cluster # 2564

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Anopheles gambiae
cluster # 2564 cluster # 2564 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2564#0 length = 558 sequences # 1

consensus_2564#1 length = 408 sequences # 1

consensusID : consensus_2564#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [CCCGAGGTNTAAAAAAAAAGAAAAAATTGAAAGCGACAAAAAACAAACTCCCCACGCGTAGGCTTCAACACGAATTGATGGAACAAGATACAAAATTAGTAAGAGAGAAAGAGAGAGAAAGCATGTGTAGCAGTTAGAAGCCCCCGGGAGGGGGTCCCATTTGTTATTGTTTTTTTTATCTATTATTGCTATTATCTCTTTCGCCAGCCACCGTGCGTTTGTCTCTTTTTCCTATAAGAAAAGGTTTATTTTAATACTTATGTTGTTGTTTTTTGGGTTCTTTTAAATCTGTTCGCCAAATTACACGTAACTGTAGATGTTTGTGTGTGCGTGTGTGCTTGTGTGTACCGGTTGTGTCGTGCGTTCGTGTGCATAGTGTATGTGCATCATATTTCCGATTATAGCTTTTCCCTTTTCGTTTCCAGTTTTCCCATTTGTTTTTGAATGTTTATACACACCATCCTCAAACCCCTCCGTCAGCCCCACTTGACAAACAATTGCGTGTGTATTGAAACTAATGACACTGTGTGCGTGTGTATGTGTGTGTGTGTGTGTGTG]

[+] EMBL AL931596             [CCCGAGGTNTAAAAAAAAAGAAAAAATTGAAAGCGACAAAAAACAAACTCCCCACGCGTAGGCTTCAACACGAATTGATGGAACAAGATACAAAATTAGTAAGAGAGAAAGAGAGAGAAAGCATGTGTAGCAGTTAGAAGCCCCCGGGAGGGGGTCCCATTTGTTATTGTTTTTTTTATCTATTATTGCTATTATCTCTTTCGCCAGCCACCGTGCGTTTGTCTCTTTTTCCTATAAGAAAAGGTTTATTTTAATACTTATGTTGTTGTTTTTTGGGTTCTTTTAAATCTGTTCGCCAAATTACACGTAACTGTAGATGTTTGTGTGTGCGTGTGTGCTTGTGTGTACCGGTTGTGTCGTGCGTTCGTGTGCATAGTGTATGTGCATCATATTTCCGATTATAGCTTTTCCCTTTTCGTTTCCAGTTTTCCCATTTGTTTTTGAATGTTTATACACACCATCCTCAAACCCCTCCGTCAGCCCCACTTGACAAACAATTGCGTGTGTATTGAAACTAATGACACTGTGTGCGTGTGTATGTGTGTGTGTGTGTGTGTG]




>consensus_2564#0
CCCGAGGTNTAAAAAAAAAGAAAAAATTGAAAGCGACAAAAAACAAACTCCCCACGCGTA
GGCTTCAACACGAATTGATGGAACAAGATACAAAATTAGTAAGAGAGAAAGAGAGAGAAA
GCATGTGTAGCAGTTAGAAGCCCCCGGGAGGGGGTCCCATTTGTTATTGTTTTTTTTATC
TATTATTGCTATTATCTCTTTCGCCAGCCACCGTGCGTTTGTCTCTTTTTCCTATAAGAA
AAGGTTTATTTTAATACTTATGTTGTTGTTTTTTGGGTTCTTTTAAATCTGTTCGCCAAA
TTACACGTAACTGTAGATGTTTGTGTGTGCGTGTGTGCTTGTGTGTACCGGTTGTGTCGT
GCGTTCGTGTGCATAGTGTATGTGCATCATATTTCCGATTATAGCTTTTCCCTTTTCGTT
TCCAGTTTTCCCATTTGTTTTTGAATGTTTATACACACCATCCTCAAACCCCTCCGTCAG
CCCCACTTGACAAACAATTGCGTGTGTATTGAAACTAATGACACTGTGTGCGTGTGTATG
TGTGTGTGTGTGTGTGTG

consensusID : consensus_2564#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence

                              [AGCAGAATTCGGCACGTATGGATTGAAAGCTGACAAAAAACAAACTCCCCACGCGTAGGCTTCAACACGAATTTGATGGAACAAGATACAAAATTAGTAAGAGAGAAAGAGAGAGAAAGCATTGTGTAGCAGTTAGAAGCCCCCGGGAGGGGGTCCCATTTGTTATTGTNTTNTTTTATCTATTATTGCTATTATCTCTTTCGCCAGCCACCGTGCGTTTGTCTCTTTTTCCTATAAGAAAAGGTTTATTTTAATACTTATGTTGTTGTTTATTTAGGGTTCTTTTAAATCTGTTCGCCAAATTACACGTAACTGTAGATGTTTGTGTGTGCGTGTGTGCTTGTGTGTACCGGTTTGTGTCGTGCGTTCGTGTGCATAGTGTATGTGCATCATATTTCCGATTATAGC]

