cluster # 2521

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2521 cluster # 2521 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2521#0 length = 445 sequences # 1

consensus_2521#1 length = 432 sequences # 1

consensusID : consensus_2521#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence

                              [TTTATGGTCAGAGGAGAGGCATGATGATTGGAGACAATTCAATCTTCTGGCAGGAGCATCGGTACCGCAAAGGCGAAGCTACGTGGAAGAATTCAATATCAGCGTGAAAAGTTCTGTACAGTACTACGTTCATGGTAAAGACTGCAGTGTAGGGGAAAATGTTGCTCACAACGATTTGAAAGGCATCAGTAACGATCCGACACTGGTGCCAGGATTGTGCCAGGTTGACTATGGAGGTCCAGTAATGACGAAATACTACGATGAACAGTTCAAGGTACATGGTATTGTTTCCCGTTTAACGCAGGGCTGCGGAAGCAATGTGATCTTTACCAGTTTGGCACCTCATAGGCAATGGTTGGAATCGATCATCTTTAAACAGTTGAATGAGAGGCTTGTATTTAGTGATAAGTGAAGTTAAAACAATCGTAATAAAATAGCAAATAGT]

[+] EMBL BX612320             [TTTATGGTCAGAGGAGAGGCATGATGATTGGAGACAATTCAATCTTCTGGCAGGAGCATCGGTACCGCAAAGGCGAAGCTACGTGGAAGAATTCAATATCAGCGTGAAAAGTTCTGTACAGTACTACGTTCATGGTAAAGACTGCAGTGTAGGGGAAAATGTTGCTCACAACGATTTGAAAGGCATCAGTAACGATCCGACACTGGTGCCAGGATTGTGCCAGGTTGACTATGGAGGTCCAGTAATGACGAAATACTACGATGAACAGTTCAAGGTACATGGTATTGTTTCCCGTTTAACGCAGGGCTGCGGAAGCAATGTGATCTTTACCAGTTTGGCACCTCATAGGCAATGGTTGGAATCGATCATCTTTAAACAGTTGAATGAGAGGCTTGTATTTAGTGATAAGTGAAGTTAAAACAATCGTAATAAAATAGCAAATAGT]




>consensus_2521#0
TTTATGGTCAGAGGAGAGGCATGATGATTGGAGACAATTCAATCTTCTGGCAGGAGCATC
GGTACCGCAAAGGCGAAGCTACGTGGAAGAATTCAATATCAGCGTGAAAAGTTCTGTACA
GTACTACGTTCATGGTAAAGACTGCAGTGTAGGGGAAAATGTTGCTCACAACGATTTGAA
AGGCATCAGTAACGATCCGACACTGGTGCCAGGATTGTGCCAGGTTGACTATGGAGGTCC
AGTAATGACGAAATACTACGATGAACAGTTCAAGGTACATGGTATTGTTTCCCGTTTAAC
GCAGGGCTGCGGAAGCAATGTGATCTTTACCAGTTTGGCACCTCATAGGCAATGGTTGGA
ATCGATCATCTTTAAACAGTTGAATGAGAGGCTTGTATTTAGTGATAAGTGAAGTTAAAA
CAATCGTAATAAAATAGCAAATAGT

consensusID : consensus_2521#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [GATCGCCGAGGTNAATTGTATCGGTTGTTTATGGTCAGAGGAGAGGCATGGGTGACTGGAGACAAGTCAATCTTCTGGCTGGAGCATCGGTACCGCAAATGCGAAGCTACGTGGAAGAATTCAACATCAGCGTGAAAAGTTCTGTACAATACGACGTTGATGGTTACGACTGCAGTGTAGGGGAAAATGTTGCTCACAACGATTTGAAATGTATCAGTAACGATCGGACACTGGTACCAGGATTGTGTGAGGTTGACTATGGAGGTCCGGTATTGACGGATTACTATGATATTCACTACGATGAACAGTTTAAGGTGCTTGGTATTCTGTCCCGTTTGACACAGGGCTGCGGAAGCGAAGTGATCTTCACCAGTTTGGCACCTCATAGGCAATGGTTGGAATCGATAATTTTCAAAGGTAGCCAAAAAGGGA]

