cluster # 242

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Anopheles gambiae
cluster # 242 cluster # 242 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_242#0 length = 744 sequences # 1

consensus_242#1 length = 544 sequences # 1

consensusID : consensus_242#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 744
fasta sequence

                              [CCGCGGGGCCTGCCGCTGTAGCTGCCATTCTGAAGCCGCTTCCGTCGCTGTAGAACGTTTGTTGAGTGTTTTGCTGTGCGTTTTTTGTTGTTGTTTTTGTTACTTCTCCACCGCTTTCTCGTTCCGGTTCATTTATGCTTGCCGTGCGTTAGTGAATGTGTTAATCAAAATCGGTGTTTTGGTGTGAACGACATTTTTCGGTCGAAGGCCAGACCGCGCACGTCGATACTGTTGTTGCGTCAGCACGCTTCGGTTTCGGGAACGACGCCGAAAATTATAAAAAAACGCAGTAGCAAAGTGTTCGTGCCCCGGTCGAGTCGATCGCCCCAAGCCTCAGACCAGAGTGCATCATGCGGTTACCTTCGTGCAGCATAAACCCGGTGCCGTTCGATCGAAACACACTCTCGCTGCCATAAGACTGAACGCTGAGGCCGACGGTGCGAGCTTACACAACGGTGCCTTTTTTTGAAGACGCAAAGATCCCCATGGTGAGCCTTTTTTGCCCCCGGGTTGGGGATGTAGTGCACCGTGTCCGGTGCCAGTGGTTGGTGTTACAGGTCGATCTTGAAACGTGCTATCAACATATCGACCGCCGGCATTCCTTATCAATTGTGCTGGGTGTGTGTATATGTGTGCTTTGTGAGTTTGTGTGTGCGTGATCGTGTGAATAGTGTAAGTGAACGTCAAACAAACAAAAAACCAGGAAGAAGAAACAGAAAAGTGCGTCAAACAAAATGGCAAAAG]

[+] EMBL BM594311             [CCGCGGGGCCTGCCGCTGTAGCTGCCATTCTGAAGCCGCTTCCGTCGCTGTAGAACGTTTGTTGAGTGTTTTGCTGTGCGTTTTTTGTTGTTGTTTTTGTTACTTCTCCACCGCTTTCTCGTTCCGGTTCATTTATGCTTGCCGTGCGTTAGTGAATGTGTTAATCAAAATCGGTGTTTTGGTGTGAACGACATTTTTCGGTCGAAGGCCAGACCGCGCACGTCGATACTGTTGTTGCGTCAGCACGCTTCGGTTTCGGGAACGACGCCGAAAATTATAAAAAAACGCAGTAGCAAAGTGTTCGTGCCCCGGTCGAGTCGATCGCCCCAAGCCTCAGACCAGAGTGCATCATGCGGTTACCTTCGTGCAGCATAAACCCGGTGCCGTTCGATCGAAACACACTCTCGCTGCCATAAGACTGAACGCTGAGGCCGACGGTGCGAGCTTACACAACGGTGCCTTTTTTTGAAGACGCAAAGATCCCCATGGTGAGCCTTTTTTGCCCCCGGGTTGGGGATGTAGTGCACCGTGTCCGGTGCCAGTGGTTGGTGTTACAGGTCGATCTTGAAACGTGCTATCAACATATCGACCGCCGGCATTCCTTATCAATTGTGCTGGGTGTGTGTATATGTGTGCTTTGTGAGTTTGTGTGTGCGTGATCGTGTGAATAGTGTAAGTGAACGTCAAACAAACAAAAAACCAGGAAGAAGAAACAGAAAAGTGCGTCAAACAAAATGGCAAAAG]




>consensus_242#0
CCGCGGGGCCTGCCGCTGTAGCTGCCATTCTGAAGCCGCTTCCGTCGCTGTAGAACGTTT
GTTGAGTGTTTTGCTGTGCGTTTTTTGTTGTTGTTTTTGTTACTTCTCCACCGCTTTCTC
GTTCCGGTTCATTTATGCTTGCCGTGCGTTAGTGAATGTGTTAATCAAAATCGGTGTTTT
GGTGTGAACGACATTTTTCGGTCGAAGGCCAGACCGCGCACGTCGATACTGTTGTTGCGT
CAGCACGCTTCGGTTTCGGGAACGACGCCGAAAATTATAAAAAAACGCAGTAGCAAAGTG
TTCGTGCCCCGGTCGAGTCGATCGCCCCAAGCCTCAGACCAGAGTGCATCATGCGGTTAC
CTTCGTGCAGCATAAACCCGGTGCCGTTCGATCGAAACACACTCTCGCTGCCATAAGACT
GAACGCTGAGGCCGACGGTGCGAGCTTACACAACGGTGCCTTTTTTTGAAGACGCAAAGA
TCCCCATGGTGAGCCTTTTTTGCCCCCGGGTTGGGGATGTAGTGCACCGTGTCCGGTGCC
AGTGGTTGGTGTTACAGGTCGATCTTGAAACGTGCTATCAACATATCGACCGCCGGCATT
CCTTATCAATTGTGCTGGGTGTGTGTATATGTGTGCTTTGTGAGTTTGTGTGTGCGTGAT
CGTGTGAATAGTGTAAGTGAACGTCAAACAAACAAAAAACCAGGAAGAAGAAACAGAAAA
GTGCGTCAAACAAAATGGCAAAAG

