cluster # 2501

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Anopheles gambiae
cluster # 2501 cluster # 2501 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2501#0 length = 1482 sequences # 1

consensus_2501#1 length = 436 sequences # 1

consensusID : consensus_2501#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1482
fasta sequence

                              [CAGAATCCCCCGAGGTTATAGTATACATGGTCGTGAAATATTTCAACTGCTCTTTACTTCAAGATGGCGGCAAACTGCTCGCCTGCTTGGTGCTGCAATTCAAATTCAGCAATAACTATGGCTTGGCTTGGTACTTCTAAGTACGTGTGCTACTCCTTCACTTGCTACTCCGTCTGGCTACACGTAAGGCACACTCACAACACAACACACAGCATTAAACACACACGGCACTTAACACTTACATTACGGCATTACTAGCACACGTTTGGATGGCAAACTTTGGACTTGGTTCACTAGGTTTCGANTCTTGGTATCTCCTAACGCGGTATANCACNTAGGTTTACCGCTTTCCCACTAATTATTAGTTTCAAACANTTTAACGGAAATTCCAAAAATTGTTTGGTTACAACACAANGGCAGGCCAACGTAAAATCAATTACTTTTANCCACACCTCCCCGGCANGTNCACTTACACAATTCCGGCGGAGCTTATATCCCCTTGGGCGGAAAAANGGCGGGGNAAAAACAACCCAGTTAACACAGTCACTTCACAATCGGGTNTNACAACCGGNTTGCACAACAACACTNAACTTTGGAANAGAAAGCCAAGGGGACCAACACAACTTACATACGANACAACCGGTTTACACACGAGACAGCAGATAATTTAAACCNCAATTTCGTGGGCTATAATTACCTCCCGCCAAATTACCTGCTACACAAATCAAACTCGAAACCTGGCGGTGTGCACCTGGCCNTTATCAAACNCCCGAACTACGATCGCTAATTTTGGCNTGCATGAAAGAATCCGAGAACGTATATTTATAACCTATACCCTAGGTTTTGGCCACCCGAAAGACCTCAAACACGNTTCAACCGCGAGNANGAGACNCGACAAAAGCCTGGCGGTTGGGNCAAACCCCACACCCCGAACTTTTTTTGGGCAAACACATCGGNNGGNGCCGACAACCNGAAGCCGCACTTTATCGGGGAACAACCAAGCGTTCTTTCCGGGACGACACAAGACTTACAAAACCACTTCGGGGGTTCAAGCAGCAGCCTTCAACCCNTTCCCCTTNCTACGTAGCCCNTCAAAAATTTACCCGTTCGGGGGATACTGTCTAAAATTATCTGTTNCTAATCTAACCCACCCCACCGCTTTATGAAAAGCTTNGGGGTTATCATACACTTATGGGAGTCGCCAAACTATTCCCCCCTCAGGATNTAATAGCCCNCCCCCTTNGGGGACGCAAATTANAGTGTACCGNCAAATTAACCCCACCTTAACCTTATTGTACCTTTAGTACACCTTATACAACCATTAAAACTAACCCTTTATGGGCGGCACAATTACACACGGGCTATGCATCCGGGACGAATGAATATAAACGCGCTTNGAAAAATTTAATCAGGAAGATACCCGGGATTGACAACCTATGGCGNTTAANTTTACATTACGGANTTAGGNTTTNCGGATACAGG]