[+] EMBL AL931065             [GATCGCCGAGGTNAATTGTATCGGTTGTTTATGGTCAGAGGAGAGGCATGGGTGACTGGAGACAAGTCAATCTTCTGGCTGGAGCATCGGTACCGCAAATGCGAAGCTACGTGGAAGAATTCAACATCAGCGTGAAAAGTTCTGTACAATACGACGTTGATGGTTACGACTGCAGTGTAGGGGAAAATGTTGCTCACAACGATTTGAAATGTATCAGTAACGATCGGACACTGGTACCAGGATTGTGTGAGGTTGACTATGGAGGTCCGGTATTGACGGATTACTATGATATTCACTACGATGAACAGTTTAAGGTGCTTGGTATTCTGTCCCGTTTGACACAGGGCTGCGGAAGCGAAGTGATCTTCACCAGTTTGGCACCTCATAGGCAATGGTTGGAATCGATAATTTTCAAAGGTAGCCAAAAAGGGA]




>consensus_2521#1
GATCGCCGAGGTNAATTGTATCGGTTGTTTATGGTCAGAGGAGAGGCATGGGTGACTGGA
GACAAGTCAATCTTCTGGCTGGAGCATCGGTACCGCAAATGCGAAGCTACGTGGAAGAAT
TCAACATCAGCGTGAAAAGTTCTGTACAATACGACGTTGATGGTTACGACTGCAGTGTAG
GGGAAAATGTTGCTCACAACGATTTGAAATGTATCAGTAACGATCGGACACTGGTACCAG
GATTGTGTGAGGTTGACTATGGAGGTCCGGTATTGACGGATTACTATGATATTCACTACG
ATGAACAGTTTAAGGTGCTTGGTATTCTGTCCCGTTTGACACAGGGCTGCGGAAGCGAAG
TGATCTTCACCAGTTTGGCACCTCATAGGCAATGGTTGGAATCGATAATTTTCAAAGGTA
GCCAAAAAGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2521#0      ---------------------------TTTATGGTCAGAGGAGAGGCATGA-TGATTGGA 32
consensus_2521#1      GATCGCCGAGGTNAATTGTATCGGTTGTTTATGGTCAGAGGAGAGGCATGGGTGACTGGA 60
                                                 ***********************  *** ****

consensus_2521#0      GACAATTCAATCTTCTGGCAGGAGCATCGGTACCGCAAAGGCGAAGCTACGTGGAAGAAT 92
consensus_2521#1      GACAAGTCAATCTTCTGGCTGGAGCATCGGTACCGCAAATGCGAAGCTACGTGGAAGAAT 120
                      ***** ************* ******************* ********************

consensus_2521#0      TCAATATCAGCGTGAAAAGTTCTGTACAGTACTACGTTCATGGTAAAGACTGCAGTGTAG 152
consensus_2521#1      TCAACATCAGCGTGAAAAGTTCTGTACAATACGACGTTGATGGTTACGACTGCAGTGTAG 180
                      **** *********************** *** ***** ***** * *************

consensus_2521#0      GGGAAAATGTTGCTCACAACGATTTGAAAGGCATCAGTAACGATCCGACACTGGTGCCAG 212
consensus_2521#1      GGGAAAATGTTGCTCACAACGATTTGAAATGTATCAGTAACGATCGGACACTGGTACCAG 240
                      ***************************** * ************* ********* ****

consensus_2521#0      GATTGTGCCAGGTTGACTATGGAGGTCCAGTAATGACGAAATACTA------------CG 260
consensus_2521#1      GATTGTGTGAGGTTGACTATGGAGGTCCGGTATTGACGGATTACTATGATATTCACTACG 300
                      *******  ******************* *** ***** * *****            **

consensus_2521#0      ATGAACAGTTCAAGGTACATGGTATTGTTTCCCGTTTAACGCAGGGCTGCGGAAGCAATG 320
consensus_2521#1      ATGAACAGTTTAAGGTGCTTGGTATTCTGTCCCGTTTGACACAGGGCTGCGGAAGCGAAG 360
                      ********** ***** * ******* * ******** ** *************** * *

consensus_2521#0      TGATCTTTACCAGTTTGGCACCTCATAGGCAATGGTTGGAATCGATCATCTTTAAA--CA 378
consensus_2521#1      TGATCTTCACCAGTTTGGCACCTCATAGGCAATGGTTGGAATCGATAATTTTCAAAGGTA 420
                      ******* ************************************** ** ** ***   *

consensus_2521#0      GTTGAATGAGAGGCTTGTATTTAGTGATAAGTGAAGTTAAAACAATCGTAATAAAATAGC 438
consensus_2521#1      GCCAAAAAGGGA------------------------------------------------ 432
                      *   **   *                                                  

consensus_2521#0      AAATAGT 445
consensus_2521#1      -------