consensusID : consensus_242#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 544
fasta sequence

                              [CCGGTTGTAAGAAAAAGGTACAACATCTTCTCTCGGCGATGAGGCGATGAGCGATACGATCCGGCAAAATTGGTCCGCAGCTTCAAACATCTCCACAGCCATTCAGTTGTGCCAGTGGTTTTACGGTGTTCAGCGTGTCCAGTTCGTCGTCCGTCGCGGTCGTGGTGTGTTCTCGGTGAAAATGAAAGCTGTACGCTGGGTTCGTGTTTCGCTTGCCCTGTGCATCACATTGCTTACGATCCCTTGGACAGGGGGCTACATCGTCGATCCCGGCCCAGTCGTGAAGGCTACCAAAGGTGAAATATGGCCCAAACCGCGGAACCAAACTACGTCACAACAATACTACACCATCAAAACGGGATCATTTGCATTTCAGTCTATGAACTACAGCTGTGATTTGTTGGAAAAAGCTCTTGATCGGTATCAAAAATTGGTTTTATCCATCGGTAACACTACCCGACGCGCGATGCACAACAGAGGCTATGCTTTCCAATCGCGCAATGAACTGAGCTCCGCTAGTCACGCCAACCGTTCGTGGCGCTCG]

[+] EMBL BM588260             [CCGGTTGTAAGAAAAAGGTACAACATCTTCTCTCGGCGATGAGGCGATGAGCGATACGATCCGGCAAAATTGGTCCGCAGCTTCAAACATCTCCACAGCCATTCAGTTGTGCCAGTGGTTTTACGGTGTTCAGCGTGTCCAGTTCGTCGTCCGTCGCGGTCGTGGTGTGTTCTCGGTGAAAATGAAAGCTGTACGCTGGGTTCGTGTTTCGCTTGCCCTGTGCATCACATTGCTTACGATCCCTTGGACAGGGGGCTACATCGTCGATCCCGGCCCAGTCGTGAAGGCTACCAAAGGTGAAATATGGCCCAAACCGCGGAACCAAACTACGTCACAACAATACTACACCATCAAAACGGGATCATTTGCATTTCAGTCTATGAACTACAGCTGTGATTTGTTGGAAAAAGCTCTTGATCGGTATCAAAAATTGGTTTTATCCATCGGTAACACTACCCGACGCGCGATGCACAACAGAGGCTATGCTTTCCAATCGCGCAATGAACTGAGCTCCGCTAGTCACGCCAACCGTTCGTGGCGCTCG]




>consensus_242#1
CCGGTTGTAAGAAAAAGGTACAACATCTTCTCTCGGCGATGAGGCGATGAGCGATACGAT
CCGGCAAAATTGGTCCGCAGCTTCAAACATCTCCACAGCCATTCAGTTGTGCCAGTGGTT
TTACGGTGTTCAGCGTGTCCAGTTCGTCGTCCGTCGCGGTCGTGGTGTGTTCTCGGTGAA
AATGAAAGCTGTACGCTGGGTTCGTGTTTCGCTTGCCCTGTGCATCACATTGCTTACGAT
CCCTTGGACAGGGGGCTACATCGTCGATCCCGGCCCAGTCGTGAAGGCTACCAAAGGTGA
AATATGGCCCAAACCGCGGAACCAAACTACGTCACAACAATACTACACCATCAAAACGGG
ATCATTTGCATTTCAGTCTATGAACTACAGCTGTGATTTGTTGGAAAAAGCTCTTGATCG
GTATCAAAAATTGGTTTTATCCATCGGTAACACTACCCGACGCGCGATGCACAACAGAGG
CTATGCTTTCCAATCGCGCAATGAACTGAGCTCCGCTAGTCACGCCAACCGTTCGTGGCG
CTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_242#0      CCGCGGGGCCTGCCGCTGTAGCTGCCATTCTGAAGCCGCTTCCGTCGCTGTAGAACGTTT 60
consensus_242#1      ------------------------------------------------------------
                                                                                 