[+] EMBL AL930770             [CAGAATCCCCCGAGGTTATAGTATACATGGTCGTGAAATATTTCAACTGCTCTTTACTTCAAGATGGCGGCAAACTGCTCGCCTGCTTGGTGCTGCAATTCAAATTCAGCAATAACTATGGCTTGGCTTGGTACTTCTAAGTACGTGTGCTACTCCTTCACTTGCTACTCCGTCTGGCTACACGTAAGGCACACTCACAACACAACACACAGCATTAAACACACACGGCACTTAACACTTACATTACGGCATTACTAGCACACGTTTGGATGGCAAACTTTGGACTTGGTTCACTAGGTTTCGANTCTTGGTATCTCCTAACGCGGTATANCACNTAGGTTTACCGCTTTCCCACTAATTATTAGTTTCAAACANTTTAACGGAAATTCCAAAAATTGTTTGGTTACAACACAANGGCAGGCCAACGTAAAATCAATTACTTTTANCCACACCTCCCCGGCANGTNCACTTACACAATTCCGGCGGAGCTTATATCCCCTTGGGCGGAAAAANGGCGGGGNAAAAACAACCCAGTTAACACAGTCACTTCACAATCGGGTNTNACAACCGGNTTGCACAACAACACTNAACTTTGGAANAGAAAGCCAAGGGGACCAACACAACTTACATACGANACAACCGGTTTACACACGAGACAGCAGATAATTTAAACCNCAATTTCGTGGGCTATAATTACCTCCCGCCAAATTACCTGCTACACAAATCAAACTCGAAACCTGGCGGTGTGCACCTGGCCNTTATCAAACNCCCGAACTACGATCGCTAATTTTGGCNTGCATGAAAGAATCCGAGAACGTATATTTATAACCTATACCCTAGGTTTTGGCCACCCGAAAGACCTCAAACACGNTTCAACCGCGAGNANGAGACNCGACAAAAGCCTGGCGGTTGGGNCAAACCCCACACCCCGAACTTTTTTTGGGCAAACACATCGGNNGGNGCCGACAACCNGAAGCCGCACTTTATCGGGGAACAACCAAGCGTTCTTTCCGGGACGACACAAGACTTACAAAACCACTTCGGGGGTTCAAGCAGCAGCCTTCAACCCNTTCCCCTTNCTACGTAGCCCNTCAAAAATTTACCCGTTCGGGGGATACTGTCTAAAATTATCTGTTNCTAATCTAACCCACCCCACCGCTTTATGAAAAGCTTNGGGGTTATCATACACTTATGGGAGTCGCCAAACTATTCCCCCCTCAGGATNTAATAGCCCNCCCCCTTNGGGGACGCAAATTANAGTGTACCGNCAAATTAACCCCACCTTAACCTTATTGTACCTTTAGTACACCTTATACAACCATTAAAACTAACCCTTTATGGGCGGCACAATTACACACGGGCTATGCATCCGGGACGAATGAATATAAACGCGCTTNGAAAAATTTAATCAGGAAGATACCCGGGATTGACAACCTATGGCGNTTAANTTTACATTACGGANTTAGGNTTTNCGGATACAGG]




>consensus_2501#0
CAGAATCCCCCGAGGTTATAGTATACATGGTCGTGAAATATTTCAACTGCTCTTTACTTC
AAGATGGCGGCAAACTGCTCGCCTGCTTGGTGCTGCAATTCAAATTCAGCAATAACTATG
GCTTGGCTTGGTACTTCTAAGTACGTGTGCTACTCCTTCACTTGCTACTCCGTCTGGCTA
CACGTAAGGCACACTCACAACACAACACACAGCATTAAACACACACGGCACTTAACACTT
ACATTACGGCATTACTAGCACACGTTTGGATGGCAAACTTTGGACTTGGTTCACTAGGTT
TCGANTCTTGGTATCTCCTAACGCGGTATANCACNTAGGTTTACCGCTTTCCCACTAATT
ATTAGTTTCAAACANTTTAACGGAAATTCCAAAAATTGTTTGGTTACAACACAANGGCAG
GCCAACGTAAAATCAATTACTTTTANCCACACCTCCCCGGCANGTNCACTTACACAATTC
CGGCGGAGCTTATATCCCCTTGGGCGGAAAAANGGCGGGGNAAAAACAACCCAGTTAACA
CAGTCACTTCACAATCGGGTNTNACAACCGGNTTGCACAACAACACTNAACTTTGGAANA
GAAAGCCAAGGGGACCAACACAACTTACATACGANACAACCGGTTTACACACGAGACAGC
AGATAATTTAAACCNCAATTTCGTGGGCTATAATTACCTCCCGCCAAATTACCTGCTACA
CAAATCAAACTCGAAACCTGGCGGTGTGCACCTGGCCNTTATCAAACNCCCGAACTACGA
TCGCTAATTTTGGCNTGCATGAAAGAATCCGAGAACGTATATTTATAACCTATACCCTAG
GTTTTGGCCACCCGAAAGACCTCAAACACGNTTCAACCGCGAGNANGAGACNCGACAAAA
GCCTGGCGGTTGGGNCAAACCCCACACCCCGAACTTTTTTTGGGCAAACACATCGGNNGG
NGCCGACAACCNGAAGCCGCACTTTATCGGGGAACAACCAAGCGTTCTTTCCGGGACGAC
ACAAGACTTACAAAACCACTTCGGGGGTTCAAGCAGCAGCCTTCAACCCNTTCCCCTTNC
TACGTAGCCCNTCAAAAATTTACCCGTTCGGGGGATACTGTCTAAAATTATCTGTTNCTA
ATCTAACCCACCCCACCGCTTTATGAAAAGCTTNGGGGTTATCATACACTTATGGGAGTC
GCCAAACTATTCCCCCCTCAGGATNTAATAGCCCNCCCCCTTNGGGGACGCAAATTANAG
TGTACCGNCAAATTAACCCCACCTTAACCTTATTGTACCTTTAGTACACCTTATACAACC
ATTAAAACTAACCCTTTATGGGCGGCACAATTACACACGGGCTATGCATCCGGGACGAAT
GAATATAAACGCGCTTNGAAAAATTTAATCAGGAAGATACCCGGGATTGACAACCTATGG
CGNTTAANTTTACATTACGGANTTAGGNTTTNCGGATACAGG

