cluster # 2420

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Anopheles gambiae
cluster # 2420 cluster # 2420 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2420#0 length = 390 sequences # 1

consensus_2420#1 length = 271 sequences # 1

consensusID : consensus_2420#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [CCGCTATAAATTGCTTGAACATTGGATTACTACAAAAACGTCTTTTAACATATTGGCGGCGGCGGCGGCGGCGGCGGCGAAAGGAGGAAGAAACCTTTCCCTATTAATCCTTCTCTTCCTCCTTTTTCTTCTTCTGCTACGACCCTTCTTTGCGGCGGCCTTTCGCTGTCTTTGTCCTCTCCTTCGCCATCGGGTGCATCAACTGGTATTGCGCGCTACAAAAATTGACCATTTGTCGGGCATTTGAAACGTGGTTTCTCCACTTCCTTCCACACAAAGGCAGTCTTCTCCTCTGTCCAGTTCTGCACTGCATTCATTTACAGGATATAAGGCAATTTCTGTGCATCACCCGTGGTGGTGGTTCGCGATGTGTAAGAGCACACACGAATG]

[+] EMBL BM609584             [CCGCTATAAATTGCTTGAACATTGGATTACTACAAAAACGTCTTTTAACATATTGGCGGCGGCGGCGGCGGCGGCGGCGAAAGGAGGAAGAAACCTTTCCCTATTAATCCTTCTCTTCCTCCTTTTTCTTCTTCTGCTACGACCCTTCTTTGCGGCGGCCTTTCGCTGTCTTTGTCCTCTCCTTCGCCATCGGGTGCATCAACTGGTATTGCGCGCTACAAAAATTGACCATTTGTCGGGCATTTGAAACGTGGTTTCTCCACTTCCTTCCACACAAAGGCAGTCTTCTCCTCTGTCCAGTTCTGCACTGCATTCATTTACAGGATATAAGGCAATTTCTGTGCATCACCCGTGGTGGTGGTTCGCGATGTGTAAGAGCACACACGAATG]




>consensus_2420#0
CCGCTATAAATTGCTTGAACATTGGATTACTACAAAAACGTCTTTTAACATATTGGCGGC
GGCGGCGGCGGCGGCGGCGAAAGGAGGAAGAAACCTTTCCCTATTAATCCTTCTCTTCCT
CCTTTTTCTTCTTCTGCTACGACCCTTCTTTGCGGCGGCCTTTCGCTGTCTTTGTCCTCT
CCTTCGCCATCGGGTGCATCAACTGGTATTGCGCGCTACAAAAATTGACCATTTGTCGGG
CATTTGAAACGTGGTTTCTCCACTTCCTTCCACACAAAGGCAGTCTTCTCCTCTGTCCAG
TTCTGCACTGCATTCATTTACAGGATATAAGGCAATTTCTGTGCATCACCCGTGGTGGTG
GTTCGCGATGTGTAAGAGCACACACGAATG

consensusID : consensus_2420#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [TACAAAAACGTCTTTTAACATATTGGCGGCGGCGGCGGCGGCGGCGGCGAAAGGAGGAAGAAACCTTTCCCTATTAATCCTTCTCCTCCTCCTCTCCTCTTCCTGTGACACTCTTGTGGTGCTTTTGGAGCAGGAGTAGAGGAAGTGTGGTAGTGGTGATGGTCAATTGAGTAACAAGGAAGAGAGAGAGAGAGAGAGTACGAGTAGACACCACCTCCAATCTGCAGACATTCGTGTGTGCTCTTACACATCGCGAACCACCACCACGGGT]

[+] EMBL BM596477             [TACAAAAACGTCTTTTAACATATTGGCGGCGGCGGCGGCGGCGGCGGCGAAAGGAGGAAGAAACCTTTCCCTATTAATCCTTCTCCTCCTCCTCTCCTCTTCCTGTGACACTCTTGTGGTGCTTTTGGAGCAGGAGTAGAGGAAGTGTGGTAGTGGTGATGGTCAATTGAGTAACAAGGAAGAGAGAGAGAGAGAGAGTACGAGTAGACACCACCTCCAATCTGCAGACATTCGTGTGTGCTCTTACACATCGCGAACCACCACCACGGGT]




>consensus_2420#1
TACAAAAACGTCTTTTAACATATTGGCGGCGGCGGCGGCGGCGGCGGCGAAAGGAGGAAG
AAACCTTTCCCTATTAATCCTTCTCCTCCTCCTCTCCTCTTCCTGTGACACTCTTGTGGT
GCTTTTGGAGCAGGAGTAGAGGAAGTGTGGTAGTGGTGATGGTCAATTGAGTAACAAGGA
AGAGAGAGAGAGAGAGAGTACGAGTAGACACCACCTCCAATCTGCAGACATTCGTGTGTG
CTCTTACACATCGCGAACCACCACCACGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2420#0      CCGCTATAAATTGCTTGAACATTGGATTACTACAAAAACGTCTTTTAACATATTGGCGGC 60
consensus_2420#1      ------------------------------TACAAAAACGTCTTTTAACATATTGGCGGC 30
                                                    ******************************

consensus_2420#0      GGCGGCGGCGGCGGCGGCGAAAGGAGGAAGAAACCTTTCCCTATTAATCCTTCTCTTCCT 120
consensus_2420#1      GGCGGCGGCGGCGGCGGCGAAAGGAGGAAGAAACCTTTCCCTATTAATCCTTCTCCTCCT 90
                      ******************************************************* ****

consensus_2420#0      CCTTTTTCTTCTTCTGCTACGACCCTTCTTTGCGGCGGCCTTTCGCTGTCTTTGTCCTCT 180
consensus_2420#1      CCT----CTCCTCTTCCTGTGACACTC--TTGTGGTGCTTTTGGAGCAGGAGTAGAGGAA 144
                      ***    ** **  * **  *** **   *** ** *   **          *       

consensus_2420#0      CCTTCGCCATCGGGTGCATCAACTGGTATTGCGCGCTACAAAAATTGACCATTTGT-CGG 239
consensus_2420#1      GTGTGGTAGTGGTGATGGTCAATTGA-GTAACAAGGAAGAGAGAGAGAGAGAGAGTACGA 203
                         * *   * * *    **** **   *  *  *  * * * *  **      ** ** 

consensus_2420#0      GCATTTGAAACGTGGTTTCTCCACTTCCTTCCACACAAAGGCAGTCTTCTCCTCTGTCCA 299
consensus_2420#1      GTA-----GACACCACCTC-CAATCTGCAGACATTCGTGTGTGCTCTTACACATCGCGAA 257
                      * *      **      ** * *  * *   **  *    *   ****   *   *   *

consensus_2420#0      GTTCTGCACTGCATTCATTTACAGGATATAAGGCAATTTCTGTGCATCACCCGTGGTGGT 359
consensus_2420#1      CCACCACCACGGGT---------------------------------------------- 271
                         *  *   *  *                                              

consensus_2420#0      GGTTCGCGATGTGTAAGAGCACACACGAATG 390
consensus_2420#1      -------------------------------