consensus_242#0      GTTGAGTGTTTTGCTGTGCGTTTTTTGTTGTTGTTTTTGTTACTTCTCCACCGCTTTCTC 120
consensus_242#1      --------------------------CCGGTTGTAA--GAAAAAGGTACAACATCTTCTC 32
                                                  *****    *  *    * ** *   *****

consensus_242#0      GTTCCGGTTCATTTATGCTTGCCGTGCGTTAGTGAATGTGTTAATCAAAATCGGTGTTTT 180
consensus_242#1      TCGGCGATGAGGCGATGAGCGATACGATCCGGCAAAATTGGTCCGCAGCTTCAAACATCT 92
                         ** *      ***   *    *     *  **  ** *   **   **     * *

consensus_242#0      GGTGTGAACGACATTTTTCGGTCGAAGGCCAGACCGCGCACGTCGATACTGTTGTTGCGT 240
consensus_242#1      --CCACAGCCATTCAGTTGTGCCAGTGGTTTTACGGTGTTCAGCGTGTCCAGTTCGTCGT 150
                           * * *     **  * *   **    ** * *  *  **   *   *    ***

consensus_242#0      CAGCACGCTTCGGTTTCGGGAACGACGCCGAAAATTATAAAAAAACGCAGTAGCAAAGTG 300
consensus_242#1      C----CGTCGCGGTCGTGGTG-TGTTCTCGGTGA----AAATGAAAGCTGTA-CGCTGGG 200
                     *    **   ****   **    *    **   *    ***  ** ** *** *   * *

consensus_242#0      TTCGTGCCCCGGTCGAGTCGATCGCCCCAAGCCTCAGACCAGAGTGCATCATGCGGTTAC 360
consensus_242#1      TTCGTGTT---------TCGCTTGCCCTGTGCATCACATTGCTTACGATCCCTTGGACAG 251
                     ******           *** * ****   ** *** *         ***    **  * 

consensus_242#0      CTTCGTGCAGCATAAACCCGGTGCCGTTCGATCGAAACACACTCTCGCTGCCATAAGACT 420
consensus_242#1      GGGGCTACATCGTCGATCCCGGCCCAGTCG--TGAAGGCTACCAAAGGTGAAATATGGCC 309
                          * ** * *  * ** *  **  ***   ***    **    * **  *** * * 

consensus_242#0      GAACGCTGAGGCCGACGGTGCGAGCTTACACAACGGTGCCTTTTTTTGAAGACGCAAAGA 480
consensus_242#1      CAAACCGCGGAACCAAACTACG-----TCACAACAATACTACACCATCAAAACGGGATCA 364
                      **  *   *  * *   * **      ******  * *       * ** ***  *  *

consensus_242#0      TCCCCATGGTGAGCCTTTT--TTGCCCCCGGGTTGGGGATGTAGTGCACCGTGTCCGGTG 538
consensus_242#1      TTTGCATT-TCAGTCTATGAACTACAGCTGTGATTTGTTGGAAAAAGCTCTTGATCGGTA 423
                     *   ***  * ** ** *    * *  * * * *  *   * *      * **  **** 

consensus_242#0      CCAGTGGTTGGTGTTACAGGTCGATCTTGAAACGTGCTATCAACATATCGACCGCCGGCA 598
consensus_242#1      TCAAAAATTGGTTTTATCCATCGGTAACACTACCCGACG-CGCGATGCACAACAGAGGCT 482
                      **    ***** ***    *** *      **  *    *   **    * *   *** 

consensus_242#0      TTCCTTATCAATTGTGCTGGGTGTGTGTATATGTGTGCTTTGTGAGTTTGTGTGTGCGTG 658
consensus_242#1      ATGCTTTCCAATCGCGCAATGAACTGAGCTCCGCTAGTCACGCCAACC-GTTCGTG-GCG 540
                      * ***  **** * **   *        *  *   *    *  *    **  *** * *

consensus_242#0      ATCGTGTGAATAGTGTAAGTGAACGTCAAACAAACAAAAAACCAGGAAGAAGAAACAGAA 718
consensus_242#1      CTCG-------------------------------------------------------- 544
                      ***                                                        

consensus_242#0      AAGTGCGTCAAACAAAATGGCAAAAG 744
consensus_242#1      --------------------------