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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence
[ATCTTTCCTTATCTGCTCGAGCAGGTGGCAATACGCGGCATTTTCTACCTGTACGCCGCCACGTGCTTTGCTGGAGTGGCATACATCTATTGCTACGTACCGGAAACGTATGGCAAGAGCTTTGCCGATATTGAACGTTTCTTTACCGACAAGCACCATCGGCGAAGAGGGGTCGCACAAACGGCTGGTCCTTAAGCTTATACAATAGCGAGTGTGTGTGTTTTTTTTGTTTTGGTTTGTGTTAGTTTGGCCTTACAATTAAGATAGCTCGTGTTGTCCATCTGTTTTGGACGTTTGGGCAATATAAAATAGCAGAAGAGGGCAGGAATACATTTAAACTGAACATTAATCTTACGTACAACATATAGAACCCCATCGGTGATTGTGATGAAGGCAAACATTTGGCATCGCACACACCGGGAGAATAGGGCCCGGAGGTGGCGATGGCACAAATACGATAGTCTTCCAAATTTGCTTAAATTAACACGATACAATACTGCACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAAGTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAATAACCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGATATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCTATATTTACNAT]
[+] EMBL BX621550 [ATCTTTCCTTATCTGCTCGAGCAGGTGGCAATACGCGGCATTTTCTACCTGTACGCCGCCACGTGCTTTGCTGGAGTGGCATACATCTATTGCTACGTACCGGAAACGTATGGCAAGAGCTTTGCCGATATTGAACGTTTCTTTACCGACAAGCACCATCGGCGAAGAGGGGTCGCACAAACGGCTGGTCCTTAAGCTTATACAATAGCGAGTGTGTGTGTTTTTTTTGTTTTGGTTTGTGTTAGTTTGGCCTTACAATTAAGATAGCTCGTGTTGTCCATCTGTTTTGGACGTTTGGGCAATATAAAATAGCAGAAGAGGGCAGGAATACATTTAAACTGAACATTAATCTTACGTACAACATATAGAACCCCATCGGTGATTGTGATGAAGGCAAACATTTGGCATCGCACACACCGGGAGAATAGGGCCCGGAGGTGGCGATGGCACAAATACGATAGTCTTCCAAATTTGCTTAAATTAACACGATACAATACTGCACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAAGTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAATAACCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGATATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCTATATTTACNAT]
consensusID : consensus_2404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[CCGCCCACGCGTCCGACAATAGTGAACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAAGTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAACAACCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGATATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCTATATTTACAATGAAGACATTAAAAAAGTAGAACAAATATTGTATACCAGCAACACTGTTTACCGCGTCGTTTGATGTAGGTTGAACCGGTGCTGGTTCTGTTTATTTAGCGAGCCGTGTTTGATTGAGCGTATCTTATCAGTCAGTCCCGTACGGCACTGCGTGGGAGTACCCCGAGAGCGAGACAATTCAACAATGTACAAAATGTTGCATATCA]
[+] EMBL BM596855 [CCGCCCACGCGTCCGACAATAGTGAACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAAGTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAACAACCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGATATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCTATATTTACAATGAAGACATTAAAAAAGTAGAACAAATATTGTATACCAGCAACACTGTTTACCGCGTCGTTTGATGTAGGTTGAACCGGTGCTGGTTCTGTTTATTTAGCGAGCCGTGTTTGATTGAGCGTATCTTATCAGTCAGTCCCGTACGGCACTGCGTGGGAGTACCCCGAGAGCGAGACAATTCAACAATGTACAAAATGTTGCATATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2404#0 ATCTTTCCTTATCTGCTCGAGCAGGTGGCAATACGCGGCATTTTCTACCTGTACGCCGCC 60
consensus_2404#1 ------------------------------------------------------------
consensus_2404#0 ACGTGCTTTGCTGGAGTGGCATACATCTATTGCTACGTACCGGAAACGTATGGCAAGAGC 120
consensus_2404#1 ------------------------------------------------------------
consensus_2404#0 TTTGCCGATATTGAACGTTTCTTTACCGACAAGCACCATCGGCGAAGAGGGGTCGCACAA 180
consensus_2404#1 ------------------------------------------------------------
consensus_2404#0 ACGGCTGGTCCTTAAGCTTATACAATAGCGAGTGTGTGTGTTTTTTTTGTTTTGGTTTGT 240
consensus_2404#1 ------------------------------------------------------------
consensus_2404#0 GTTAGTTTGGCCTTACAATTAAGATAGCTCGTGTTGTCCATCTGTTTTGGACGTTTGGGC 300
consensus_2404#1 ------------------------------------------------------------
consensus_2404#0 AATATAAAATAGCAGAAGAGGGCAGGAATACATTTAAACTGAACATTAATCTTACGTACA 360
consensus_2404#1 ------------------------------------------------------------
consensus_2404#0 ACATATAGAACCCCATCGGTGATTGTGATGAAGGCAAACATTTGGCATCGCACACACCGG 420
consensus_2404#1 ------------------------------------------------------------
consensus_2404#0 GAGAATAGGGCCCGGAGGTGGCGATGGCACAAATACGATAGTCTTCCAAATTTGCTTAAA 480
consensus_2404#1 ---------------------------------------------------CCGCCCACG 9
** *
consensus_2404#0 TTAACACGATACAATACTGCACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAA 540
consensus_2404#1 ----CGTCCGACAATAGTGAACTTAAGTACCTTGAGTCGAAGCCAAAAGTGAGTGCTGAA 65
* ****** ** ****************************************
consensus_2404#0 GTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAATAA 600
consensus_2404#1 GTAATACAGCAAGATTGTAAGGTTAATGATATGGAATAAGTGGTCTAGATTAGCAAACAA 125
********************************************************* **
consensus_2404#0 CCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGAT 660
consensus_2404#1 CCGGACGAGCAATATTGCTAAAGAACAAACTAAACCAAAAAAGATGGGTTTGATTTTGAT 185
************************************************************
consensus_2404#0 ATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCT 720
consensus_2404#1 ATACATACTTTGATATATGCAAGCATACCACCAATTTAACGTTTTATCTAAAATATATCT 245
************************************************************
consensus_2404#0 ATATTTACNAT------------------------------------------------- 731
consensus_2404#1 ATATTTACAATGAAGACATTAAAAAAGTAGAACAAATATTGTATACCAGCAACACTGTTT 305
******** **
consensus_2404#0 ------------------------------------------------------------
consensus_2404#1 ACCGCGTCGTTTGATGTAGGTTGAACCGGTGCTGGTTCTGTTTATTTAGCGAGCCGTGTT 365
consensus_2404#0 ------------------------------------------------------------
consensus_2404#1 TGATTGAGCGTATCTTATCAGTCAGTCCCGTACGGCACTGCGTGGGAGTACCCCGAGAGC 425
consensus_2404#0 ------------------------------------
consensus_2404#1 GAGACAATTCAACAATGTACAAAATGTTGCATATCA 461
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||