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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2518#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[CCCGAGGTTTAATTGCAACTGTGGTCGCTTCACAACGTTTAGTTAAATTAATTGCNCGTGCATGTGCTCTCTATTTGTAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCAGCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTCAATGAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATAATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTTCATTTCAGGTATATCGAATGTTTAGAGGGAACTAGGTTTTACACCAAATGCAGCTACATTAAACATACACATACACAAATGCAAACACATACACATAGTNCGTAAACAAAAATAGACNAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACACATTTATAGGAATCTACTATATGCACGTATACCAGAAAGTGGAGCACATAAGAAACAGAGAACAAACAAGAAACACAGCGAGAAAGAAAGGAAAGAACATAGAAAACCCATTGTACTACTGATGGANGCATACTGTACGCGGGTTGGGAAGCATGCTATCTTTCTTCCACCATGACCCCATCATGCATTTGGCCATTGGTGTAGGCATTA]
[+] EMBL AL932262 [CCCGAGGTTTAATTGCAACTGTGGTCGCTTCACAACGTTTAGTTAAATTAATTGCNCGTGCATGTGCTCTCTATTTGTAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCAGCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTCAATGAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATAATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTTCATTTCAGGTATATCGAATGTTTAGAGGGAACTAGGTTTTACACCAAATGCAGCTACATTAAACATACACATACACAAATGCAAACACATACACATAGTNCGTAAACAAAAATAGACNAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACACATTTATAGGAATCTACTATATGCACGTATACCAGAAAGTGGAGCACATAAGAAACAGAGAACAAACAAGAAACACAGCGAGAAAGAAAGGAAAGAACATAGAAAACCCATTGTACTACTGATGGANGCATACTGTACGCGGGTTGGGAAGCATGCTATCTTTCTTCCACCATGACCCCATCATGCATTTGGCCATTGGTGTAGGCATTA]
consensusID : consensus_2518#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[AGAATCCCCCGAGGTTTGCATGTGCTTTCTATTTTGTCAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCAGCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTAAATGAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATAATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTTTATTTTTTTAGGTATATCGAATGTTTAGGAGGGAACTAGGTTTTACACCAAATGCAGCTACATTAAACATACACATACACAAATGCAAACACATACACATAGTTCGTTAAACAAAAATAGACAAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACACATTTATAGGAATCTACTATATGCACGTATACAAGAAAGTGGAGCAAATAAGAAAAGAGAACAAACA]
[+] EMBL AL931031 [AGAATCCCCCGAGGTTTGCATGTGCTTTCTATTTTGTCAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCAGCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTAAATGAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATAATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTTTATTTTTTTAGGTATATCGAATGTTTAGGAGGGAACTAGGTTTTACACCAAATGCAGCTACATTAAACATACACATACACAAATGCAAACACATACACATAGTTCGTTAAACAAAAATAGACAAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACACATTTATAGGAATCTACTATATGCACGTATACAAGAAAGTGGAGCAAATAAGAAAAGAGAACAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2518#0 CCCGAGGTTTAATTGCAACTGTGGTCGCTTCACAACGTTTAGTTAAATTAATTGCN-CGT 59
consensus_2518#1 -------------------------------------------AGAATCCCCCGAGGTTT 17
*** * *
consensus_2518#0 GCATGTGCTCTCTATTTG--TAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCA 117
consensus_2518#1 GCATGTGCTTTCTATTTTGTCAATTTCATTTTAATCACCCAAAAAACAAGAGCGAGCTCA 77
********* ******* ***************************************
consensus_2518#0 GCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTCAAT 177
consensus_2518#1 GCTCAGCAAATTTTATCAACCAATGGACAATAATGAAGGGCAAAAGTAAAGGAAGTAAAT 137
******************************************************** ***
consensus_2518#0 GAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATA 237
consensus_2518#1 GAGGGAAAAACTGAAAATCGTGCATCGAAAACTGGTGGTTAGACACACTTGGACACTATA 197
************************************************************
consensus_2518#0 ATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTT 297
consensus_2518#1 ATTCGGGAAAAAACGGATCTAAAACGGTCTTCTAAAAAGCAATTCGATACGGAATAGTTT 257
************************************************************
consensus_2518#0 CATTTC---AGGTATATCGAATGTTTAG-AGGGAACTAGGTTTTACACCAAATGCAGCTA 353
consensus_2518#1 TATTTTTTTAGGTATATCGAATGTTTAGGAGGGAACTAGGTTTTACACCAAATGCAGCTA 317
**** ******************* *******************************
consensus_2518#0 CATTAAACATACACATACACAAATGCAAACACATACACATAGTNCGT-AAACAAAAATAG 412
consensus_2518#1 CATTAAACATACACATACACAAATGCAAACACATACACATAGTTCGTTAAACAAAAATAG 377
******************************************* *** ************
consensus_2518#0 ACNAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACA 472
consensus_2518#1 ACAAATCTACACGCGCACACACATACAAACAAACACAAACTTAAGTGAAACAATTATACA 437
** *********************************************************
consensus_2518#0 CATTTATAGGAATCTACTATATGCACGTATACCAGAAAGTGGAGCACATAAGAAACAGAG 532
consensus_2518#1 CATTTATAGGAATCTACTATATGCACGTATACAAGAAAGTGGAGCAAATAAGAAA-AGAG 496
******************************** ************* ******** ****
consensus_2518#0 AACAAACAAGAAACACAGCGAGAAAGAAAGGAAAGAACATAGAAAACCCATTGTACTACT 592
consensus_2518#1 AACAAACA---------------------------------------------------- 504
********
consensus_2518#0 GATGGANGCATACTGTACGCGGGTTGGGAAGCATGCTATCTTTCTTCCACCATGACCCCA 652
consensus_2518#1 ------------------------------------------------------------
consensus_2518#0 TCATGCATTTGGCCATTGGTGTAGGCATTA 682
consensus_2518#1 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||