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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[CCGCGGACGCGTGGGGTCCGATCGGTGACAATGTGGCTACTCCTTCCCGTTGGAGGTTTTTCCAAAGATTTTTCACCAGAAGTACGGCGCAAAGCGATACCGAAGGCAACAACATACAGGAACCGCCGGCACCGGCGCAAGCACCGTCACCCCAACCGTTCAGTCCCACCGTGCCGCTCGGCACGGGTAACAACATCCTCAATGCGCACCTGTCCGGTTCGTTCCACGGCTCGGAAGACACGACCGACGACGAGCTGCTCGATGCAATGCAGCGCGACCGGACCAAGCAGCGCCAGTTCCGATCAGCACCAGACATGCCCTCGACCAGTGTCGGAGCGCGTCTCGGGGTAGCCGCACTGCCGAACGTTAACTTCAACCCGGCGGGCGGTGGCGCAAACGCGCCGGCAGCACCGGCAGAGTCATCGTCCGGTGGTGGTGCCCCGAGACGGTACCCCCGCCAACCGATGCCTCGGCATGAGCGTAGACGTAATGGCAACAACAATAGCCATATTGTGTAAATACGTGCCTAACCGAACGTGGCGGGACGTCCCTGGAGTGGCTGCGACGTTCGGAGGATGGTGGTACACACAAACACACGCGTGATTCGGTGTGCTATAGCGTTTTTCTTTTCTTCTTTCTCTCCCGGGTGCGGAC]
[+] EMBL BM635182 [CCGCGGACGCGTGGGGTCCGATCGGTGACAATGTGGCTACTCCTTCCCGTTGGAGGTTTTTCCAAAGATTTTTCACCAGAAGTACGGCGCAAAGCGATACCGAAGGCAACAACATACAGGAACCGCCGGCACCGGCGCAAGCACCGTCACCCCAACCGTTCAGTCCCACCGTGCCGCTCGGCACGGGTAACAACATCCTCAATGCGCACCTGTCCGGTTCGTTCCACGGCTCGGAAGACACGACCGACGACGAGCTGCTCGATGCAATGCAGCGCGACCGGACCAAGCAGCGCCAGTTCCGATCAGCACCAGACATGCCCTCGACCAGTGTCGGAGCGCGTCTCGGGGTAGCCGCACTGCCGAACGTTAACTTCAACCCGGCGGGCGGTGGCGCAAACGCGCCGGCAGCACCGGCAGAGTCATCGTCCGGTGGTGGTGCCCCGAGACGGTACCCCCGCCAACCGATGCCTCGGCATGAGCGTAGACGTAATGGCAACAACAATAGCCATATTGTGTAAATACGTGCCTAACCGAACGTGGCGGGACGTCCCTGGAGTGGCTGCGACGTTCGGAGGATGGTGGTACACACAAACACACGCGTGATTCGGTGTGCTATAGCGTTTTTCTTTTCTTCTTTCTCTCCCGGGTGCGGAC]
consensusID : consensus_2474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence
[CCCGAGGTATNGGTGACAATGTGGTTACTCCTTCCCGTTGGAGGTTTTTCCAAAGATTTTTCACCAGAAGTACTGGCGCAAAGCGATACCTGAAGGCAACAACATACAGGAACCGCCGGCACCGGCGCAAGCACCGTCACCCCAACCGTTCAGTCCCACCGTGCCGCTCGGCACTGGGTAACAACATCCTCAATGCGCACCTGTCCTGGTTCGTTCCACTGGCTCTGGAAGACACGACCTGACGACGAGCTGCTCGATGCAATGCAGCGCTGACCTGGACCAAGCAGCGCCAGTTCCTGCTCGGCACCAGACATGCCCTCGACCAGTGTCTGGCTGCTGCTGTCTCTGGGGTAGCCGCACTGCCGAACGTTAACTTCAACCCGGCGGGCTGGTGGCGCAAACGCGCCGGTAGCACCAGCCGAGTCATCGTCCGGTGGTGGTGCCCCGAGACGGTACCCCCGCCAACCGNATGCCTCGGCATGAGCGTACGACGTAATGGCAACAACCAATAGCCCANTATCTGNTGCTACAACTACGCTGCCCTAACCGACACCGCTGGCCGGCGCACGCTCCCCTGCGCAGCTGGCCTGCGCACGCTNTCGCGCACCGCACTGNCTGCGCTACCTCCACACACCACCACACCCA]
[+] EMBL AL930455 [CCCGAGGTATNGGTGACAATGTGGTTACTCCTTCCCGTTGGAGGTTTTTCCAAAGATTTTTCACCAGAAGTACTGGCGCAAAGCGATACCTGAAGGCAACAACATACAGGAACCGCCGGCACCGGCGCAAGCACCGTCACCCCAACCGTTCAGTCCCACCGTGCCGCTCGGCACTGGGTAACAACATCCTCAATGCGCACCTGTCCTGGTTCGTTCCACTGGCTCTGGAAGACACGACCTGACGACGAGCTGCTCGATGCAATGCAGCGCTGACCTGGACCAAGCAGCGCCAGTTCCTGCTCGGCACCAGACATGCCCTCGACCAGTGTCTGGCTGCTGCTGTCTCTGGGGTAGCCGCACTGCCGAACGTTAACTTCAACCCGGCGGGCTGGTGGCGCAAACGCGCCGGTAGCACCAGCCGAGTCATCGTCCGGTGGTGGTGCCCCGAGACGGTACCCCCGCCAACCGNATGCCTCGGCATGAGCGTACGACGTAATGGCAACAACCAATAGCCCANTATCTGNTGCTACAACTACGCTGCCCTAACCGACACCGCTGGCCGGCGCACGCTCCCCTGCGCAGCTGGCCTGCGCACGCTNTCGCGCACCGCACTGNCTGCGCTACCTCCACACACCACCACACCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2474#0 CCGCGGACGCGTGGGGTCCGATCGGTGACAATGTGGCTACTCCTTCCCGTTGGAGGTTTT 60
