cluster # 2408

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2408 cluster # 2408 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2408#0 length = 773 sequences # 1

consensus_2408#1 length = 432 sequences # 1

consensusID : consensus_2408#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 773
fasta sequence

                              [GATCGCCCGAGTTACTCATCGGACGCTCGAGATGAACCGCAACAACTATCTGAATCCGCTCGGTTCCGGCGGTAATGGGGGCCCGGTAGTGCCCGGCACGCTCACACTCGGCCGCATCAAATCCGAGCGCAATAACTACATCAACGGGTACGGGGATACGCTGAATCGAAACAATTTAACGATGGCCCAGAACAACACCTTCAACACGCTCGGTCGCAACCAGCGGAACATCAATCATGCACCTGNACCACAACAACGCCAACCACGGGTCGATACAAGCGTGAACCTGAACCAGGGCCACCATCATCACCCGATGCACAACGGGGGCCCAGGTGTGGGTGGTTACGCGGGGACGGAGATAGTGACCAACACGCTGGGGCGCAACAATCGCTACAACGATGTGCCAATCACGAATCCTCTGCTTATCACATTCGCCAAAACGGAGAACCTACAGGTCGCAACCGCGAGCTGANACCATATCAGTCCCACCGAACGAGAACGTTNGCTTTGGCAAGCGCGACTACAACCAGCTGTCCTTCTCCTACCTAAACGATCTGGATCGATCCGATGCGGGAANACTACAACCCGAGCTGTACATAACGGAACAACTCCCCTCCCCCTGCGGTGTTGTGCCAGCGGTAGGCACTGCCCGACCGGCTAGAAAAAGCTCCCATTCAATACTGGTCGTCGTCTCTCGTGTGGANANTGGGGCAGCATCACGCGAATATGAAGTCTCTTCACACNGCGGCCNTAGCCCCGNGNCAAAATGAAAT]

[+] EMBL AL933796             [GATCGCCCGAGTTACTCATCGGACGCTCGAGATGAACCGCAACAACTATCTGAATCCGCTCGGTTCCGGCGGTAATGGGGGCCCGGTAGTGCCCGGCACGCTCACACTCGGCCGCATCAAATCCGAGCGCAATAACTACATCAACGGGTACGGGGATACGCTGAATCGAAACAATTTAACGATGGCCCAGAACAACACCTTCAACACGCTCGGTCGCAACCAGCGGAACATCAATCATGCACCTGNACCACAACAACGCCAACCACGGGTCGATACAAGCGTGAACCTGAACCAGGGCCACCATCATCACCCGATGCACAACGGGGGCCCAGGTGTGGGTGGTTACGCGGGGACGGAGATAGTGACCAACACGCTGGGGCGCAACAATCGCTACAACGATGTGCCAATCACGAATCCTCTGCTTATCACATTCGCCAAAACGGAGAACCTACAGGTCGCAACCGCGAGCTGANACCATATCAGTCCCACCGAACGAGAACGTTNGCTTTGGCAAGCGCGACTACAACCAGCTGTCCTTCTCCTACCTAAACGATCTGGATCGATCCGATGCGGGAANACTACAACCCGAGCTGTACATAACGGAACAACTCCCCTCCCCCTGCGGTGTTGTGCCAGCGGTAGGCACTGCCCGACCGGCTAGAAAAAGCTCCCATTCAATACTGGTCGTCGTCTCTCGTGTGGANANTGGGGCAGCATCACGCGAATATGAAGTCTCTTCACACNGCGGCCNTAGCCCCGNGNCAAAATGAAAT]




