cluster # 2503

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Anopheles gambiae
cluster # 2503 cluster # 2503 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2503#0 length = 690 sequences # 1

consensus_2503#1 length = 444 sequences # 1

consensusID : consensus_2503#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [CCGGCAAATCGAACCAATACCTCGCCAGCTACACCTCCGAGCTGAACGGACACACGCGCCACCTGATGCGGGAGCTGCAGCATACCCGGCATGAGGTCGCACGGTTAATTGCCAACGACAACTACACTCAGGTGTCGCTGCAAAACATTGGCGACGAGGTGGAGGAACTTCGCAACCAGCTGACGGATGCACTGTCCTCGCCCGATCCCGTCACGGGCCGTCCGGTAAAACCACCAAGCGCAGCAGCCGGCAGTCGAACCGCCCCCGGCGGCTCAATCAATCCCGAGCGGCTGGTGGCGGAGGTGGCCAAACTAAGGCGCGACTTCCAGAAGATGGCCGGCGAAAACCAAACGCTCCGCCAGCAGGTGCGCCAGTACGAGAAGCTACGGCAGGAGCTGGAAGCGCTGCGCACCGACACGAACGAGACGAAGCTCGCCTTTCAGCTAATGAAGGAGGAGAACGCACTGCTCCGGCAGGATCTGAGCCAGCTCGAGCAGAAACTGCAGCAGCTGTTTAGCCGTGGAACGGCCGTCTGATAGTCCGCGGGAATGATGTTTTTTGTTCCGGTTGGGTTGAATCTGATCTGAGCGTACGCTTGATGCGTGCGCCGTTTATCTCTCACGTTATTATCTCTCTCTCTACTTAGCGCACCTTAGAGTGGCGGTTCGCCGTCTCTGGCACACCGGCAGG]

[+] EMBL BM588458             [CCGGCAAATCGAACCAATACCTCGCCAGCTACACCTCCGAGCTGAACGGACACACGCGCCACCTGATGCGGGAGCTGCAGCATACCCGGCATGAGGTCGCACGGTTAATTGCCAACGACAACTACACTCAGGTGTCGCTGCAAAACATTGGCGACGAGGTGGAGGAACTTCGCAACCAGCTGACGGATGCACTGTCCTCGCCCGATCCCGTCACGGGCCGTCCGGTAAAACCACCAAGCGCAGCAGCCGGCAGTCGAACCGCCCCCGGCGGCTCAATCAATCCCGAGCGGCTGGTGGCGGAGGTGGCCAAACTAAGGCGCGACTTCCAGAAGATGGCCGGCGAAAACCAAACGCTCCGCCAGCAGGTGCGCCAGTACGAGAAGCTACGGCAGGAGCTGGAAGCGCTGCGCACCGACACGAACGAGACGAAGCTCGCCTTTCAGCTAATGAAGGAGGAGAACGCACTGCTCCGGCAGGATCTGAGCCAGCTCGAGCAGAAACTGCAGCAGCTGTTTAGCCGTGGAACGGCCGTCTGATAGTCCGCGGGAATGATGTTTTTTGTTCCGGTTGGGTTGAATCTGATCTGAGCGTACGCTTGATGCGTGCGCCGTTTATCTCTCACGTTATTATCTCTCTCTCTACTTAGCGCACCTTAGAGTGGCGGTTCGCCGTCTCTGGCACACCGGCAGG]




