cluster # 2514

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Anopheles gambiae
cluster # 2514 cluster # 2514 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2514#0 length = 605 sequences # 1

consensus_2514#1 length = 496 sequences # 1

consensusID : consensus_2514#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [CCGAGGCTTNAAAATAGACGCGAAACGCAGTACGTGCTGGGGATAGTGCCGTTTTTCGTGAAATAATCCGTTTTATTTAGCTTAAACCCCAAACACAACAATGGCATACGACGCAGCACACGATGATGGACCAGGATTCGTCGGAATTCGGTTCTGCCAGGAATGCAACAACATGCTGTACCCGAAGGAGGACAAGGAAAACAAAATTCTGCTCTACGCCTGCCGTAACTGTGATTACAAGCAGGAGGCGGACTCGAACTGTATCTACGTGAACAAAATTATGCACGAAATCGACGAGCTAACGCACATTGTACCGGACGTGATATCGGATCCCACGCTGCCACGCACGGAGGAACACGCCTGCCCGAAGTGCTCCCACCGTGAGGCCGTCTTCTTCCAGGCCCAGACACGCCGTGCTGAGGAGGAAATGAGACTGTACTACGTGTGTACCAACTCATCCTGCTGCCATCGGTGGACGGAATGAATCGTATGGATGTTCCGTAATGGCAAGTTGCTCGTACAGGTATTACTGATGGCAACTAACATATAATGTCTGTATAANATACTAATATAATATAATTTAACAACAAAAAAAAAAAACAAAC]

[+] EMBL AL930967             [CCGAGGCTTNAAAATAGACGCGAAACGCAGTACGTGCTGGGGATAGTGCCGTTTTTCGTGAAATAATCCGTTTTATTTAGCTTAAACCCCAAACACAACAATGGCATACGACGCAGCACACGATGATGGACCAGGATTCGTCGGAATTCGGTTCTGCCAGGAATGCAACAACATGCTGTACCCGAAGGAGGACAAGGAAAACAAAATTCTGCTCTACGCCTGCCGTAACTGTGATTACAAGCAGGAGGCGGACTCGAACTGTATCTACGTGAACAAAATTATGCACGAAATCGACGAGCTAACGCACATTGTACCGGACGTGATATCGGATCCCACGCTGCCACGCACGGAGGAACACGCCTGCCCGAAGTGCTCCCACCGTGAGGCCGTCTTCTTCCAGGCCCAGACACGCCGTGCTGAGGAGGAAATGAGACTGTACTACGTGTGTACCAACTCATCCTGCTGCCATCGGTGGACGGAATGAATCGTATGGATGTTCCGTAATGGCAAGTTGCTCGTACAGGTATTACTGATGGCAACTAACATATAATGTCTGTATAANATACTAATATAATATAATTTAACAACAAAAAAAAAAAACAAAC]




>consensus_2514#0
CCGAGGCTTNAAAATAGACGCGAAACGCAGTACGTGCTGGGGATAGTGCCGTTTTTCGTG
AAATAATCCGTTTTATTTAGCTTAAACCCCAAACACAACAATGGCATACGACGCAGCACA
CGATGATGGACCAGGATTCGTCGGAATTCGGTTCTGCCAGGAATGCAACAACATGCTGTA
CCCGAAGGAGGACAAGGAAAACAAAATTCTGCTCTACGCCTGCCGTAACTGTGATTACAA
GCAGGAGGCGGACTCGAACTGTATCTACGTGAACAAAATTATGCACGAAATCGACGAGCT
AACGCACATTGTACCGGACGTGATATCGGATCCCACGCTGCCACGCACGGAGGAACACGC
CTGCCCGAAGTGCTCCCACCGTGAGGCCGTCTTCTTCCAGGCCCAGACACGCCGTGCTGA
GGAGGAAATGAGACTGTACTACGTGTGTACCAACTCATCCTGCTGCCATCGGTGGACGGA
ATGAATCGTATGGATGTTCCGTAATGGCAAGTTGCTCGTACAGGTATTACTGATGGCAAC
TAACATATAATGTCTGTATAANATACTAATATAATATAATTTAACAACAAAAAAAAAAAA
CAAAC

consensusID : consensus_2514#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAAATAGACGCGAAACGCAGTACGTGCCGGAATAGTGCTGTTTTTCGTGAAATAATCCGTTTTATTTAGCTTAAACCCCAAACACAACAATGGCATACGATGCAGCACACGATGATGGACCAGGATTCGTCGGAATTCGGTTCTGCCAGGAGTGCAACAACATGCTGTACCCGAAGGAGGACAAGGAAAACAAAATTCTGCTCTACGCCTGCCGTAACTGTGATTACAAGCAGGAGGCGGACTCGAACTGTATCTACGTGAACAAAATTATGCACGAAATCGACGAGCTAACGCACATTGTACCGGACGTGATATCGGATCCCACGCTGCCACGCACGGAGGAACACGCCTGCCCGAAATGCTCCCACCGTGAGGGCGTCTTCTTCCAGGCCCAGACACGCCGTGCTGAGGAGGAAATGAGACTGTACTACGTGTGCACCAACTC]