consensusID : consensus_2501#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [AAGTGCACTTCCGAAAAGAGCGATAAAGTAGTAAAAAAAATTTCGAAAGAAAGAAAAAGCTAAAGTAAAGCTTAGAAGAACTTACAAATTGAAACGAGTGATAATTGCATAGCTGGAAGATGGTTATTCTCTAAGCCACTTCTCCTGTCGATCTGTCGATCAGCTCATTGTTTATTCAGTGTGTATCTGTGTGTATCTGTGAGTGTAATCTTCCCCTCCCGCACTGTGCAACAACAAATGGTTACGCAGGCGCGACTATTTTTTTCGATATGTGTGAAATGTTTCACAGATAGTATACATGGTCGTGAAATATTTCAACTGCTCTTTACTTCAAGATGGCGGCAAACTGCTCGCCTGCTTGGTGCTGCAATTCAAATTCAGCAATAACTTGGCTTGGCTTGGTACTTCTAAGTACGTGTGCTCTCCTTCACTGCTC]

[+] EMBL BX614389             [AAGTGCACTTCCGAAAAGAGCGATAAAGTAGTAAAAAAAATTTCGAAAGAAAGAAAAAGCTAAAGTAAAGCTTAGAAGAACTTACAAATTGAAACGAGTGATAATTGCATAGCTGGAAGATGGTTATTCTCTAAGCCACTTCTCCTGTCGATCTGTCGATCAGCTCATTGTTTATTCAGTGTGTATCTGTGTGTATCTGTGAGTGTAATCTTCCCCTCCCGCACTGTGCAACAACAAATGGTTACGCAGGCGCGACTATTTTTTTCGATATGTGTGAAATGTTTCACAGATAGTATACATGGTCGTGAAATATTTCAACTGCTCTTTACTTCAAGATGGCGGCAAACTGCTCGCCTGCTTGGTGCTGCAATTCAAATTCAGCAATAACTTGGCTTGGCTTGGTACTTCTAAGTACGTGTGCTCTCCTTCACTGCTC]




>consensus_2501#1
AAGTGCACTTCCGAAAAGAGCGATAAAGTAGTAAAAAAAATTTCGAAAGAAAGAAAAAGC
TAAAGTAAAGCTTAGAAGAACTTACAAATTGAAACGAGTGATAATTGCATAGCTGGAAGA
TGGTTATTCTCTAAGCCACTTCTCCTGTCGATCTGTCGATCAGCTCATTGTTTATTCAGT
GTGTATCTGTGTGTATCTGTGAGTGTAATCTTCCCCTCCCGCACTGTGCAACAACAAATG
GTTACGCAGGCGCGACTATTTTTTTCGATATGTGTGAAATGTTTCACAGATAGTATACAT
GGTCGTGAAATATTTCAACTGCTCTTTACTTCAAGATGGCGGCAAACTGCTCGCCTGCTT
GGTGCTGCAATTCAAATTCAGCAATAACTTGGCTTGGCTTGGTACTTCTAAGTACGTGTG
CTCTCCTTCACTGCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2501#0      CAGAATCCCCCGAGGTTATAGTATACATGGTCGTGAAATATTTCAACTGCTCTTTACTTC 60
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      AAGATGGCGGCAAACTGCTCGCCTGCTTGGTGCTGCAATTCAAATTCAGCAATAACTATG 120
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      GCTTGGCTTGGTACTTCTAAGTACGTGTGCTACTCCTTCACTTGCTACTCCGTCTGGCTA 180
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      CACGTAAGGCACACTCACAACACAACACACAGCATTAAACACACACGGCACTTAACACTT 240
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      ACATTACGGCATTACTAGCACACGTTTGGATGGCAAACTTTGGACTTGGTTCACTAGGTT 300
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      TCGANTCTTGGTATCTCCTAACGCGGTATANCACNTAGGTTTACCGCTTTCCCACTAATT 360
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      ATTAGTTTCAAACANTTTAACGGAAATTCCAAAAATTGTTTGGTTACAACACAANGGCAG 420
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      GCCAACGTAAAATCAATTACTTTTANCCACACCTCCCCGGCANGTNCACTTACACAATTC 480
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      CGGCGGAGCTTATATCCCCTTGGGCGGAAAAANGGCGGGGNAAAAACAACCCAGTTAACA 540
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      CAGTCACTTCACAATCGGGTNTNACAACCGGNTTGCACAACAACACTNAACTTTGGAANA 600
consensus_2501#1      ----AAGTGCACTTCCGAAAAGAGCGATAAAGTAGTAAAAAAAATTTCGAAA--GAAAGA 54
                           * * ***   **       * *     * * * ** **   *  *    * ** *

