cluster # 2565

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Anopheles gambiae
cluster # 2565 cluster # 2565 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2565#0 length = 896 sequences # 1

consensus_2565#1 length = 582 sequences # 1

consensusID : consensus_2565#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 896
fasta sequence

                              [GGCAGATCCCCCGAGGTTTAAAGCGTGTCGAACAAATTGTCGTATNGTACAAACGGAACTTCTGTAAAATTCATTTAAAATGAAGCTCTTCCCAGTGTTTCTAATCCCTTGNGGGCAATTTGGGATCCACACTTGGGCGCCCGGGGACTCTCCTGTTAAGGNAAGCTGATNTGGTCTACAGACAANANNTCNGTGCGAAACACGACCCCGCTCATNAGTCCCACACACACCGATATGTGTGTGAGAAAATATCTGGCTCCCGTGGTGTGATGTGTGTGTAATGCGTGATGTGTGAAGCTACAGTGGNCCATNTGTAACATTCTCACACATTCTGTGTACACCGACGTGGAGCAAAGCAGAATACTTATATATACTGGTGCTACTCTAGGGGTGAGCTACTTTACCACTATCCTATATNGTGCGCGCACTCTCTACAAATCCTCCTGTGTGAAGCATTCCAAATACACATGCGTTGATGAGCATGATCCAATTTAGAATNTGTNTACCGCTTACCGCATGANAGGGCGTTTTATATGCAGTTCGCGACATACCCAGAAATTGCGTTCAATTAGACGAGAAAGCAGTCCACTCAGCAGCAGGGCAAGCGTAAAACTGACGAGAGCGTACAATAAATCGATTAACAGGAAAGTTCCTGGTCAATTCCGNCTTACGTGGTGACTACTATAAACCANAACGTAGACANCANACACACACACACCACAACAACACNACACACCACAGTAGACACAAAACAANACACNAGNCCATGTTTGTGNCGCNGCACNAGGTTATTACCCATTANNGGAGGGGGTGAAACAAAAGCATGGGCAGCTTGGNNNGCGGTATGTANAAAGGGCTCGNGTGATGNGTAAAACCCTGTGGNTATCCACCCACAT]

[+] EMBL AL931599             [GGCAGATCCCCCGAGGTTTAAAGCGTGTCGAACAAATTGTCGTATNGTACAAACGGAACTTCTGTAAAATTCATTTAAAATGAAGCTCTTCCCAGTGTTTCTAATCCCTTGNGGGCAATTTGGGATCCACACTTGGGCGCCCGGGGACTCTCCTGTTAAGGNAAGCTGATNTGGTCTACAGACAANANNTCNGTGCGAAACACGACCCCGCTCATNAGTCCCACACACACCGATATGTGTGTGAGAAAATATCTGGCTCCCGTGGTGTGATGTGTGTGTAATGCGTGATGTGTGAAGCTACAGTGGNCCATNTGTAACATTCTCACACATTCTGTGTACACCGACGTGGAGCAAAGCAGAATACTTATATATACTGGTGCTACTCTAGGGGTGAGCTACTTTACCACTATCCTATATNGTGCGCGCACTCTCTACAAATCCTCCTGTGTGAAGCATTCCAAATACACATGCGTTGATGAGCATGATCCAATTTAGAATNTGTNTACCGCTTACCGCATGANAGGGCGTTTTATATGCAGTTCGCGACATACCCAGAAATTGCGTTCAATTAGACGAGAAAGCAGTCCACTCAGCAGCAGGGCAAGCGTAAAACTGACGAGAGCGTACAATAAATCGATTAACAGGAAAGTTCCTGGTCAATTCCGNCTTACGTGGTGACTACTATAAACCANAACGTAGACANCANACACACACACACCACAACAACACNACACACCACAGTAGACACAAAACAANACACNAGNCCATGTTTGTGNCGCNGCACNAGGTTATTACCCATTANNGGAGGGGGTGAAACAAAAGCATGGGCAGCTTGGNNNGCGGTATGTANAAAGGGCTCGNGTGATGNGTAAAACCCTGTGGNTATCCACCCACAT]




