cluster # 2451

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Anopheles gambiae
cluster # 2451 cluster # 2451 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2451#0 length = 660 sequences # 1

consensus_2451#1 length = 576 sequences # 1

consensusID : consensus_2451#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence

                              [CCGCGCCTCCAGCTACGATGGAGAAGGAACAGCCCCAAGACCAAACCATGACGATACAGCTAACGTTCTGTCGCATCTGTGCCGTCCTCAGCACGGAGGAGCATTGCATCTACGAAGTGGCGTACAGTTCCGGCACACTCAGCATGCACGCGATGATGGAAAAGCTAGTTCCCTCGGTGTTCAACGCGGAGCAGGTAAAGGTGGACGAGTTTATGTCCTTTCCCACGAAAGTGTGCGGCAGTTGCAAAGCCAAAGTGCTCGAGGCGTACGGGCTGTACGAGCAGTGCGTGAGGAGTGGCGATCTGCTGCGCGACTGTTTAGCGCGTAAGAAAAACGCAACGTTCATCGTGAACATAACCGGTGCTGGTGGTGGCGGTGGTGGTGGTCGCGGGGTGGATAGTTCCGAGGGCAAACTGATTGTTCCGCTGGCGTATGAAATGGAGGAAGTGTCGGTAGGTAGCAAACCTCACACTACAACGGTGGTTGAGATAACGACGGAAGAAATCGGCCCACACCGTAAGGTGGAAAGTGAAGGCGAAAGTGAGATGGGTGGAGTTGGTTCCTAGCCTTTTCGATGAAGATGCCGCTGAGCATGTTGCCTCGGGAACAGGGAGATCATCCGACGTGTTCCGAGGGAGAAACTGTAACGATACCTGCTTC]

[+] EMBL BM596040             [CCGCGCCTCCAGCTACGATGGAGAAGGAACAGCCCCAAGACCAAACCATGACGATACAGCTAACGTTCTGTCGCATCTGTGCCGTCCTCAGCACGGAGGAGCATTGCATCTACGAAGTGGCGTACAGTTCCGGCACACTCAGCATGCACGCGATGATGGAAAAGCTAGTTCCCTCGGTGTTCAACGCGGAGCAGGTAAAGGTGGACGAGTTTATGTCCTTTCCCACGAAAGTGTGCGGCAGTTGCAAAGCCAAAGTGCTCGAGGCGTACGGGCTGTACGAGCAGTGCGTGAGGAGTGGCGATCTGCTGCGCGACTGTTTAGCGCGTAAGAAAAACGCAACGTTCATCGTGAACATAACCGGTGCTGGTGGTGGCGGTGGTGGTGGTCGCGGGGTGGATAGTTCCGAGGGCAAACTGATTGTTCCGCTGGCGTATGAAATGGAGGAAGTGTCGGTAGGTAGCAAACCTCACACTACAACGGTGGTTGAGATAACGACGGAAGAAATCGGCCCACACCGTAAGGTGGAAAGTGAAGGCGAAAGTGAGATGGGTGGAGTTGGTTCCTAGCCTTTTCGATGAAGATGCCGCTGAGCATGTTGCCTCGGGAACAGGGAGATCATCCGACGTGTTCCGAGGGAGAAACTGTAACGATACCTGCTTC]




>consensus_2451#0
CCGCGCCTCCAGCTACGATGGAGAAGGAACAGCCCCAAGACCAAACCATGACGATACAGC
TAACGTTCTGTCGCATCTGTGCCGTCCTCAGCACGGAGGAGCATTGCATCTACGAAGTGG
CGTACAGTTCCGGCACACTCAGCATGCACGCGATGATGGAAAAGCTAGTTCCCTCGGTGT
TCAACGCGGAGCAGGTAAAGGTGGACGAGTTTATGTCCTTTCCCACGAAAGTGTGCGGCA
GTTGCAAAGCCAAAGTGCTCGAGGCGTACGGGCTGTACGAGCAGTGCGTGAGGAGTGGCG
ATCTGCTGCGCGACTGTTTAGCGCGTAAGAAAAACGCAACGTTCATCGTGAACATAACCG
GTGCTGGTGGTGGCGGTGGTGGTGGTCGCGGGGTGGATAGTTCCGAGGGCAAACTGATTG
TTCCGCTGGCGTATGAAATGGAGGAAGTGTCGGTAGGTAGCAAACCTCACACTACAACGG
TGGTTGAGATAACGACGGAAGAAATCGGCCCACACCGTAAGGTGGAAAGTGAAGGCGAAA
GTGAGATGGGTGGAGTTGGTTCCTAGCCTTTTCGATGAAGATGCCGCTGAGCATGTTGCC
TCGGGAACAGGGAGATCATCCGACGTGTTCCGAGGGAGAAACTGTAACGATACCTGCTTC