>consensus_2408#0
GATCGCCCGAGTTACTCATCGGACGCTCGAGATGAACCGCAACAACTATCTGAATCCGCT
CGGTTCCGGCGGTAATGGGGGCCCGGTAGTGCCCGGCACGCTCACACTCGGCCGCATCAA
ATCCGAGCGCAATAACTACATCAACGGGTACGGGGATACGCTGAATCGAAACAATTTAAC
GATGGCCCAGAACAACACCTTCAACACGCTCGGTCGCAACCAGCGGAACATCAATCATGC
ACCTGNACCACAACAACGCCAACCACGGGTCGATACAAGCGTGAACCTGAACCAGGGCCA
CCATCATCACCCGATGCACAACGGGGGCCCAGGTGTGGGTGGTTACGCGGGGACGGAGAT
AGTGACCAACACGCTGGGGCGCAACAATCGCTACAACGATGTGCCAATCACGAATCCTCT
GCTTATCACATTCGCCAAAACGGAGAACCTACAGGTCGCAACCGCGAGCTGANACCATAT
CAGTCCCACCGAACGAGAACGTTNGCTTTGGCAAGCGCGACTACAACCAGCTGTCCTTCT
CCTACCTAAACGATCTGGATCGATCCGATGCGGGAANACTACAACCCGAGCTGTACATAA
CGGAACAACTCCCCTCCCCCTGCGGTGTTGTGCCAGCGGTAGGCACTGCCCGACCGGCTA
GAAAAAGCTCCCATTCAATACTGGTCGTCGTCTCTCGTGTGGANANTGGGGCAGCATCAC
GCGAATATGAAGTCTCTTCACACNGCGGCCNTAGCCCCGNGNCAAAATGAAAT

consensusID : consensus_2408#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [CCCGAGGTTAATACGGGGATACGCTGAATCGAAACAATTTAACGATTGCCCAGAACAACACCTTCAACACGCTCGGTCGCAACCAGCGGAACATCAATCATGCACCGCACCACAACAACGCCAACCACGTGGTCTGAACAACTGTGAACCTGAACCATGTGCCACCATCATCACCCGATGCACAACGGGNGGCCCAGAGTGTGGGTGGTTACGCGTGGTGACTGGACGATAGTGACCAACACGCTGGGTGCGCAACAATCGCTACAACGATGTGCCAATCACGAATCCTCTGTTTCACATTACGCCAAAACGGAGACCTACAGTCGCAACCGCAGCTGAACCATATCAGTCCCACGAACGAAAACGTTAGCTTTGGGCCAAGCGCGACTACAACCAGCTGTACTTCTACCTACCTAANCCGATACTGGATCG]

[+] EMBL AL929928             [CCCGAGGTTAATACGGGGATACGCTGAATCGAAACAATTTAACGATTGCCCAGAACAACACCTTCAACACGCTCGGTCGCAACCAGCGGAACATCAATCATGCACCGCACCACAACAACGCCAACCACGTGGTCTGAACAACTGTGAACCTGAACCATGTGCCACCATCATCACCCGATGCACAACGGGNGGCCCAGAGTGTGGGTGGTTACGCGTGGTGACTGGACGATAGTGACCAACACGCTGGGTGCGCAACAATCGCTACAACGATGTGCCAATCACGAATCCTCTGTTTCACATTACGCCAAAACGGAGACCTACAGTCGCAACCGCAGCTGAACCATATCAGTCCCACGAACGAAAACGTTAGCTTTGGGCCAAGCGCGACTACAACCAGCTGTACTTCTACCTACCTAANCCGATACTGGATCG]




>consensus_2408#1
CCCGAGGTTAATACGGGGATACGCTGAATCGAAACAATTTAACGATTGCCCAGAACAACA
CCTTCAACACGCTCGGTCGCAACCAGCGGAACATCAATCATGCACCGCACCACAACAACG
CCAACCACGTGGTCTGAACAACTGTGAACCTGAACCATGTGCCACCATCATCACCCGATG
CACAACGGGNGGCCCAGAGTGTGGGTGGTTACGCGTGGTGACTGGACGATAGTGACCAAC
ACGCTGGGTGCGCAACAATCGCTACAACGATGTGCCAATCACGAATCCTCTGTTTCACAT
TACGCCAAAACGGAGACCTACAGTCGCAACCGCAGCTGAACCATATCAGTCCCACGAACG
AAAACGTTAGCTTTGGGCCAAGCGCGACTACAACCAGCTGTACTTCTACCTACCTAANCC
GATACTGGATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2408#0      GATCGCCCGAGTTACTCATCGGACGCTCGAGATGAACCGCAACAACTATCTGAATCCGCT 60
consensus_2408#1      ------------------------------------------------------------
                                                                                  