>consensus_2565#0
GGCAGATCCCCCGAGGTTTAAAGCGTGTCGAACAAATTGTCGTATNGTACAAACGGAACT
TCTGTAAAATTCATTTAAAATGAAGCTCTTCCCAGTGTTTCTAATCCCTTGNGGGCAATT
TGGGATCCACACTTGGGCGCCCGGGGACTCTCCTGTTAAGGNAAGCTGATNTGGTCTACA
GACAANANNTCNGTGCGAAACACGACCCCGCTCATNAGTCCCACACACACCGATATGTGT
GTGAGAAAATATCTGGCTCCCGTGGTGTGATGTGTGTGTAATGCGTGATGTGTGAAGCTA
CAGTGGNCCATNTGTAACATTCTCACACATTCTGTGTACACCGACGTGGAGCAAAGCAGA
ATACTTATATATACTGGTGCTACTCTAGGGGTGAGCTACTTTACCACTATCCTATATNGT
GCGCGCACTCTCTACAAATCCTCCTGTGTGAAGCATTCCAAATACACATGCGTTGATGAG
CATGATCCAATTTAGAATNTGTNTACCGCTTACCGCATGANAGGGCGTTTTATATGCAGT
TCGCGACATACCCAGAAATTGCGTTCAATTAGACGAGAAAGCAGTCCACTCAGCAGCAGG
GCAAGCGTAAAACTGACGAGAGCGTACAATAAATCGATTAACAGGAAAGTTCCTGGTCAA
TTCCGNCTTACGTGGTGACTACTATAAACCANAACGTAGACANCANACACACACACACCA
CAACAACACNACACACCACAGTAGACACAAAACAANACACNAGNCCATGTTTGTGNCGCN
GCACNAGGTTATTACCCATTANNGGAGGGGGTGAAACAAAAGCATGGGCAGCTTGGNNNG
CGGTATGTANAAAGGGCTCGNGTGATGNGTAAAACCCTGTGGNTATCCACCCACAT

consensusID : consensus_2565#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [GAACCAAATTGTCGTATCGTACAACCGCAACTTCTGTAAAATTCATTTAAAAATGAAGCTCTTCCAAGTGTTTCTAATCCTTTGCGGTTTAATTGCATCCACACTGGCCGTCCCGGGACCTCTCCTGTTAAAGAAAGTGATTGTCAAACAGCCAATATTCGTGAAACCCGCCCCCGTCATCGTCCATCGACCGATTGTGGTGAGAAAATTCGCCTCCCGTGGTGGATGGTGGTAATGCGGATGGGAAGCTACAGGGCCCATTGAACTTCTCACACTTCGGTACACCGATGGAGCAAACAAATCTTATTATCGGTCTCCTGGCTGACTTTTACCATTCCTATTGCCGCCACTCTCACAAATCCTCCTGGTGAAGCATTCCAAATCACTGCATTGATGACATGATCCAATTAGAATTGTTACCGTTACCGAATGAAGGGCGTTTTATATGCATTCGCACATACCCAGAAATTGCTTCAATTAGACGAAAAGCAGTCCACTCAGCAGCAGGGCAAGCGTAAAACTGACGAGAGCGTACAATAAATCGATTAACAGGAAAGTTCCTGGCAATCCGTTACGGTTACT]

[+] EMBL BX626347             [GAACCAAATTGTCGTATCGTACAACCGCAACTTCTGTAAAATTCATTTAAAAATGAAGCTCTTCCAAGTGTTTCTAATCCTTTGCGGTTTAATTGCATCCACACTGGCCGTCCCGGGACCTCTCCTGTTAAAGAAAGTGATTGTCAAACAGCCAATATTCGTGAAACCCGCCCCCGTCATCGTCCATCGACCGATTGTGGTGAGAAAATTCGCCTCCCGTGGTGGATGGTGGTAATGCGGATGGGAAGCTACAGGGCCCATTGAACTTCTCACACTTCGGTACACCGATGGAGCAAACAAATCTTATTATCGGTCTCCTGGCTGACTTTTACCATTCCTATTGCCGCCACTCTCACAAATCCTCCTGGTGAAGCATTCCAAATCACTGCATTGATGACATGATCCAATTAGAATTGTTACCGTTACCGAATGAAGGGCGTTTTATATGCATTCGCACATACCCAGAAATTGCTTCAATTAGACGAAAAGCAGTCCACTCAGCAGCAGGGCAAGCGTAAAACTGACGAGAGCGTACAATAAATCGATTAACAGGAAAGTTCCTGGCAATCCGTTACGGTTACT]




>consensus_2565#1
GAACCAAATTGTCGTATCGTACAACCGCAACTTCTGTAAAATTCATTTAAAAATGAAGCT
CTTCCAAGTGTTTCTAATCCTTTGCGGTTTAATTGCATCCACACTGGCCGTCCCGGGACC
TCTCCTGTTAAAGAAAGTGATTGTCAAACAGCCAATATTCGTGAAACCCGCCCCCGTCAT
CGTCCATCGACCGATTGTGGTGAGAAAATTCGCCTCCCGTGGTGGATGGTGGTAATGCGG
ATGGGAAGCTACAGGGCCCATTGAACTTCTCACACTTCGGTACACCGATGGAGCAAACAA
ATCTTATTATCGGTCTCCTGGCTGACTTTTACCATTCCTATTGCCGCCACTCTCACAAAT
CCTCCTGGTGAAGCATTCCAAATCACTGCATTGATGACATGATCCAATTAGAATTGTTAC
CGTTACCGAATGAAGGGCGTTTTATATGCATTCGCACATACCCAGAAATTGCTTCAATTA
GACGAAAAGCAGTCCACTCAGCAGCAGGGCAAGCGTAAAACTGACGAGAGCGTACAATAA
ATCGATTAACAGGAAAGTTCCTGGCAATCCGTTACGGTTACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2565#0      GGCAGATCCCCCGAGGTTTAAAGCGTGTCGAACAAATTGTCGTATNGTACAAACGGAACT 60
consensus_2565#1      ----------------------------GAACCAAATTGTCGTATCGTACAACCGCAACT 32
                                                    * ************* ****** ** ****

