cluster # 2471

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Anopheles gambiae
cluster # 2471 cluster # 2471 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2471#0 length = 524 sequences # 1

consensus_2471#1 length = 516 sequences # 1

consensusID : consensus_2471#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence

                              [GATCGCCCCGAGGTTNTGTTTTTTAGAGTTTATAGCGCAAAATGTATCGTTGGTACTAAAACCGGTGGCTATCGTGCTGGTTTCCTTCGCTCCTGCCCAGTGACCCATCCAGTGACGGCCAGCCGATGGAGCTGATTGTGATTTTAGGCGTTGTGGTGCTGCTGTACGTGGTGCTGTTGTTTTTCGACGGATTTTTTAAGAGCTGCATGCACTACCCGTACGATGCATTCCTGCGAGGGACCGGACTGACGGTCAAGTTCCTACGCCTTCAGTGGCACACCACGGCCCTGAACCGCTCCATCGTGAAATGGAGCACAAAGTATCCGAAAATACTCGACTGCAGCTTCAATGCGGGCGTCTACCTCAGTCTGGTGCTGATGCCGTTTGCCATCGTGATGATTGTCGTGTCTTCCCTGCAAAAAACCTTCACGGCAGTCGGCGAAGGTAGTCACAACGGCGGGGCGGGTGGCGGCGATCCGCGCACATCCGCGGCCGCCGTGTGGTGGAGATCGATCTGGTGGTGC]

[+] EMBL AL930442             [GATCGCCCCGAGGTTNTGTTTTTTAGAGTTTATAGCGCAAAATGTATCGTTGGTACTAAAACCGGTGGCTATCGTGCTGGTTTCCTTCGCTCCTGCCCAGTGACCCATCCAGTGACGGCCAGCCGATGGAGCTGATTGTGATTTTAGGCGTTGTGGTGCTGCTGTACGTGGTGCTGTTGTTTTTCGACGGATTTTTTAAGAGCTGCATGCACTACCCGTACGATGCATTCCTGCGAGGGACCGGACTGACGGTCAAGTTCCTACGCCTTCAGTGGCACACCACGGCCCTGAACCGCTCCATCGTGAAATGGAGCACAAAGTATCCGAAAATACTCGACTGCAGCTTCAATGCGGGCGTCTACCTCAGTCTGGTGCTGATGCCGTTTGCCATCGTGATGATTGTCGTGTCTTCCCTGCAAAAAACCTTCACGGCAGTCGGCGAAGGTAGTCACAACGGCGGGGCGGGTGGCGGCGATCCGCGCACATCCGCGGCCGCCGTGTGGTGGAGATCGATCTGGTGGTGC]




>consensus_2471#0
GATCGCCCCGAGGTTNTGTTTTTTAGAGTTTATAGCGCAAAATGTATCGTTGGTACTAAA
ACCGGTGGCTATCGTGCTGGTTTCCTTCGCTCCTGCCCAGTGACCCATCCAGTGACGGCC
AGCCGATGGAGCTGATTGTGATTTTAGGCGTTGTGGTGCTGCTGTACGTGGTGCTGTTGT
TTTTCGACGGATTTTTTAAGAGCTGCATGCACTACCCGTACGATGCATTCCTGCGAGGGA
CCGGACTGACGGTCAAGTTCCTACGCCTTCAGTGGCACACCACGGCCCTGAACCGCTCCA
TCGTGAAATGGAGCACAAAGTATCCGAAAATACTCGACTGCAGCTTCAATGCGGGCGTCT
ACCTCAGTCTGGTGCTGATGCCGTTTGCCATCGTGATGATTGTCGTGTCTTCCCTGCAAA
AAACCTTCACGGCAGTCGGCGAAGGTAGTCACAACGGCGGGGCGGGTGGCGGCGATCCGC
GCACATCCGCGGCCGCCGTGTGGTGGAGATCGATCTGGTGGTGC

consensusID : consensus_2471#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [CGAGGTTTAGCCAATTTGCCGGTGGTTGTGGGAAAATTGCGTGTTTTTTAGAGTTTTATAGCGCAAAAATGTATCGTTGGTACTAAAACCGGTGGCTATCGTGCTGGTTTCCTTCGCTCCTGCCCAGTGACCCATCCAGTGACGGCCAGCCGATGGAGCTGATTGTGATATTTAGGCGTTGTGGTGCTGCTGTACGTGGTGCTGTNGTATTATTCGACGGATTTTTTAAGAGCTGCATGCACTACCCGTACGATGCATTCCTGCGAGGGACCGGACTGACGGTCAAGTTCCTACGCCTTCAGTGGCACACCACGGGCCTGAACCGCTCCATCGTGAAATGGAGCACAAAGTATCCGAAAATACTCGACTGCAGCTTCAATGCGGGCGTCTACCTCAGTCTGGTGCTGATGCCGTTTGCCATCGTGATGATTGTCGCTGTCTTCCCTGCAAACAAACCTTCACGGCCAGTCGGCGAACGCGTAGTCACAACCGGCGGGGCGGGTGGCGCGCGANACC]

