consensus_2381#1
CCGCCCACGCGTCCGCACATATACAACAAGCACCATACAAGAATCGAGCAAAATCGAAAC
AATTGAAACATGAATCAAACGTATTAATTTGGCCTTTCTTCCCATAACTCATCAGCCAAG
CCCCTTCCCCCCAGTTTTTACGCGTGTGTGTGTGTGTGTGTGTGATGCAGAACAATCTTT
AGTAATGTATTTGCGAAAACAAAAGCCACAATAGAGTACCGGATCCATACACCAGGAGCG
AATGAATATTTAAATTACAAAACTCAGCAGCACAAAAAAACACACTCACATACACACACA
CAACAAAGAAGCAAGCTAAGAAATGTACTAAAAACTATTGACAGAAACTCTAATTAAATG
CAAAAAAATAATACAAGTTTGGGTTGTGATGGAATCGACGACACTCATGCACCGAGAAAC
ATGGAGAAGAAAAGGTGGCCAATGAGGAGAATCAACATAGGGGGAAAAAGGGAATGCACG
TGCGAGAGTGTATAAATATATAAAACACAATACACGGATTTGTTGATTGCGGACAGTAGA
GTAGTAGCCGCTGCTAACAAACTAACCAGAGCGCGGACGACGTCCCAGGAACGTTCTTAA
AAGATAGAAAGGTCTATTTTTAGTGCATATTGTAGCTGATGATTTGAGTATTAAACTGAA
CCGAACCAATAGGAACGTTTTCTTTTCTGTCTGTCAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2381#0      CCGCCCACGCGTCCGCCCACGCGTCC---GGATGATTTGAGTATTAAACTGAACCGAACC 57
consensus_2381#1      CCGCCCACGCGTCCGCACATATACAACAAGCACCATACAAGAATCGAGCAAAATCGAAAC 60
                      **************** **          * *  **   ** **  * *  ** **** *

consensus_2381#0      AATAGGAACGTTT-TCTTTTCTGTCTGTCAGTCTCTCGCAACTCTCTTCTCTCTCTCTCT 116
consensus_2381#1      AATTGAAACATGAATCAAACGTATTAATTTGGC-CTTTCTTCCCATAACTCATCAGCCAA 119
                      *** * *** *   **     * *   *  * * **  *  * *    ***     *   

consensus_2381#0      ATTTCGCTTTCTTAGTGGGGGCTAGCGGGAGTATGTCTTTGAGAAGAG-AGAGAGAGAGA 175
consensus_2381#1      GCCCCTTCCCCCCAGTTTTTACGCGTGTGTGTGTGTGTGTGTGTGATGCAGAACAATCTT 179
                          *     *  ***     *  * * * ** *** * ** *    * ***   *    

consensus_2381#0      TAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGAAAGGATGGGTGCTTGATAGCAACCGG 235
consensus_2381#1      TAGTAATGTATTTGCGAAAACAAAAGCCACAATAGAGTACCGGATCCATACACCAGGAGC 239
                      ***  *   *       * * * *       * * ** *  **  *   * * **   * 

consensus_2381#0      GAACCGGGAGTGAAGACACTTTTTCATAGCAAGCAAAGCAAACCCATTAGATAGCCATAG 295
consensus_2381#1      GAATGAATATTTAAATTACAAAA-CTCAGCAGCACAAAAAAACACACTC-ACATACACAC 297
                      ***     * * **   **     *  ****    **  **** ** *  * *  ** * 

consensus_2381#0      GGAAATTCTACCGGCGGGCAAAATAATATAT---ATACCCTGGGGCAAGGCTTTGGCGGG 352
consensus_2381#1      ACACAACAAAGAAGCAAGCTAAGAAATGTACTAAAAACTATTGACAGAAACTCTAAT--- 354
                        * *    *   **  ** **  *** **    * **  * *    *  ** *      

consensus_2381#0      TGGGGGGATGAGAATGATTTCCCCCACCGCTTTCACTTTACTACCTTAACCTTAACCTTA 412
consensus_2381#1      TAAATGCAAAAAAATAATACAAGTTTGGGTTGTGATGGAATCGACGACACTCATGCACCG 414
                      *    * *  * *** **          * * * *    *    *   **     *    

consensus_2381#0      ACCATCAAAACTAAGAAACAGGGGAATGGCATTCGATATTAAAATGCGAGATGGAGCAGA 472
consensus_2381#1      AGAAACATGGAGAAGAAA-AGGTGGCCAATGAGGAGAATCAACATAGGGGGAAAAAGGGA 473
                      *  * **     ****** *** *             ** ** **  * *    *   **

consensus_2381#0      ACCGCTGTGTTACCAGTTACTATAATACGGGAGACATAGCAGAAAGGGAAGGAATAGGGA 532
consensus_2381#1      ATGCACGTGCGAGAGTGTATAAATATATAAAACACAATACACGGATTTGTTGATTGCGGA 533
                      *     ***  *     **  *  ***    * ***   **   *      ** *  ***

consensus_2381#0      AGGAAGGCTTTCATGGTAGCGAAGCACAACACTGCAATTA-AGCGACTACTAC-TACTAC 590
consensus_2381#1      CAGTAGA-----GTAGTAGCCGCTGCTAACAAACTAACCAGAGCGCGGACGACGTCCCAG 588
                        * **       * *****       ****    **  * ****   ** ** * * * 

consensus_2381#0      TACTACTCCTACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTAC 650
consensus_2381#1      GAACGTTCTTAA-AAGATAGAAAGGTCTATTTTTAGTGCATATTGTAGCTGATGATTTGA 647
                       *    ** **  *  *   * *   *   *  ** * **  *  **       ** *  

consensus_2381#0      ACAAACACGCACACAGACACAACACAACAACAGAAAGAGCAACAGAAGTAACCCCACTAA 710
consensus_2381#1      GTA-----TTAAACTGAACCGA---ACCAATAGGAACGTTTTCTTTTCTG--TCTGTCAG 697
                        *       * ** **  * *   * *** ** **      *     *    *    * 

consensus_2381#0      TCCTACCATCTAGAACTTCTCTA 733
consensus_2381#1      TC--------------------- 699
                      **