consensus_2501#0      GAAAGCCAAGGGGA---CCAACACAACTTACATAC-GANACAACCGGTTTACACACGAGA 656
consensus_2501#1      AAAAGCTAAAGTAAAGCTTAGAAGAACTTACAAATTGAAACGAGTGATAATTGCAT-AGC 113
                       ***** ** *  *     *  * ******** *  ** ** *  * *     **  ** 

consensus_2501#0      CAGCAGATAATTTAAACCNCAATTTCGTGGGCTATAATTACCTCCCGCCAAATTACCTGC 716
consensus_2501#1      TGGAAGATGGTTATTCTCTAAGCCACTTCTCCTGTCGAT-CTGTCGATCAGCTCATTGTT 172
                        * ****  **     *  *    * *   ** *   * *   *   **  * *     

consensus_2501#0      TACACAAATCAAACTCGAA---ACCTGGCGGTGTGCACCTGGCCNTTATCAAACNCCCGA 773
consensus_2501#1      TATTCAGTGTGTATCTGTGTGTATCTGTGAGTGTAATCTT--CCCCTCCCGCACTGTGCA 230
                      **  **      *   *     * ***   ****   * *  **  *  *  **     *

consensus_2501#0      ACTACGATCGCTAATTTTGGCNTGCATGAAAGAATCCGAGAACGT-ATATTTATAACCTA 832
consensus_2501#1      ACAACAAATGGTTACGCAGGCGCGACTATTTTTTTCGATATGTGTGAAATGTTTCACAGA 290
                      ** ** *  * * *    ***  *  *       **       ** * ** * * **  *

consensus_2501#0      TACCCTAGGTTTTGGCCACCCGAAAGACCTCAAACACGNTTCAACCGCGAGNANGAGACN 892
consensus_2501#1      TAGTATACA---TGGTCGT--GAAATATTTCAACTGCTCTTTA-CTTCAAGATGGCGGCA 344
                      **   **     *** *    **** *  ****   *  ** * *  * **   * * * 

consensus_2501#0      CGACAAAAGCCTGGCGGTTGGGNCAAACCCCACACCCCGA--ACTTTTTTTGGGCAAACA 950
consensus_2501#1      AACTGCTCGCCTGCTTGGTGCTGCAATTCAAATTCAGCAATAACTTGGCTTGGCTTGGTA 404
                              *****   * **   ***  *  *  *  * *  ****   ****      *

consensus_2501#0      CATCGGNNGGNGCCGACAACCNGAAGCCGCACTTTATCGGGGAACAACCAAGCGTTCTTT 1010
consensus_2501#1      CTTCTAAGTACGTGTGCTCTCCTTCACTGCTC---------------------------- 436
                      * **       *    *   *     * ** *                            

consensus_2501#0      CCGGGACGACACAAGACTTACAAAACCACTTCGGGGGTTCAAGCAGCAGCCTTCAACCCN 1070
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      TTCCCCTTNCTACGTAGCCCNTCAAAAATTTACCCGTTCGGGGGATACTGTCTAAAATTA 1130
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      TCTGTTNCTAATCTAACCCACCCCACCGCTTTATGAAAAGCTTNGGGGTTATCATACACT 1190
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      TATGGGAGTCGCCAAACTATTCCCCCCTCAGGATNTAATAGCCCNCCCCCTTNGGGGACG 1250
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      CAAATTANAGTGTACCGNCAAATTAACCCCACCTTAACCTTATTGTACCTTTAGTACACC 1310
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      TTATACAACCATTAAAACTAACCCTTTATGGGCGGCACAATTACACACGGGCTATGCATC 1370
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      CGGGACGAATGAATATAAACGCGCTTNGAAAAATTTAATCAGGAAGATACCCGGGATTGA 1430
consensus_2501#1      ------------------------------------------------------------
                                                                                  

consensus_2501#0      CAACCTATGGCGNTTAANTTTACATTACGGANTTAGGNTTTNCGGATACAGG 1482
consensus_2501#1      ----------------------------------------------------