consensus_2565#0      TCTGTAAAATTCATTTAAAA-TGAAGCTCTTCCCAGTGTTTCTAATCCCTTGNGGGCAAT 119
consensus_2565#1      TCTGTAAAATTCATTTAAAAATGAAGCTCTTCCAAGTGTTTCTAATCCTTTGCGGTTTAA 92
                      ******************** ************ ************** *** **   * 

consensus_2565#0      TTGGGATCCACACTTGGGCGCCCGGGGACTCTCCTGTTAAGGNAAGCTGATNTGGTCTAC 179
consensus_2565#1      TTGC-ATCCACACTGGCCGTCCCGGGACCTCTCCTGTTAAAGAAAGTGATTGT------C 145
                      ***  ********* *    ******  ************ * ***    * *      *

consensus_2565#0      AGACAANANNTCNGTGCGAAACACGACCCCGCTCATNAGTCCCACACACACCGATATGTG 239
consensus_2565#1      AAACAGCCAATATTCGTGAAACCCGCCCCCG-TCATC-GTCC---ATCGACCGAT-TGTG 199
                      * ***     *    * ***** ** ***** ****  ****   *   ****** ****

consensus_2565#0      TGTGAGAAAATATCTGGCTCCCGTGGTGTGATGTGTGTGTAATGCGTGATGTGTGAAGCT 299
consensus_2565#1      -GTGAGAAAAT--TCGCCTCCCGTGGTG-GATG-GTG-GTAATGCGGA---TGGGAAGCT 250
                       **********    * *********** **** *** ********     ** ******

consensus_2565#0      ACAGTGGNCCATNTGTAACATTCTCACACATTCTGTGTACACCGACGTGGAGCAAAGCAG 359
consensus_2565#1      ACAG-GGCCCATT---GAACTTCTCACACTTCG---GTACACCGA--TGGAGCAA---AC 298
                      **** ** ****     *  ********* *     *********  ********   * 

consensus_2565#0      AATACTTATATATACTGGTGCTACTCTAGGGGTGAGCTACTTTACCACTATCCTATATNG 419
consensus_2565#1      AAATCTTAT---TATCGGT-CTCCT-----GGCTGACT--TTTACCAT--TCCTAT---- 341
                      **  *****   **  *** ** **     **    **  *******   ******    

consensus_2565#0      TGCGCGCACTCTCTACAAATCCTCCTGTGTGAAGCATTCCAAATACACATGCGTTGATGA 479
consensus_2565#1      TGCCGCCACTCTC-ACAAATCCTCCTG-GTGAAGCATTCCAAAT-CAC-TGCATTGATGA 397
                      ***   ******* ************* **************** *** *** *******

consensus_2565#0      GCATGATCCAATTTAGAATNTGTNTACCGCTTACCGCATGANAGGGCGTTTTATATGCAG 539
consensus_2565#1      -CATGATCCAATT-AGAATTG--TTACCG-TTACCGAATGAA-GGGCGTTTTATATGCA- 450
                       ************ *****     ***** ****** ****  **************** 

consensus_2565#0      TTCGCGACATACCCAGAAATTGCGTTCAATTAGACGAGAAAGCAGTCCACTCAGCAGCAG 599
consensus_2565#1      TTCGC-ACATACCCAGAAATTGC-TTCAATTAGACGA-AAAGCAGTCCACTCAGCAGCAG 507
                      ***** ***************** ************* **********************

consensus_2565#0      GGCAAGCGTAAAACTGACGAGAGCGTACAATAAATCGATTAACAGGAAAGTTCCTGGTCA 659
consensus_2565#1      GGCAAGCGTAAAACTGACGAGAGCGTACAATAAATCGATTAACAGGAAAGTTCCTGGCAA 567
                      *********************************************************  *

consensus_2565#0      ATTCCGNCTTACGTGGTGACTACTATAAACCANAACGTAGACANCANACACACACACACC 719
consensus_2565#1      --TCCGTT----ACGGTTACT--------------------------------------- 582
                        ****        *** ***                                       

consensus_2565#0      ACAACAACACNACACACCACAGTAGACACAAAACAANACACNAGNCCATGTTTGTGNCGC 779
consensus_2565#1      ------------------------------------------------------------
                                                                                  

consensus_2565#0      NGCACNAGGTTATTACCCATTANNGGAGGGGGTGAAACAAAAGCATGGGCAGCTTGGNNN 839
consensus_2565#1      ------------------------------------------------------------
                                                                                  

consensus_2565#0      GCGGTATGTANAAAGGGCTCGNGTGATGNGTAAAACCCTGTGGNTATCCACCCACAT 896
consensus_2565#1      ---------------------------------------------------------