cluster # 2447

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2447 cluster # 2447 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2447#0 length = 742 sequences # 1

consensus_2447#1 length = 600 sequences # 1

consensusID : consensus_2447#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 742
fasta sequence

                              [CCGCGCTGTCCTGTTCCGTTCTGGTTTGAATGCAAACGGATTCGGTTGGTGGTGGATACTGATTTGTTGATTTGTGTTTTCGCTAAGCGCAGATACGATGTTTTGCTATTATAACATTCTATTCTTTAACCATTATTTATGCTTTGTTTTTATATTGTCTTCGTTTTGTTAATGCCTTTTTTGTGCTACGTTTTGTTGGTTGATGTAGCCAAATAGCGCGGAGGGGCGGGCGGTGAGAAAGTCCGACTGTTGCTTTTATAAAAGTCTGGCCCACCCCACCATACACCAACCTGCAGGAAAGCTATAATCTATCGCTCATCCATCATTTGCAGAAAACTAGAGTGTCACTGCTTTAAATCTGTCCGGTGACTGAGGAAATGATGGTGTAAGTTTGTAAGACACAAAAGCAAAACAAGTGAGAGTGAAACTCCTGCCTCCGAACACTTTTGTCGGAACACCTTATTATTGGCGGATAATGAACAAAAAAAAAAGAAGCTAAATAAAGAGCTAAAAAGGGATGAAACTGAAACAGGCCACTCCGGAGGACGTAAGCTGATAGGAAATGGAAGCAAATCTGTGGCGGGGAAATACATGTGTTTTGTTTTTTGCATCACGGTAATTCTTGTATATGTTGTCTACTATCACTAGAACCAGACAGAAAACAGCGGGAATATAGCGGGGCAACAAAGATGCAATAGATACACCCGTTTGTTTATCCATTAACTGTGTAATCCTTCGTGCT]

[+] EMBL BX613531             [CCGCGCTGTCCTGTTCCGTTCTGGTTTGAATGCAAACGGATTCGGTTGGTGGTGGATACTGATTTGTTGATTTGTGTTTTCGCTAAGCGCAGATACGATGTTTTGCTATTATAACATTCTATTCTTTAACCATTATTTATGCTTTGTTTTTATATTGTCTTCGTTTTGTTAATGCCTTTTTTGTGCTACGTTTTGTTGGTTGATGTAGCCAAATAGCGCGGAGGGGCGGGCGGTGAGAAAGTCCGACTGTTGCTTTTATAAAAGTCTGGCCCACCCCACCATACACCAACCTGCAGGAAAGCTATAATCTATCGCTCATCCATCATTTGCAGAAAACTAGAGTGTCACTGCTTTAAATCTGTCCGGTGACTGAGGAAATGATGGTGTAAGTTTGTAAGACACAAAAGCAAAACAAGTGAGAGTGAAACTCCTGCCTCCGAACACTTTTGTCGGAACACCTTATTATTGGCGGATAATGAACAAAAAAAAAAGAAGCTAAATAAAGAGCTAAAAAGGGATGAAACTGAAACAGGCCACTCCGGAGGACGTAAGCTGATAGGAAATGGAAGCAAATCTGTGGCGGGGAAATACATGTGTTTTGTTTTTTGCATCACGGTAATTCTTGTATATGTTGTCTACTATCACTAGAACCAGACAGAAAACAGCGGGAATATAGCGGGGCAACAAAGATGCAATAGATACACCCGTTTGTTTATCCATTAACTGTGTAATCCTTCGTGCT]




>consensus_2447#0
CCGCGCTGTCCTGTTCCGTTCTGGTTTGAATGCAAACGGATTCGGTTGGTGGTGGATACT
GATTTGTTGATTTGTGTTTTCGCTAAGCGCAGATACGATGTTTTGCTATTATAACATTCT
ATTCTTTAACCATTATTTATGCTTTGTTTTTATATTGTCTTCGTTTTGTTAATGCCTTTT
TTGTGCTACGTTTTGTTGGTTGATGTAGCCAAATAGCGCGGAGGGGCGGGCGGTGAGAAA
GTCCGACTGTTGCTTTTATAAAAGTCTGGCCCACCCCACCATACACCAACCTGCAGGAAA
GCTATAATCTATCGCTCATCCATCATTTGCAGAAAACTAGAGTGTCACTGCTTTAAATCT
GTCCGGTGACTGAGGAAATGATGGTGTAAGTTTGTAAGACACAAAAGCAAAACAAGTGAG
AGTGAAACTCCTGCCTCCGAACACTTTTGTCGGAACACCTTATTATTGGCGGATAATGAA
CAAAAAAAAAAGAAGCTAAATAAAGAGCTAAAAAGGGATGAAACTGAAACAGGCCACTCC
GGAGGACGTAAGCTGATAGGAAATGGAAGCAAATCTGTGGCGGGGAAATACATGTGTTTT
GTTTTTTGCATCACGGTAATTCTTGTATATGTTGTCTACTATCACTAGAACCAGACAGAA
AACAGCGGGAATATAGCGGGGCAACAAAGATGCAATAGATACACCCGTTTGTTTATCCAT
TAACTGTGTAATCCTTCGTGCT