consensusID : consensus_2451#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [CCGAAACTTTCTCTGCCGCCGCCTCCAGCTACGATGGAGAAGGAACAGCCCCAAGACCAAACCATGACGATACAGCTAACGTTCTGTCGCATCTGTGCCGTCCTCAGCACGGAGGAGCATTGCATCTACGAAGTGGCGTACAGTGCCGGCACACTCAGCATGCACGCGATGATGGAAAAGCTTGTTCCCTCGGTATTCAACGCGGAGCAGGTAAAGGTGGACGAGTTTATGTCCTTTCCCACGAAAGTGTGCGGCACAATCAAACGATGTAGAGAGGTTTTGGCGAGAAGATCGGTAGCATTAGGAGGCATTATGATATATGGTACCCAGGGAAACGGTGAATTATAAAGTGAAGATCTCTCTATACTTTATTTCACTTTTTTTAAAGCCAGAATTGATTTGCCACTTTGCGTAGAGAAGCTTCAAAGGAAAGGAAATGTGCAAGTAAATTACTTTTACGTATGAGAGTTGATGGTGTATGTTAAGATACAAAGTGTTGTTGTATTAGGATCACACTTTTTTTTTTATTATTAAAAGACGAGACATAAGAGTAAAGAAATAATTTCTATTTTTTCC]

[+] EMBL BM644172             [CCGAAACTTTCTCTGCCGCCGCCTCCAGCTACGATGGAGAAGGAACAGCCCCAAGACCAAACCATGACGATACAGCTAACGTTCTGTCGCATCTGTGCCGTCCTCAGCACGGAGGAGCATTGCATCTACGAAGTGGCGTACAGTGCCGGCACACTCAGCATGCACGCGATGATGGAAAAGCTTGTTCCCTCGGTATTCAACGCGGAGCAGGTAAAGGTGGACGAGTTTATGTCCTTTCCCACGAAAGTGTGCGGCACAATCAAACGATGTAGAGAGGTTTTGGCGAGAAGATCGGTAGCATTAGGAGGCATTATGATATATGGTACCCAGGGAAACGGTGAATTATAAAGTGAAGATCTCTCTATACTTTATTTCACTTTTTTTAAAGCCAGAATTGATTTGCCACTTTGCGTAGAGAAGCTTCAAAGGAAAGGAAATGTGCAAGTAAATTACTTTTACGTATGAGAGTTGATGGTGTATGTTAAGATACAAAGTGTTGTTGTATTAGGATCACACTTTTTTTTTTATTATTAAAAGACGAGACATAAGAGTAAAGAAATAATTTCTATTTTTTCC]




>consensus_2451#1
CCGAAACTTTCTCTGCCGCCGCCTCCAGCTACGATGGAGAAGGAACAGCCCCAAGACCAA
ACCATGACGATACAGCTAACGTTCTGTCGCATCTGTGCCGTCCTCAGCACGGAGGAGCAT
TGCATCTACGAAGTGGCGTACAGTGCCGGCACACTCAGCATGCACGCGATGATGGAAAAG
CTTGTTCCCTCGGTATTCAACGCGGAGCAGGTAAAGGTGGACGAGTTTATGTCCTTTCCC
ACGAAAGTGTGCGGCACAATCAAACGATGTAGAGAGGTTTTGGCGAGAAGATCGGTAGCA
TTAGGAGGCATTATGATATATGGTACCCAGGGAAACGGTGAATTATAAAGTGAAGATCTC
TCTATACTTTATTTCACTTTTTTTAAAGCCAGAATTGATTTGCCACTTTGCGTAGAGAAG
CTTCAAAGGAAAGGAAATGTGCAAGTAAATTACTTTTACGTATGAGAGTTGATGGTGTAT
GTTAAGATACAAAGTGTTGTTGTATTAGGATCACACTTTTTTTTTTATTATTAAAAGACG
AGACATAAGAGTAAAGAAATAATTTCTATTTTTTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2451#0      ---------------CCGC-GCCTCCAGCTACGATGGAGAAGGAACAGCCCCAAGACCAA 44
consensus_2451#1      CCGAAACTTTCTCTGCCGCCGCCTCCAGCTACGATGGAGAAGGAACAGCCCCAAGACCAA 60
                                     **** ****************************************

