cluster # 2454

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Anopheles gambiae
cluster # 2454 cluster # 2454 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2454#0 length = 772 sequences # 1

consensus_2454#1 length = 729 sequences # 1

consensusID : consensus_2454#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 772
fasta sequence

                              [CTTTTGATTATTGCAGTATACGGCGAGGAGCAAAATGCACTTCGTCAACTGATTTCGAAGCGCGGTCCTGTAGCTTTAAGTCGTGCAATATCATCTTGCAAACAGGGACGTCGACAGGATTGTGAGGACTGTTCTACAGTAAAAATTTGTAGCTACGATCAGACCGCTCTTACATCCTATCGCTGTCAAGATGTAGATCCAGCTAAGCCTTATTGTACAGGTGAAGGAATATGCTCAGAAACGCAAGAAGATGGTGTTGTGTGCAACGAAGCGAATGAATTGTGTCCGATGAATTCTCCTGGGTTCTATCCTGACCCTTCAAATTGCACTAGATATTTGTATTGTGATTCTGAAATGTTAGGATATGAGCAAAACTGCTTAGCGGTCAATAATGTGTACAACCAGACTACGGCTGCTTGCTTCCTTAAGCGCCGTTCATCTGATTGCTTCCAGGTGGATTGTAAAAATTCTCGAAACATAAATAAGTGGTTTGTATACACACCTTTCCCACAGCTGTATTTTCTGTGCTCGTCAAATGGGGCAATCATGTTCAAATGCCCGCGTGAAACTGATGTTTTTGATTTGGACCTAAAACGATGCGAGTTTGAATGTCGCGAAGCGGGAAGATTCGCTCATCCTAATGTCAGAATGTACTACGAATGTGCATTTGTTAGCACCAGCAAGCTCCAGAAGTTTGAACAAACTTGTCCACCTTTACTGGAGTTTAATGCAAGGATCAAAAATGTCTTGAAAAAAAATGACTTGATGAGTT]

[+] EMBL BX625900             [CTTTTGATTATTGCAGTATACGGCGAGGAGCAAAATGCACTTCGTCAACTGATTTCGAAGCGCGGTCCTGTAGCTTTAAGTCGTGCAATATCATCTTGCAAACAGGGACGTCGACAGGATTGTGAGGACTGTTCTACAGTAAAAATTTGTAGCTACGATCAGACCGCTCTTACATCCTATCGCTGTCAAGATGTAGATCCAGCTAAGCCTTATTGTACAGGTGAAGGAATATGCTCAGAAACGCAAGAAGATGGTGTTGTGTGCAACGAAGCGAATGAATTGTGTCCGATGAATTCTCCTGGGTTCTATCCTGACCCTTCAAATTGCACTAGATATTTGTATTGTGATTCTGAAATGTTAGGATATGAGCAAAACTGCTTAGCGGTCAATAATGTGTACAACCAGACTACGGCTGCTTGCTTCCTTAAGCGCCGTTCATCTGATTGCTTCCAGGTGGATTGTAAAAATTCTCGAAACATAAATAAGTGGTTTGTATACACACCTTTCCCACAGCTGTATTTTCTGTGCTCGTCAAATGGGGCAATCATGTTCAAATGCCCGCGTGAAACTGATGTTTTTGATTTGGACCTAAAACGATGCGAGTTTGAATGTCGCGAAGCGGGAAGATTCGCTCATCCTAATGTCAGAATGTACTACGAATGTGCATTTGTTAGCACCAGCAAGCTCCAGAAGTTTGAACAAACTTGTCCACCTTTACTGGAGTTTAATGCAAGGATCAAAAATGTCTTGAAAAAAAATGACTTGATGAGTT]




>consensus_2454#0
CTTTTGATTATTGCAGTATACGGCGAGGAGCAAAATGCACTTCGTCAACTGATTTCGAAG
CGCGGTCCTGTAGCTTTAAGTCGTGCAATATCATCTTGCAAACAGGGACGTCGACAGGAT
TGTGAGGACTGTTCTACAGTAAAAATTTGTAGCTACGATCAGACCGCTCTTACATCCTAT
CGCTGTCAAGATGTAGATCCAGCTAAGCCTTATTGTACAGGTGAAGGAATATGCTCAGAA
ACGCAAGAAGATGGTGTTGTGTGCAACGAAGCGAATGAATTGTGTCCGATGAATTCTCCT
GGGTTCTATCCTGACCCTTCAAATTGCACTAGATATTTGTATTGTGATTCTGAAATGTTA
GGATATGAGCAAAACTGCTTAGCGGTCAATAATGTGTACAACCAGACTACGGCTGCTTGC
TTCCTTAAGCGCCGTTCATCTGATTGCTTCCAGGTGGATTGTAAAAATTCTCGAAACATA
AATAAGTGGTTTGTATACACACCTTTCCCACAGCTGTATTTTCTGTGCTCGTCAAATGGG
GCAATCATGTTCAAATGCCCGCGTGAAACTGATGTTTTTGATTTGGACCTAAAACGATGC
GAGTTTGAATGTCGCGAAGCGGGAAGATTCGCTCATCCTAATGTCAGAATGTACTACGAA
TGTGCATTTGTTAGCACCAGCAAGCTCCAGAAGTTTGAACAAACTTGTCCACCTTTACTG
GAGTTTAATGCAAGGATCAAAAATGTCTTGAAAAAAAATGACTTGATGAGTT

consensusID : consensus_2454#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 729
fasta sequence