[+] EMBL BX468484             [AGCAGAATTCGGCACGTATGGATTGAAAGCTGACAAAAAACAAACTCCCCACGCGTAGGCTTCAACACGAATTTGATGGAACAAGATACAAAATTAGTAAGAGAGAAAGAGAGAGAAAGCATTGTGTAGCAGTTAGAAGCCCCCGGGAGGGGGTCCCATTTGTTATTGTNTTNTTTTATCTATTATTGCTATTATCTCTTTCGCCAGCCACCGTGCGTTTGTCTCTTTTTCCTATAAGAAAAGGTTTATTTTAATACTTATGTTGTTGTTTATTTAGGGTTCTTTTAAATCTGTTCGCCAAATTACACGTAACTGTAGATGTTTGTGTGTGCGTGTGTGCTTGTGTGTACCGGTTTGTGTCGTGCGTTCGTGTGCATAGTGTATGTGCATCATATTTCCGATTATAGC]




>consensus_2564#1
AGCAGAATTCGGCACGTATGGATTGAAAGCTGACAAAAAACAAACTCCCCACGCGTAGGC
TTCAACACGAATTTGATGGAACAAGATACAAAATTAGTAAGAGAGAAAGAGAGAGAAAGC
ATTGTGTAGCAGTTAGAAGCCCCCGGGAGGGGGTCCCATTTGTTATTGTNTTNTTTTATC
TATTATTGCTATTATCTCTTTCGCCAGCCACCGTGCGTTTGTCTCTTTTTCCTATAAGAA
AAGGTTTATTTTAATACTTATGTTGTTGTTTATTTAGGGTTCTTTTAAATCTGTTCGCCA
AATTACACGTAACTGTAGATGTTTGTGTGTGCGTGTGTGCTTGTGTGTACCGGTTTGTGT
CGTGCGTTCGTGTGCATAGTGTATGTGCATCATATTTCCGATTATAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2564#0      CCCGAGGTNTAAAAAAAAAGAAAAAATTGAAAGC-GACAAAAAACAAACTCCCCACGCGT 59
consensus_2564#1      ----AGCAGAATTCGGCACGTATGGATTGAAAGCTGACAAAAAACAAACTCCCCACGCGT 56
                          **    *      * * *   ********* *************************

consensus_2564#0      AGGCTTCAACACGAATT-GATGGAACAAGATACAAAATTAGTAAGAGAGAAAGAGAGAGA 118
consensus_2564#1      AGGCTTCAACACGAATTTGATGGAACAAGATACAAAATTAGTAAGAGAGAAAGAGAGAGA 116
                      ***************** ******************************************

consensus_2564#0      AAGCAT-GTGTAGCAGTTAGAAGCCCCCGGGAGGGGGTCCCATTTGTTATTGTTTTTTTT 177
consensus_2564#1      AAGCATTGTGTAGCAGTTAGAAGCCCCCGGGAGGGGGTCCCATTTGTTATTGTNTTNTTT 176
                      ****** ********************************************** ** ***

consensus_2564#0      -ATCTATTATTGCTATTATCTCTTTCGCCAGCCACCGTGCGTTTGTCTCTTTTTCCTATA 236
consensus_2564#1      TATCTATTATTGCTATTATCTCTTTCGCCAGCCACCGTGCGTTTGTCTCTTTTTCCTATA 236
                       ***********************************************************

consensus_2564#0      AGAAAAGGTTTATTTTAATACTTATGTTGTTGTTTTTT--GGGTTCTTTTAAATCTGTTC 294
consensus_2564#1      AGAAAAGGTTTATTTTAATACTTATGTTGTTGTTTATTTAGGGTTCTTTTAAATCTGTTC 296
                      *********************************** **  ********************

consensus_2564#0      GCCAAATTACACGTAACTGTAGATGTTTGTGTGTGCGTGTGTGCTTGTGTGTACCGGTT- 353
consensus_2564#1      GCCAAATTACACGTAACTGTAGATGTTTGTGTGTGCGTGTGTGCTTGTGTGTACCGGTTT 356
                      *********************************************************** 

consensus_2564#0      GTGTCGTGCGTTCGTGTGCATAGTGTATGTGCATCATATTTCCGATTATAGCTTTTCCCT 413
consensus_2564#1      GTGTCGTGCGTTCGTGTGCATAGTGTATGTGCATCATATTTCCGATTATAGC-------- 408
                      ****************************************************        

consensus_2564#0      TTTCGTTTCCAGTTTTCCCATTTGTTTTTGAATGTTTATACACACCATCCTCAAACCCCT 473
consensus_2564#1      ------------------------------------------------------------
                                                                                  

consensus_2564#0      CCGTCAGCCCCACTTGACAAACAATTGCGTGTGTATTGAAACTAATGACACTGTGTGCGT 533
consensus_2564#1      ------------------------------------------------------------
                                                                                  

consensus_2564#0      GTGTATGTGTGTGTGTGTGTGTGTG 558
consensus_2564#1      -------------------------