consensus_2408#0      CGGTTCCGGCGGTAATGGGGGCCCGGTAGTGCCCGGCACGCTCACACTCGGCCGCATCAA 120
consensus_2408#1      ------------------------------------------------------------
                                                                                  

consensus_2408#0      ATCCGAGCGCAATAACTACATCAACGGGTACGGGGATACGCTGAATCGAAACAATTTAAC 180
consensus_2408#1      -----------------CCCGAGGTTAATACGGGGATACGCTGAATCGAAACAATTTAAC 43
                                        *         ********************************

consensus_2408#0      GATGGCCCAGAACAACACCTTCAACACGCTCGGTCGCAACCAGCGGAACATCAATCATGC 240
consensus_2408#1      GATTGCCCAGAACAACACCTTCAACACGCTCGGTCGCAACCAGCGGAACATCAATCATGC 103
                      *** ********************************************************

consensus_2408#0      ACCTGNACCACAACAACGCCAACCACG-GGTCGATACAAGCGTGAACCTGAACCAGG-GC 298
consensus_2408#1      ACC-GCACCACAACAACGCCAACCACGTGGTCTGAACAACTGTGAACCTGAACCATGTGC 162
                      *** * ********************* ****   ****  ************** * **

consensus_2408#0      CACCATCATCACCCGATGCACAACGGGGG-CCCAG-GTGTGGGTGGTTACGCGGGG--AC 354
consensus_2408#1      CACCATCATCACCCGATGCACAACGGGNGGCCCAGAGTGTGGGTGGTTACGCGTGGTGAC 222
                      *************************** * ***** ***************** **  **

consensus_2408#0      GGA--GATAGTGACCAACACGCTGGG-GCGCAACAATCGCTACAACGATGTGCCAATCAC 411
consensus_2408#1      TGGACGATAGTGACCAACACGCTGGGTGCGCAACAATCGCTACAACGATGTGCCAATCAC 282
                       *   ********************* *********************************

consensus_2408#0      GAATCCTCTGCTTATCACATT-CGCCAAAACGGAGAACCTACAGGTCGCAACCGCGAGCT 470
consensus_2408#1      GAATCCTCTGTT--TCACATTACGCCAAAACGGAGA-CCTACAG-TCGCAACCGC-AGCT 337
                      ********** *  ******* ************** ******* ********** ****

consensus_2408#0      GANACCATATCAGTCCCACCGAACGAGAACGTTNGCTTTGG--CAAGCGCGACTACAACC 528
consensus_2408#1      GAA-CCATATCAGTCCCAC-GAACGAAAACGTTAGCTTTGGGCCAAGCGCGACTACAACC 395
                      **  *************** ****** ****** *******  *****************

consensus_2408#0      AGCTGTCCTTCT-CCTACCTAAAC-GAT-CTGGATCGATCCGATGCGGGAANACTACAAC 585
consensus_2408#1      AGCTGTACTTCTACCTACCTAANCCGATACTGGATCG----------------------- 432
                      ****** ***** ********* * *** ********                       

consensus_2408#0      CCGAGCTGTACATAACGGAACAACTCCCCTCCCCCTGCGGTGTTGTGCCAGCGGTAGGCA 645
consensus_2408#1      ------------------------------------------------------------
                                                                                  

consensus_2408#0      CTGCCCGACCGGCTAGAAAAAGCTCCCATTCAATACTGGTCGTCGTCTCTCGTGTGGANA 705
consensus_2408#1      ------------------------------------------------------------
                                                                                  

consensus_2408#0      NTGGGGCAGCATCACGCGAATATGAAGTCTCTTCACACNGCGGCCNTAGCCCCGNGNCAA 765
consensus_2408#1      ------------------------------------------------------------
                                                                                  

consensus_2408#0      AATGAAAT 773
consensus_2408#1      --------