consensusID : consensus_2447#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence

                              [CCGGATTTGTTGATTTGTGTTTTCGCTAAGCGCAGATACGATGTTTTGCTATTATAATTAACACTCTATTCTTTAACCATTATTTATGCTTTGTTTTTTTTATTGTCTTCGTTTTGTTAATGCCTTTTTTTGTGCTACGTTTTGTTGGTTGATGTAGCCAAATAATGCGGAGGGGCGGGGGTGAGAAAGTCTGGCTATTGCTTTTTTAGAGGTCCTGGCTCAACCCCCCCCCCCCCCCCATAAACCGACCGGCAGGAAAGCTATAATCTATCGCTCATCCATCATTTGCAGAAAACTAGAGTGTCACTGCTTTAAATCTGTCCGGTGACTGAGGAAATGATGGTGTAAATTTGTAAGACACAAAAGCAAAACAAATGAGAGTGAAACTCCTGCCTCCGAACACTTTTGTCGGAACACCTTATTATTGGTGGATAATGAACAAAAAAAAAAAGAAGCTAAATAAAGAGCTAAAAAGGGATGAAACTGAAACAGGCCACTCCGGAGGACGTAACCTGAAATAATAAATAAATGTGTTTTGTTTTTTGCATCACGGTAATCCTTGTATATGTTGTCTACTATCACTAGAACCAGACAGAAAAC]

[+] EMBL BM596104             [CCGGATTTGTTGATTTGTGTTTTCGCTAAGCGCAGATACGATGTTTTGCTATTATAATTAACACTCTATTCTTTAACCATTATTTATGCTTTGTTTTTTTTATTGTCTTCGTTTTGTTAATGCCTTTTTTTGTGCTACGTTTTGTTGGTTGATGTAGCCAAATAATGCGGAGGGGCGGGGGTGAGAAAGTCTGGCTATTGCTTTTTTAGAGGTCCTGGCTCAACCCCCCCCCCCCCCCCATAAACCGACCGGCAGGAAAGCTATAATCTATCGCTCATCCATCATTTGCAGAAAACTAGAGTGTCACTGCTTTAAATCTGTCCGGTGACTGAGGAAATGATGGTGTAAATTTGTAAGACACAAAAGCAAAACAAATGAGAGTGAAACTCCTGCCTCCGAACACTTTTGTCGGAACACCTTATTATTGGTGGATAATGAACAAAAAAAAAAAGAAGCTAAATAAAGAGCTAAAAAGGGATGAAACTGAAACAGGCCACTCCGGAGGACGTAACCTGAAATAATAAATAAATGTGTTTTGTTTTTTGCATCACGGTAATCCTTGTATATGTTGTCTACTATCACTAGAACCAGACAGAAAAC]




>consensus_2447#1
CCGGATTTGTTGATTTGTGTTTTCGCTAAGCGCAGATACGATGTTTTGCTATTATAATTA
ACACTCTATTCTTTAACCATTATTTATGCTTTGTTTTTTTTATTGTCTTCGTTTTGTTAA
TGCCTTTTTTTGTGCTACGTTTTGTTGGTTGATGTAGCCAAATAATGCGGAGGGGCGGGG
GTGAGAAAGTCTGGCTATTGCTTTTTTAGAGGTCCTGGCTCAACCCCCCCCCCCCCCCCA
TAAACCGACCGGCAGGAAAGCTATAATCTATCGCTCATCCATCATTTGCAGAAAACTAGA
GTGTCACTGCTTTAAATCTGTCCGGTGACTGAGGAAATGATGGTGTAAATTTGTAAGACA
CAAAAGCAAAACAAATGAGAGTGAAACTCCTGCCTCCGAACACTTTTGTCGGAACACCTT
ATTATTGGTGGATAATGAACAAAAAAAAAAAGAAGCTAAATAAAGAGCTAAAAAGGGATG
AAACTGAAACAGGCCACTCCGGAGGACGTAACCTGAAATAATAAATAAATGTGTTTTGTT
TTTTGCATCACGGTAATCCTTGTATATGTTGTCTACTATCACTAGAACCAGACAGAAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2447#0      CCGCGCTGTCCTGTTCCGTTCTGGTTTGAATGCAAACGGATTCGGTTGGTGGTGGATACT 60
consensus_2447#1      ---------------------------------------------------------CCG 3
                                                                                * 