consensus_2474#1 ---------CCCGAGGT---ATNGGTGACAATGTGGTTACTCCTTCCCGTTGGAGGTTTT 48
* * *** ** ************* ***********************
consensus_2474#0 TCCAAAGATTTTTCACCAGAAGTAC-GGCGCAAAGCGATACC-GAAGGCAACAACATACA 118
consensus_2474#1 TCCAAAGATTTTTCACCAGAAGTACTGGCGCAAAGCGATACCTGAAGGCAACAACATACA 108
************************* **************** *****************
consensus_2474#0 GGAACCGCCGGCACCGGCGCAAGCACCGTCACCCCAACCGTTCAGTCCCACCGTGCCGCT 178
consensus_2474#1 GGAACCGCCGGCACCGGCGCAAGCACCGTCACCCCAACCGTTCAGTCCCACCGTGCCGCT 168
************************************************************
consensus_2474#0 CGGCAC-GGGTAACAACATCCTCAATGCGCACCTGTCC-GGTTCGTTCCAC-GGCTC-GG 234
consensus_2474#1 CGGCACTGGGTAACAACATCCTCAATGCGCACCTGTCCTGGTTCGTTCCACTGGCTCTGG 228
****** ******************************* ************ ***** **
consensus_2474#0 AAGACACGACC-GACGACGAGCTGCTCGATGCAATGCAGCGC-GACC-GGACCAAGCAGC 291
consensus_2474#1 AAGACACGACCTGACGACGAGCTGCTCGATGCAATGCAGCGCTGACCTGGACCAAGCAGC 288
*********** ****************************** **** ************
consensus_2474#0 GCCAGTTCC-GATCAGCACCAGACATGCCCTCGACCAGTGTCGGAGCGC----GTCTC-G 345
consensus_2474#1 GCCAGTTCCTGCTCGGCACCAGACATGCCCTCGACCAGTGTCTGGCTGCTGCTGTCTCTG 348
********* * ** *************************** * ** ***** *
consensus_2474#0 GGGTAGCCGCACTGCCGAACGTTAACTTCAACCCGGCGGGC-GGTGGCGCAAACGCGCCG 404
consensus_2474#1 GGGTAGCCGCACTGCCGAACGTTAACTTCAACCCGGCGGGCTGGTGGCGCAAACGCGCCG 408
***************************************** ******************
consensus_2474#0 GCAGCACCGGCAGAGTCATCGTCCGGTGGTGGTGCCCCGAGACGGTACCCCCGCCAACCG 464
consensus_2474#1 GTAGCACCAGCCGAGTCATCGTCCGGTGGTGGTGCCCCGAGACGGTACCCCCGCCAACCG 468
* ****** ** ************************************************
consensus_2474#0 A-TGCCTCGGCATGAGCGTA-GACGTAATGGCAACAAC-AATAGCCATATTGTGTAAATA 521
consensus_2474#1 NATGCCTCGGCATGAGCGTACGACGTAATGGCAACAACCAATAGCC-CANTATCTGNTGC 527
****************** ***************** ******* * * * *
consensus_2474#0 CGTGCCTAACCGAACGTGGCGGGACGTCCCTGGAGTGGCTGCGACGTTCGGAGGATGGTG 581
consensus_2474#1 TACAACTACGCTGCCCTAACCG-ACACCGCTGGCCGGCGCACGCTCCCCTGCGCA-GCTG 585
*** * * * * * ** * **** * ** * * * * * **
consensus_2474#0 GTACACACAAACACACGCGTGATTCGGTGTGCTATAGCGTTTTTCTTTTCTTCTTTCTCT 641
consensus_2474#1 GCCTGCGCACGCTNTCGCGCACCGCACTGNCT----GCGCTACCTCCACACACCACCACA 641
* * ** * **** * ** *** * * * *
consensus_2474#0 CCCGGGTGCGGAC 654
consensus_2474#1 CCCA--------- 645
***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||