>consensus_2503#0
CCGGCAAATCGAACCAATACCTCGCCAGCTACACCTCCGAGCTGAACGGACACACGCGCC
ACCTGATGCGGGAGCTGCAGCATACCCGGCATGAGGTCGCACGGTTAATTGCCAACGACA
ACTACACTCAGGTGTCGCTGCAAAACATTGGCGACGAGGTGGAGGAACTTCGCAACCAGC
TGACGGATGCACTGTCCTCGCCCGATCCCGTCACGGGCCGTCCGGTAAAACCACCAAGCG
CAGCAGCCGGCAGTCGAACCGCCCCCGGCGGCTCAATCAATCCCGAGCGGCTGGTGGCGG
AGGTGGCCAAACTAAGGCGCGACTTCCAGAAGATGGCCGGCGAAAACCAAACGCTCCGCC
AGCAGGTGCGCCAGTACGAGAAGCTACGGCAGGAGCTGGAAGCGCTGCGCACCGACACGA
ACGAGACGAAGCTCGCCTTTCAGCTAATGAAGGAGGAGAACGCACTGCTCCGGCAGGATC
TGAGCCAGCTCGAGCAGAAACTGCAGCAGCTGTTTAGCCGTGGAACGGCCGTCTGATAGT
CCGCGGGAATGATGTTTTTTGTTCCGGTTGGGTTGAATCTGATCTGAGCGTACGCTTGAT
GCGTGCGCCGTTTATCTCTCACGTTATTATCTCTCTCTCTACTTAGCGCACCTTAGAGTG
GCGGTTCGCCGTCTCTGGCACACCGGCAGG

consensusID : consensus_2503#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [ATCGCCCGAGGTTAAAACGCGCTCGTGTACGTCGATCACGACTCGCTGCCCACATGCTGCCCGGTTGCGTGTGTTCCATCTGCAAACGAACGATTGGCACTGCGAAGGGCTGGCCGAGCTGATCGGACAGCTGCGCAAGACGGGCGTCCAAGACTTCAAAACGTTCAGTGCGTTCAGCTGCAAGGAGCTGCATGTGTGGAAGGTATCTGCTGCACCGAGAACAAACCATTCGCCTGGTTACTGCAAATCGAACCAATTANCTTCGGCCAGCTTACACCTTCCGAGCTTGAACNGGACACACTGCGCCACCTGATTGCGGGAAGCTGCAGCATTACCCGGCATTGCAGGTCGCACGGTTAATTTGGCAACGACAACTACACTCAGGTGTCGCTGCAAAACATTGGCGACGAGGTGGAGGAACTTCGCAACCAGCTGACGGATGCA]

[+] EMBL AL930844             [ATCGCCCGAGGTTAAAACGCGCTCGTGTACGTCGATCACGACTCGCTGCCCACATGCTGCCCGGTTGCGTGTGTTCCATCTGCAAACGAACGATTGGCACTGCGAAGGGCTGGCCGAGCTGATCGGACAGCTGCGCAAGACGGGCGTCCAAGACTTCAAAACGTTCAGTGCGTTCAGCTGCAAGGAGCTGCATGTGTGGAAGGTATCTGCTGCACCGAGAACAAACCATTCGCCTGGTTACTGCAAATCGAACCAATTANCTTCGGCCAGCTTACACCTTCCGAGCTTGAACNGGACACACTGCGCCACCTGATTGCGGGAAGCTGCAGCATTACCCGGCATTGCAGGTCGCACGGTTAATTTGGCAACGACAACTACACTCAGGTGTCGCTGCAAAACATTGGCGACGAGGTGGAGGAACTTCGCAACCAGCTGACGGATGCA]




>consensus_2503#1
ATCGCCCGAGGTTAAAACGCGCTCGTGTACGTCGATCACGACTCGCTGCCCACATGCTGC
CCGGTTGCGTGTGTTCCATCTGCAAACGAACGATTGGCACTGCGAAGGGCTGGCCGAGCT
GATCGGACAGCTGCGCAAGACGGGCGTCCAAGACTTCAAAACGTTCAGTGCGTTCAGCTG
CAAGGAGCTGCATGTGTGGAAGGTATCTGCTGCACCGAGAACAAACCATTCGCCTGGTTA
CTGCAAATCGAACCAATTANCTTCGGCCAGCTTACACCTTCCGAGCTTGAACNGGACACA
CTGCGCCACCTGATTGCGGGAAGCTGCAGCATTACCCGGCATTGCAGGTCGCACGGTTAA
TTTGGCAACGACAACTACACTCAGGTGTCGCTGCAAAACATTGGCGACGAGGTGGAGGAA
CTTCGCAACCAGCTGACGGATGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2503#0      CCGGCAAATCGAACCAATACCTCGCCAGCTACACCTCCGAGCTGAACGGACACACGCGCC 60
consensus_2503#1      ------------------------------------------------------------
                                                                                  