consensus_2447#0      GATTTGTTGATTTGTGTTTTCGCTAAGCGCAGATACGATGTTTTGCTATTATAA----CA 116
consensus_2447#1      GATTTGTTGATTTGTGTTTTCGCTAAGCGCAGATACGATGTTTTGCTATTATAATTAACA 63
                      ******************************************************    **

consensus_2447#0      TTCTATTCTTTAACCATTATTTATGCTTTGTTTTTAT-ATTGTCTTCGTTTTGTTAATGC 175
consensus_2447#1      CTCTATTCTTTAACCATTATTTATGCTTTGTTTTTTTTATTGTCTTCGTTTTGTTAATGC 123
                       ********************************** * **********************

consensus_2447#0      CTTTTTT-GTGCTACGTTTTGTTGGTTGATGTAGCCAAATAGCGCGGAGGGGCGGGCGGT 234
consensus_2447#1      CTTTTTTTGTGCTACGTTTTGTTGGTTGATGTAGCCAAATAATGCGGAGGGGCGGG-GGT 182
                      ******* *********************************  ************* ***

consensus_2447#0      GAGAAAGTCCGACTGTTGCTTTTATAAAAGTC-TGGCCCA----------CCCCACCATA 283
consensus_2447#1      GAGAAAGTCTGGCTATTGCTTTTTTAGAGGTCCTGGCTCAACCCCCCCCCCCCCCCCATA 242
                      ********* * ** ******** ** * *** **** **          **** *****

consensus_2447#0      CACCAACCTGCAGGAAAGCTATAATCTATCGCTCATCCATCATTTGCAGAAAACTAGAGT 343
consensus_2447#1      AACCGACCGGCAGGAAAGCTATAATCTATCGCTCATCCATCATTTGCAGAAAACTAGAGT 302
                       *** *** ***************************************************

consensus_2447#0      GTCACTGCTTTAAATCTGTCCGGTGACTGAGGAAATGATGGTGTAAGTTTGTAAGACACA 403
consensus_2447#1      GTCACTGCTTTAAATCTGTCCGGTGACTGAGGAAATGATGGTGTAAATTTGTAAGACACA 362
                      ********************************************** *************

consensus_2447#0      AAAGCAAAACAAGTGAGAGTGAAACTCCTGCCTCCGAACACTTTTGTCGGAACACCTTAT 463
consensus_2447#1      AAAGCAAAACAAATGAGAGTGAAACTCCTGCCTCCGAACACTTTTGTCGGAACACCTTAT 422
                      ************ ***********************************************

consensus_2447#0      TATTGGCGGATAATGAACAAAAAAAAAA-GAAGCTAAATAAAGAGCTAAAAAGGGATGAA 522
consensus_2447#1      TATTGGTGGATAATGAACAAAAAAAAAAAGAAGCTAAATAAAGAGCTAAAAAGGGATGAA 482
                      ****** ********************* *******************************

consensus_2447#0      ACTGAAACAGGCCACTCCGGAGGACGTAAGCTGATAGGAAATGGAAGCAAATCTGTGGCG 582
consensus_2447#1      ACTGAAACAGGCCACTCCGGAGGACGTAACCTGA-----AAT-------AAT-------- 522
                      ***************************** ****     ***       ***        

consensus_2447#0      GGGAAATACATGTGTTTTGTTTTTTGCATCACGGTAATTCTTGTATATGTTGTCTACTAT 642
consensus_2447#1      ---AAATAAATGTGTTTTGTTTTTTGCATCACGGTAATCCTTGTATATGTTGTCTACTAT 579
                         ***** ***************************** *********************

consensus_2447#0      CACTAGAACCAGACAGAAAACAGCGGGAATATAGCGGGGCAACAAAGATGCAATAGATAC 702
consensus_2447#1      CACTAGAACCAGACAGAAAAC--------------------------------------- 600
                      *********************                                       

consensus_2447#0      ACCCGTTTGTTTATCCATTAACTGTGTAATCCTTCGTGCT 742
consensus_2447#1      ----------------------------------------