cluster # 2528

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Anopheles gambiae
cluster # 2528 cluster # 2528 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2528#0 length = 684 sequences # 1

consensus_2528#1 length = 374 sequences # 1

consensusID : consensus_2528#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [CCGCCCACGCGTCCGGCCTTTTACGACTACGGAACGGTAAGATGGAGTTAAAATGTAAAGTGTTTCTACGATACTGTACCTGTTTCGCCGTGATAGGAGCGCTTCTCGTTTGGCCGGCTCCCGTTCACAGTGCCGTAGTTGTGATTGGTGCACGTCCGTACCTAGAACGAGTTGCAAAACGCGTGGTGGAAATATTGGAAGGGAGATACATTTCTGGAAACTCGCTGCCAATTGCAGACTACGTAGCTCCTATACAACTAACCGACAAAGGCCTTTCCATTACTGGCAATGTATCGTTTCATTCGGCCTTTCTCGCCAAGATCGATTCGATCGAGTTCGACGCACAAAAGTTTTCGGAAATCTTTCTCAACACGGAGGTAACCGTACAAGGAGCACTGAAGTGGCACGGCATTGGCGTGGTGCTGGACTTTGCCGCCAATCTGGAGGAGTACAACGGGACGGGCACACTGTACGTCACGTACAATCAGTTCGATTTCCCGCTAAAGGTGACGAAACCTTTCAATTCCACCGAACCGACCGGCTCGCTCCAGTTCATGTCGATAGACAATTCGAACAAGATCGTCACGGTGGGCTATCCAAACAACAAGTACGTGCAGCTAATTTCACGCGCGATAATGACAAACTTCGATTTTCGCGATTACATGATAGCTTCGTTCCGGAAAT]

[+] EMBL BM612052             [CCGCCCACGCGTCCGGCCTTTTACGACTACGGAACGGTAAGATGGAGTTAAAATGTAAAGTGTTTCTACGATACTGTACCTGTTTCGCCGTGATAGGAGCGCTTCTCGTTTGGCCGGCTCCCGTTCACAGTGCCGTAGTTGTGATTGGTGCACGTCCGTACCTAGAACGAGTTGCAAAACGCGTGGTGGAAATATTGGAAGGGAGATACATTTCTGGAAACTCGCTGCCAATTGCAGACTACGTAGCTCCTATACAACTAACCGACAAAGGCCTTTCCATTACTGGCAATGTATCGTTTCATTCGGCCTTTCTCGCCAAGATCGATTCGATCGAGTTCGACGCACAAAAGTTTTCGGAAATCTTTCTCAACACGGAGGTAACCGTACAAGGAGCACTGAAGTGGCACGGCATTGGCGTGGTGCTGGACTTTGCCGCCAATCTGGAGGAGTACAACGGGACGGGCACACTGTACGTCACGTACAATCAGTTCGATTTCCCGCTAAAGGTGACGAAACCTTTCAATTCCACCGAACCGACCGGCTCGCTCCAGTTCATGTCGATAGACAATTCGAACAAGATCGTCACGGTGGGCTATCCAAACAACAAGTACGTGCAGCTAATTTCACGCGCGATAATGACAAACTTCGATTTTCGCGATTACATGATAGCTTCGTTCCGGAAAT]




>consensus_2528#0
CCGCCCACGCGTCCGGCCTTTTACGACTACGGAACGGTAAGATGGAGTTAAAATGTAAAG
TGTTTCTACGATACTGTACCTGTTTCGCCGTGATAGGAGCGCTTCTCGTTTGGCCGGCTC
CCGTTCACAGTGCCGTAGTTGTGATTGGTGCACGTCCGTACCTAGAACGAGTTGCAAAAC
GCGTGGTGGAAATATTGGAAGGGAGATACATTTCTGGAAACTCGCTGCCAATTGCAGACT
ACGTAGCTCCTATACAACTAACCGACAAAGGCCTTTCCATTACTGGCAATGTATCGTTTC
ATTCGGCCTTTCTCGCCAAGATCGATTCGATCGAGTTCGACGCACAAAAGTTTTCGGAAA
TCTTTCTCAACACGGAGGTAACCGTACAAGGAGCACTGAAGTGGCACGGCATTGGCGTGG
TGCTGGACTTTGCCGCCAATCTGGAGGAGTACAACGGGACGGGCACACTGTACGTCACGT
ACAATCAGTTCGATTTCCCGCTAAAGGTGACGAAACCTTTCAATTCCACCGAACCGACCG
GCTCGCTCCAGTTCATGTCGATAGACAATTCGAACAAGATCGTCACGGTGGGCTATCCAA
ACAACAAGTACGTGCAGCTAATTTCACGCGCGATAATGACAAACTTCGATTTTCGCGATT
ACATGATAGCTTCGTTCCGGAAAT

consensusID : consensus_2528#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [CGCCGAGTTACTGTTTCGCGTGATAGGAGCGCTTCTCGTTTGGCGGGCTCCCGGTTCACAGTGCGTATTGTGATTGGTGCACGTTCGTACCTAGAACGAGTTGCAAACGCGTGGTGGAAATATTAGAAGGGAGGTACATTTTCTGGAAACTCGCTGCAATTGCAGACTACGTAGCTCCTATACAACTAACCGACAAAGGCCTTTCCATTACTGGCAATGTATCATTTCATTCGGCCTTTCTCGCCAAGATCGATTCGATCGAGTTCGATGCACAGAAGTTCGGAAATCTTTCTCAACACGGAGGTAACCGTACAAGGAGCACTGAAGTGGACGGATTGGGTGGTGCTGGACTTTGGCGCCAATCTGGGAGGAGT]