consensus_2503#0      ACCTGATGCGGGAGCTGCAGCATACCCGGCATGAGGTCGCACGGTTAATTGCCAACGACA 120
consensus_2503#1      ------------------------------------------------------------
                                                                                  

consensus_2503#0      ACTACACTCAGGTGTCGCTGCAAAACATTGGCGACGAGGTGGAGGAACTTCGCAACCAGC 180
consensus_2503#1      ------------------------------------------------------------
                                                                                  

consensus_2503#0      TGACGGATGCACTGTCCTCGCCCGATCCCGTCACGGGCCGTCCGGTAAAACCACCAAGCG 240
consensus_2503#1      ----------------ATCGCCCGAGGTTAAAACGCGC--TCGTGTACGTCGATCACGAC 42
                                       ********       *** **  **  ***   * * ** *  

consensus_2503#0      CAGCAGCCGGCAGTCGAACCGCCCCCGGCGGCTCAATCAATCC-CGAGCGGCTGGTG--G 297
consensus_2503#1      TCGCTGCCCACATGCTGCCCGGTTGCGTGTGTTCCATCTGCAAACGAACGATTGGCACTG 102
                        ** ***  **  *   ***    **   * ** ***      *** **  ***    *

consensus_2503#0      CGGAGG--TGGCCAAACTAAGGCGCGACTTCCAGAAGATGGCCGGCGAAAACCAAACGCT 355
consensus_2503#1      CGAAGGGCTGGCCGAGCTGATCGGACAGCTGCGCAAGACGGGCGTCCAAGACTTCA-AAA 161
                      ** ***  ***** * ** *   *  *  * *  **** ** ** * ** **   *    

consensus_2503#0      CCGCCAGCAGGTGCGCCAGTACGAGAAGCTACGGCAGGAGCTGGAAGCGCTGCGCACCGA 415
consensus_2503#1      CGTTCAGTGCGTTCAGC--TGCAAGGAGCT---GCATGTG-TGGAAGGTATCTGCTGCAC 215
                      *   ***   ** *  *  * * ** ****   *** * * ******   *  **  *  

consensus_2503#0      CACGAACGAGACGAAGCTCGCCTTTCAGCTAATGAAGGAGGAGAACGCACTGCTCCGGCA 475
consensus_2503#1      CGAGAACAAACCA---TTCGCCTGGTTACTGCAAATCGAACCAATTANCTTCGGCCAGCT 272
                      *  **** *  *     ******     **    *  **    *      *   ** ** 

consensus_2503#0      GGATCTGAGCCAGCTCGAGCAGAAACTGCAGCAGCTGTTTAGCCGTGGAACGGCCGTCTG 535
consensus_2503#1      TACACCTTCCGAGCTTGAACNGGACACACTGC-GCCACCTGATTGCGGGA-AGCTGC--A 328
                          *    * **** ** * * *    * ** **    *    * ** *  ** *    

consensus_2503#0      ATAGTCCGCGGGAATGATGTTTTTTGTTCCGGTTGGGTTGAATCTGATCTGAGCGTACGC 595
consensus_2503#1      GCATTACCCGGCATTGCAGGTCGCA----CGGTTAATTTGGCAACGACAACTACACTCAG 384
                        * * * *** * **  * *        *****   ***     **      *   *  

consensus_2503#0      TTGATGC-GTGCGCCGTTTATCTCTCACGTTATTATCTCTCTCTCTACTTAGCGCACCTT 654
consensus_2503#1      GTGTCGCTGCAAAACATTGGCGACGAGGTGGAGGAACTTCGCAACCAGCTGACGGATGCA 444
                       **  ** *     * **     *       *  * **      * *  *  ** *    

consensus_2503#0      AGAGTGGCGGTTCGCCGTCTCTGGCACACCGGCAGG 690
consensus_2503#1      ------------------------------------