[+] EMBL BM584445             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAAATAGACGCGAAACGCAGTACGTGCCGGAATAGTGCTGTTTTTCGTGAAATAATCCGTTTTATTTAGCTTAAACCCCAAACACAACAATGGCATACGATGCAGCACACGATGATGGACCAGGATTCGTCGGAATTCGGTTCTGCCAGGAGTGCAACAACATGCTGTACCCGAAGGAGGACAAGGAAAACAAAATTCTGCTCTACGCCTGCCGTAACTGTGATTACAAGCAGGAGGCGGACTCGAACTGTATCTACGTGAACAAAATTATGCACGAAATCGACGAGCTAACGCACATTGTACCGGACGTGATATCGGATCCCACGCTGCCACGCACGGAGGAACACGCCTGCCCGAAATGCTCCCACCGTGAGGGCGTCTTCTTCCAGGCCCAGACACGCCGTGCTGAGGAGGAAATGAGACTGTACTACGTGTGCACCAACTC]




>consensus_2514#1
CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAAATAGAC
GCGAAACGCAGTACGTGCCGGAATAGTGCTGTTTTTCGTGAAATAATCCGTTTTATTTAG
CTTAAACCCCAAACACAACAATGGCATACGATGCAGCACACGATGATGGACCAGGATTCG
TCGGAATTCGGTTCTGCCAGGAGTGCAACAACATGCTGTACCCGAAGGAGGACAAGGAAA
ACAAAATTCTGCTCTACGCCTGCCGTAACTGTGATTACAAGCAGGAGGCGGACTCGAACT
GTATCTACGTGAACAAAATTATGCACGAAATCGACGAGCTAACGCACATTGTACCGGACG
TGATATCGGATCCCACGCTGCCACGCACGGAGGAACACGCCTGCCCGAAATGCTCCCACC
GTGAGGGCGTCTTCTTCCAGGCCCAGACACGCCGTGCTGAGGAGGAAATGAGACTGTACT
ACGTGTGCACCAACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2514#0      ----------------------------------------CCGAG-GCTTNAAAATAGAC 19
consensus_2514#1      CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAAATAGAC 60
                                                              **  * *    *********

consensus_2514#0      GCGAAACGCAGTACGTGCTGGGGATAGTGCCGTTTTTCGTGAAATAATCCGTTTTATTTA 79
consensus_2514#1      GCGAAACGCAGTACGTGCCGGA-ATAGTGCTGTTTTTCGTGAAATAATCCGTTTTATTTA 119
                      ****************** **  ******* *****************************

consensus_2514#0      GCTTAAACCCCAAACACAACAATGGCATACGACGCAGCACACGATGATGGACCAGGATTC 139
consensus_2514#1      GCTTAAACCCCAAACACAACAATGGCATACGATGCAGCACACGATGATGGACCAGGATTC 179
                      ******************************** ***************************

consensus_2514#0      GTCGGAATTCGGTTCTGCCAGGAATGCAACAACATGCTGTACCCGAAGGAGGACAAGGAA 199
consensus_2514#1      GTCGGAATTCGGTTCTGCCAGGAGTGCAACAACATGCTGTACCCGAAGGAGGACAAGGAA 239
                      *********************** ************************************

consensus_2514#0      AACAAAATTCTGCTCTACGCCTGCCGTAACTGTGATTACAAGCAGGAGGCGGACTCGAAC 259
consensus_2514#1      AACAAAATTCTGCTCTACGCCTGCCGTAACTGTGATTACAAGCAGGAGGCGGACTCGAAC 299
                      ************************************************************

consensus_2514#0      TGTATCTACGTGAACAAAATTATGCACGAAATCGACGAGCTAACGCACATTGTACCGGAC 319
consensus_2514#1      TGTATCTACGTGAACAAAATTATGCACGAAATCGACGAGCTAACGCACATTGTACCGGAC 359
                      ************************************************************

consensus_2514#0      GTGATATCGGATCCCACGCTGCCACGCACGGAGGAACACGCCTGCCCGAAGTGCTCCCAC 379
consensus_2514#1      GTGATATCGGATCCCACGCTGCCACGCACGGAGGAACACGCCTGCCCGAAATGCTCCCAC 419
                      ************************************************** *********

consensus_2514#0      CGTGAGGCCGTCTTCTTCCAGGCCCAGACACGCCGTGCTGAGGAGGAAATGAGACTGTAC 439
consensus_2514#1      CGTGAGGGCGTCTTCTTCCAGGCCCAGACACGCCGTGCTGAGGAGGAAATGAGACTGTAC 479
                      ******* ****************************************************

consensus_2514#0      TACGTGTGTACCAACTCATCCTGCTGCCATCGGTGGACGGAATGAATCGTATGGATGTTC 499
consensus_2514#1      TACGTGTGCACCAACTC------------------------------------------- 496
                      ******** ********                                           

consensus_2514#0      CGTAATGGCAAGTTGCTCGTACAGGTATTACTGATGGCAACTAACATATAATGTCTGTAT 559
consensus_2514#1      ------------------------------------------------------------
                                                                                  

consensus_2514#0      AANATACTAATATAATATAATTTAACAACAAAAAAAAAAAACAAAC 605
consensus_2514#1      ----------------------------------------------