                              [GCAAGAATCGCCCCGAGGCGTCACTGATTTCGAAGCGCGGTCCTGTAGCTTTAAGTCGTGCAATATCATCTTGCAAACAGGGACGTCGACAGGATTGTGAGGACTGTTCTACAGTAAAAATTTGTAGCTACGATCAGACCGCTCTTACATCCTATCGCTGTCAAGATGTAGATCCAGCTAAGCCTTATTGTACAGGTGAAGGAATATGCTCAGAAACGCAAGAAGATGGTGTTGTGTGCAACGAAGCGAATGAATTGTGTCCGATGAATTCTCCTGGGTTCTATCCTGACCCTTCAAATTTGCACTAGATATTTGTATTGTGATTCTGAAATGTTAGGATATGAGCAAAACTGCTTAGCGGTCAATAATGTGTACAACCAGACTACGGCTGCTTGCTTCCTTAAGCGCCGTTCATCTGATTGCTTCCAGGTGGCATTGTAAAAATTCTCGAAACATAAATAAGTGGTTTGTATACACACCTTTCCCACAGCTGTATTTTCTGTGCTCGTCAAATGGGGCAATCATGTTCAAATGCCCGCGTGAAACTGATGTTTGATTTGGACCTAAAACGATGCGAGTTTGAATGTCGCGAAGCGGGAAGATTCGCTCATCCTAATGTCAGAATGTACTACGAATGTGCATTTGTTAGCACCAGCAAGCTCCAGAAGTTTGAACAAACTTGTCCACCTTTACTGGAGTTTAATGCAAAGGATCAAAAATGTCTTGAAA]

[+] EMBL AL930321             [GCAAGAATCGCCCCGAGGCGTCACTGATTTCGAAGCGCGGTCCTGTAGCTTTAAGTCGTGCAATATCATCTTGCAAACAGGGACGTCGACAGGATTGTGAGGACTGTTCTACAGTAAAAATTTGTAGCTACGATCAGACCGCTCTTACATCCTATCGCTGTCAAGATGTAGATCCAGCTAAGCCTTATTGTACAGGTGAAGGAATATGCTCAGAAACGCAAGAAGATGGTGTTGTGTGCAACGAAGCGAATGAATTGTGTCCGATGAATTCTCCTGGGTTCTATCCTGACCCTTCAAATTTGCACTAGATATTTGTATTGTGATTCTGAAATGTTAGGATATGAGCAAAACTGCTTAGCGGTCAATAATGTGTACAACCAGACTACGGCTGCTTGCTTCCTTAAGCGCCGTTCATCTGATTGCTTCCAGGTGGCATTGTAAAAATTCTCGAAACATAAATAAGTGGTTTGTATACACACCTTTCCCACAGCTGTATTTTCTGTGCTCGTCAAATGGGGCAATCATGTTCAAATGCCCGCGTGAAACTGATGTTTGATTTGGACCTAAAACGATGCGAGTTTGAATGTCGCGAAGCGGGAAGATTCGCTCATCCTAATGTCAGAATGTACTACGAATGTGCATTTGTTAGCACCAGCAAGCTCCAGAAGTTTGAACAAACTTGTCCACCTTTACTGGAGTTTAATGCAAAGGATCAAAAATGTCTTGAAA]




>consensus_2454#1
GCAAGAATCGCCCCGAGGCGTCACTGATTTCGAAGCGCGGTCCTGTAGCTTTAAGTCGTG
CAATATCATCTTGCAAACAGGGACGTCGACAGGATTGTGAGGACTGTTCTACAGTAAAAA
TTTGTAGCTACGATCAGACCGCTCTTACATCCTATCGCTGTCAAGATGTAGATCCAGCTA
AGCCTTATTGTACAGGTGAAGGAATATGCTCAGAAACGCAAGAAGATGGTGTTGTGTGCA
ACGAAGCGAATGAATTGTGTCCGATGAATTCTCCTGGGTTCTATCCTGACCCTTCAAATT
TGCACTAGATATTTGTATTGTGATTCTGAAATGTTAGGATATGAGCAAAACTGCTTAGCG
GTCAATAATGTGTACAACCAGACTACGGCTGCTTGCTTCCTTAAGCGCCGTTCATCTGAT
TGCTTCCAGGTGGCATTGTAAAAATTCTCGAAACATAAATAAGTGGTTTGTATACACACC
TTTCCCACAGCTGTATTTTCTGTGCTCGTCAAATGGGGCAATCATGTTCAAATGCCCGCG
TGAAACTGATGTTTGATTTGGACCTAAAACGATGCGAGTTTGAATGTCGCGAAGCGGGAA
GATTCGCTCATCCTAATGTCAGAATGTACTACGAATGTGCATTTGTTAGCACCAGCAAGC
TCCAGAAGTTTGAACAAACTTGTCCACCTTTACTGGAGTTTAATGCAAAGGATCAAAAAT
GTCTTGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2454#0      CTTTTGATTATTGCAGTATACGGCGAGGAGCAAAATGCACTTCGTCAACTGATTTCGAAG 60
consensus_2454#1      ----------------------GCAAGAATCGC--CCCGAGGCGTCA-CTGATTTCGAAG 35
                                            ** ** * *      *    ***** ************