[+] EMBL AL931783             [CGAGGTTTAGCCAATTTGCCGGTGGTTGTGGGAAAATTGCGTGTTTTTTAGAGTTTTATAGCGCAAAAATGTATCGTTGGTACTAAAACCGGTGGCTATCGTGCTGGTTTCCTTCGCTCCTGCCCAGTGACCCATCCAGTGACGGCCAGCCGATGGAGCTGATTGTGATATTTAGGCGTTGTGGTGCTGCTGTACGTGGTGCTGTNGTATTATTCGACGGATTTTTTAAGAGCTGCATGCACTACCCGTACGATGCATTCCTGCGAGGGACCGGACTGACGGTCAAGTTCCTACGCCTTCAGTGGCACACCACGGGCCTGAACCGCTCCATCGTGAAATGGAGCACAAAGTATCCGAAAATACTCGACTGCAGCTTCAATGCGGGCGTCTACCTCAGTCTGGTGCTGATGCCGTTTGCCATCGTGATGATTGTCGCTGTCTTCCCTGCAAACAAACCTTCACGGCCAGTCGGCGAACGCGTAGTCACAACCGGCGGGGCGGGTGGCGCGCGANACC]




>consensus_2471#1
CGAGGTTTAGCCAATTTGCCGGTGGTTGTGGGAAAATTGCGTGTTTTTTAGAGTTTTATA
GCGCAAAAATGTATCGTTGGTACTAAAACCGGTGGCTATCGTGCTGGTTTCCTTCGCTCC
TGCCCAGTGACCCATCCAGTGACGGCCAGCCGATGGAGCTGATTGTGATATTTAGGCGTT
GTGGTGCTGCTGTACGTGGTGCTGTNGTATTATTCGACGGATTTTTTAAGAGCTGCATGC
ACTACCCGTACGATGCATTCCTGCGAGGGACCGGACTGACGGTCAAGTTCCTACGCCTTC
AGTGGCACACCACGGGCCTGAACCGCTCCATCGTGAAATGGAGCACAAAGTATCCGAAAA
TACTCGACTGCAGCTTCAATGCGGGCGTCTACCTCAGTCTGGTGCTGATGCCGTTTGCCA
TCGTGATGATTGTCGCTGTCTTCCCTGCAAACAAACCTTCACGGCCAGTCGGCGAACGCG
TAGTCACAACCGGCGGGGCGGGTGGCGCGCGANACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2471#0      -----------------------GATCGCCCCGAGGTTN--TGTTTTTTAGAGTTT-ATA 34
consensus_2471#1      CGAGGTTTAGCCAATTTGCCGGTGGTTGTGGGAAAATTGCGTGTTTTTTAGAGTTTTATA 60
                                             * * *     *  **   *************** ***

consensus_2471#0      GCGCAAAA-TGTATCGTTGGTACTAAAACCGGTGGCTATCGTGCTGGTTTCCTTCGCTCC 93
consensus_2471#1      GCGCAAAAATGTATCGTTGGTACTAAAACCGGTGGCTATCGTGCTGGTTTCCTTCGCTCC 120
                      ******** ***************************************************

consensus_2471#0      TGCCCAGTGACCCATCCAGTGACGGCCAGCCGATGGAGCTGATTGTGAT-TTTAGGCGTT 152
consensus_2471#1      TGCCCAGTGACCCATCCAGTGACGGCCAGCCGATGGAGCTGATTGTGATATTTAGGCGTT 180
                      ************************************************* **********

consensus_2471#0      GTGGTGCTGCTGTACGTGGTGCTGTTGTTTT--TCGACGGATTTTTTAAGAGCTGCATGC 210
consensus_2471#1      GTGGTGCTGCTGTACGTGGTGCTGTNGTATTATTCGACGGATTTTTTAAGAGCTGCATGC 240
                      ************************* ** **  ***************************

consensus_2471#0      ACTACCCGTACGATGCATTCCTGCGAGGGACCGGACTGACGGTCAAGTTCCTACGCCTTC 270
consensus_2471#1      ACTACCCGTACGATGCATTCCTGCGAGGGACCGGACTGACGGTCAAGTTCCTACGCCTTC 300
                      ************************************************************

consensus_2471#0      AGTGGCACACCACGGCCCTGAACCGCTCCATCGTGAAATGGAGCACAAAGTATCCGAAAA 330
consensus_2471#1      AGTGGCACACCACGGGCCTGAACCGCTCCATCGTGAAATGGAGCACAAAGTATCCGAAAA 360
                      *************** ********************************************

consensus_2471#0      TACTCGACTGCAGCTTCAATGCGGGCGTCTACCTCAGTCTGGTGCTGATGCCGTTTGCCA 390
consensus_2471#1      TACTCGACTGCAGCTTCAATGCGGGCGTCTACCTCAGTCTGGTGCTGATGCCGTTTGCCA 420
                      ************************************************************

consensus_2471#0      TCGTGATGATTGTCG-TGTCTTCCCTGCAAA-AAACCTTCACGGC-AGTCGGCGAAGG-- 445
consensus_2471#1      TCGTGATGATTGTCGCTGTCTTCCCTGCAAACAAACCTTCACGGCCAGTCGGCGAACGCG 480
                      *************** *************** ************* ********** *  

consensus_2471#0      TAGTCACAAC-GGCGGGGCGGGTGGCG-GCGATCCGCGCACATCCGCGGCCGCCGTGTGG 503
consensus_2471#1      TAGTCACAACCGGCGGGGCGGGTGGCGCGCGANACC------------------------ 516
                      ********** **************** ****  *                         

consensus_2471#0      TGGAGATCGATCTGGTGGTGC 524
consensus_2471#1      ---------------------