consensus_2451#0      ACCATGACGATACAGCTAACGTTCTGTCGCATCTGTGCCGTCCTCAGCACGGAGGAGCAT 104
consensus_2451#1      ACCATGACGATACAGCTAACGTTCTGTCGCATCTGTGCCGTCCTCAGCACGGAGGAGCAT 120
                      ************************************************************

consensus_2451#0      TGCATCTACGAAGTGGCGTACAGTTCCGGCACACTCAGCATGCACGCGATGATGGAAAAG 164
consensus_2451#1      TGCATCTACGAAGTGGCGTACAGTGCCGGCACACTCAGCATGCACGCGATGATGGAAAAG 180
                      ************************ ***********************************

consensus_2451#0      CTAGTTCCCTCGGTGTTCAACGCGGAGCAGGTAAAGGTGGACGAGTTTATGTCCTTTCCC 224
consensus_2451#1      CTTGTTCCCTCGGTATTCAACGCGGAGCAGGTAAAGGTGGACGAGTTTATGTCCTTTCCC 240
                      ** *********** *********************************************

consensus_2451#0      ACGAAAGTGTGCGGCAGTTGCAAAGCCAAAGTGCTCGAGGCGTACGGGCTGTACGAGCAG 284
consensus_2451#1      ACGAAAGTGTGCGGCACAATCAAA--CGATGTA---GAGAGGTTTTGGCGAGAAGATCGG 295
                      ****************    ****  * * **    ***  **   ***   * ** * *

consensus_2451#0      T-GCGTGAGGAG---TGGCGATCTGCTGCGCGACTGTTTAGCGCGTAAGAAAAACGCAAC 340
consensus_2451#1      TAGCATTAGGAGGCATTATGATATATGGTACC-CAGGGAAACGGTGAATTATAAAGTGAA 354
                      * ** * *****   *   *** *   *  *  * *   * **   **  * ** *  * 

consensus_2451#0      GTTCATCGTGAACATAAC--CGGTGCTGGTGGTGGCGGTGGTGGTG-GTCGCG--GGGTG 395
consensus_2451#1      GATCTCTCTATACTTTATTTCACTTTTTTTAAAGCCAGAATTGATTTGCCACTTTGCGTA 414
                      * **    *  ** * *   *  *  *  *   * * *   ** *  * * *   * ** 

consensus_2451#0      GATAGTTCCGAGGGCAAACTGATTGTTCCGCTGGCGTATGAAATGGAGGAAGTGTCGGTA 455
consensus_2451#1      GAGAAGCTTCAAAGGAAAGGAAATGT---GCAAGTAAATTACTTTTACGTA-TGAGAGTT 470
                      ** *      *  * ***   * ***   **  *   ** *  *  * * * **   ** 

consensus_2451#0      GGTAGCAAACCTCACACTACAACG-GTGGTTGAGATAACGACGGAAGAAATCGGCCCACA 514
consensus_2451#1      GATGGTGTATGTTAAGATACAAAGTGTTGTTGTATTAGGATCACACTTTTTTTTTTATTA 530
                      * * *   *  * *   ***** * ** ****   **    *  *     *        *

consensus_2451#0      CCGTAAGGTGGAAAGTGAAGGCGAAAGTGAGATGGGTGGAGTTGGTTCCTAGCCTTTTCG 574
consensus_2451#1      TTAAAAGACGAGACATAAGAGTAAA---GAAATAATTTCTATTTTTTCC----------- 576
                          ***  *  *  * *  *  **   ** **   *    **  ****           

consensus_2451#0      ATGAAGATGCCGCTGAGCATGTTGCCTCGGGAACAGGGAGATCATCCGACGTGTTCCGAG 634
consensus_2451#1      ------------------------------------------------------------
                                                                                  

consensus_2451#0      GGAGAAACTGTAACGATACCTGCTTC 660
consensus_2451#1      --------------------------