consensus_2454#0      CGCGGTCCTGTAGCTTTAAGTCGTGCAATATCATCTTGCAAACAGGGACGTCGACAGGAT 120
consensus_2454#1      CGCGGTCCTGTAGCTTTAAGTCGTGCAATATCATCTTGCAAACAGGGACGTCGACAGGAT 95
                      ************************************************************

consensus_2454#0      TGTGAGGACTGTTCTACAGTAAAAATTTGTAGCTACGATCAGACCGCTCTTACATCCTAT 180
consensus_2454#1      TGTGAGGACTGTTCTACAGTAAAAATTTGTAGCTACGATCAGACCGCTCTTACATCCTAT 155
                      ************************************************************

consensus_2454#0      CGCTGTCAAGATGTAGATCCAGCTAAGCCTTATTGTACAGGTGAAGGAATATGCTCAGAA 240
consensus_2454#1      CGCTGTCAAGATGTAGATCCAGCTAAGCCTTATTGTACAGGTGAAGGAATATGCTCAGAA 215
                      ************************************************************

consensus_2454#0      ACGCAAGAAGATGGTGTTGTGTGCAACGAAGCGAATGAATTGTGTCCGATGAATTCTCCT 300
consensus_2454#1      ACGCAAGAAGATGGTGTTGTGTGCAACGAAGCGAATGAATTGTGTCCGATGAATTCTCCT 275
                      ************************************************************

consensus_2454#0      GGGTTCTATCCTGACCCTTCAAATT-GCACTAGATATTTGTATTGTGATTCTGAAATGTT 359
consensus_2454#1      GGGTTCTATCCTGACCCTTCAAATTTGCACTAGATATTTGTATTGTGATTCTGAAATGTT 335
                      ************************* **********************************

consensus_2454#0      AGGATATGAGCAAAACTGCTTAGCGGTCAATAATGTGTACAACCAGACTACGGCTGCTTG 419
consensus_2454#1      AGGATATGAGCAAAACTGCTTAGCGGTCAATAATGTGTACAACCAGACTACGGCTGCTTG 395
                      ************************************************************

consensus_2454#0      CTTCCTTAAGCGCCGTTCATCTGATTGCTTCCAGGTGG-ATTGTAAAAATTCTCGAAACA 478
consensus_2454#1      CTTCCTTAAGCGCCGTTCATCTGATTGCTTCCAGGTGGCATTGTAAAAATTCTCGAAACA 455
                      ************************************** *********************

consensus_2454#0      TAAATAAGTGGTTTGTATACACACCTTTCCCACAGCTGTATTTTCTGTGCTCGTCAAATG 538
consensus_2454#1      TAAATAAGTGGTTTGTATACACACCTTTCCCACAGCTGTATTTTCTGTGCTCGTCAAATG 515
                      ************************************************************

consensus_2454#0      GGGCAATCATGTTCAAATGCCCGCGTGAAACTGATGTTTTTGATTTGGACCTAAAACGAT 598
consensus_2454#1      GGGCAATCATGTTCAAATGCCCGCGTGAAACTGATGTTT--GATTTGGACCTAAAACGAT 573
                      ***************************************  *******************

consensus_2454#0      GCGAGTTTGAATGTCGCGAAGCGGGAAGATTCGCTCATCCTAATGTCAGAATGTACTACG 658
consensus_2454#1      GCGAGTTTGAATGTCGCGAAGCGGGAAGATTCGCTCATCCTAATGTCAGAATGTACTACG 633
                      ************************************************************

consensus_2454#0      AATGTGCATTTGTTAGCACCAGCAAGCTCCAGAAGTTTGAACAAACTTGTCCACCTTTAC 718
consensus_2454#1      AATGTGCATTTGTTAGCACCAGCAAGCTCCAGAAGTTTGAACAAACTTGTCCACCTTTAC 693
                      ************************************************************

consensus_2454#0      TGGAGTTTAATGCAA-GGATCAAAAATGTCTTGAAAAAAAATGACTTGATGAGTT 772
consensus_2454#1      TGGAGTTTAATGCAAAGGATCAAAAATGTCTTGAAA------------------- 729
                      *************** ********************