[+] EMBL AL931148             [CGCCGAGTTACTGTTTCGCGTGATAGGAGCGCTTCTCGTTTGGCGGGCTCCCGGTTCACAGTGCGTATTGTGATTGGTGCACGTTCGTACCTAGAACGAGTTGCAAACGCGTGGTGGAAATATTAGAAGGGAGGTACATTTTCTGGAAACTCGCTGCAATTGCAGACTACGTAGCTCCTATACAACTAACCGACAAAGGCCTTTCCATTACTGGCAATGTATCATTTCATTCGGCCTTTCTCGCCAAGATCGATTCGATCGAGTTCGATGCACAGAAGTTCGGAAATCTTTCTCAACACGGAGGTAACCGTACAAGGAGCACTGAAGTGGACGGATTGGGTGGTGCTGGACTTTGGCGCCAATCTGGGAGGAGT]




>consensus_2528#1
CGCCGAGTTACTGTTTCGCGTGATAGGAGCGCTTCTCGTTTGGCGGGCTCCCGGTTCACA
GTGCGTATTGTGATTGGTGCACGTTCGTACCTAGAACGAGTTGCAAACGCGTGGTGGAAA
TATTAGAAGGGAGGTACATTTTCTGGAAACTCGCTGCAATTGCAGACTACGTAGCTCCTA
TACAACTAACCGACAAAGGCCTTTCCATTACTGGCAATGTATCATTTCATTCGGCCTTTC
TCGCCAAGATCGATTCGATCGAGTTCGATGCACAGAAGTTCGGAAATCTTTCTCAACACG
GAGGTAACCGTACAAGGAGCACTGAAGTGGACGGATTGGGTGGTGCTGGACTTTGGCGCC
AATCTGGGAGGAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2528#0      CCGCCCACGCGTCCGGCCTTTTACGACTACGGAACGGTAAGATGGAGTTAAAATGTAAAG 60
consensus_2528#1      ------------------------------------------------------------
                                                                                  

consensus_2528#0      TGTTTCTACGATACTGTACCTGTTTCGCCGTGATAGGAGCGCTTCTCGTTTGGCCGGCTC 120
consensus_2528#1      --------CGCCGAGTTAC-TGTTTCGC-GTGATAGGAGCGCTTCTCGTTTGGCGGGCTC 50
                              **      *** ******** ************************* *****

consensus_2528#0      CCG-TTCACAGTGCCGTAGTTGTGATTGGTGCACGTCCGTACCTAGAACGAGTTGCAAAA 179
consensus_2528#1      CCGGTTCACAGTGC-GTA-TTGTGATTGGTGCACGTTCGTACCTAGAACGAGTTGCAAA- 107
                      *** ********** *** ***************** ********************** 

consensus_2528#0      CGCGTGGTGGAAATATTGGAAGGGAGATACATTT-CTGGAAACTCGCTGCCAATTGCAGA 238
consensus_2528#1      CGCGTGGTGGAAATATTAGAAGGGAGGTACATTTTCTGGAAACTCGCTGC-AATTGCAGA 166
                      ***************** ******** ******* *************** *********

consensus_2528#0      CTACGTAGCTCCTATACAACTAACCGACAAAGGCCTTTCCATTACTGGCAATGTATCGTT 298
consensus_2528#1      CTACGTAGCTCCTATACAACTAACCGACAAAGGCCTTTCCATTACTGGCAATGTATCATT 226
                      ********************************************************* **

consensus_2528#0      TCATTCGGCCTTTCTCGCCAAGATCGATTCGATCGAGTTCGACGCACAAAAGTTTTCGGA 358
consensus_2528#1      TCATTCGGCCTTTCTCGCCAAGATCGATTCGATCGAGTTCGATGCACAGAAGTT--CGGA 284
                      ****************************************** ***** *****  ****

consensus_2528#0      AATCTTTCTCAACACGGAGGTAACCGTACAAGGAGCACTGAAGTGGCACGGCATTGGCGT 418
consensus_2528#1      AATCTTTCTCAACACGGAGGTAACCGTACAAGGAGCACTGAAGTGG-ACGG-ATTGG-GT 341
                      ********************************************** **** ***** **

consensus_2528#0      GGTGCTGGACTTTGCCGCCAATCTGG-AGGAGTACAACGGGACGGGCACACTGTACGTCA 477
consensus_2528#1      GGTGCTGGACTTTGGCGCCAATCTGGGAGGAGT--------------------------- 374
                      ************** *********** ******                           

consensus_2528#0      CGTACAATCAGTTCGATTTCCCGCTAAAGGTGACGAAACCTTTCAATTCCACCGAACCGA 537
consensus_2528#1      ------------------------------------------------------------
                                                                                  

consensus_2528#0      CCGGCTCGCTCCAGTTCATGTCGATAGACAATTCGAACAAGATCGTCACGGTGGGCTATC 597
consensus_2528#1      ------------------------------------------------------------
                                                                                  

consensus_2528#0      CAAACAACAAGTACGTGCAGCTAATTTCACGCGCGATAATGACAAACTTCGATTTTCGCG 657
consensus_2528#1      ------------------------------------------------------------
                                                                                  

consensus_2528#0      ATTACATGATAGCTTCGTTCCGGAAAT 684
consensus_2528#1      ---------------------------