cluster # 2591

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Anopheles gambiae
cluster # 2591 cluster # 2591 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2591#0 length = 740 sequences # 1

consensus_2591#1 length = 99 sequences # 1

consensusID : consensus_2591#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 740
fasta sequence

                              [TGAAAAATATTGCACCTTAGTGCTAATTTTATATTCAGAAGGAACGACTTCTGCCGTATTGCTTAGTGACAAATTTGTGTAGTAAAACAACCCAATTTGAATAGACGGTACACAAATAAGAGTACACAAATAAAACATAAGAATAACTTGTTTATGCCTCATTCATACTCAATGATAAAAAAGCTGCATTTTACAATCAATTTTGATGGTAGCTTTATAACATGCAAGTAGTTTCAGTAGGTTCGGTTGGCATTATCAAACGGAGTTGGAACGACATCAAACGGTACAGCAGGCAATGGATTTGTTTTGATTTTGCGCGAGATGAGTATCGTTTATTCCCCAAATACTGCGATTCTTTTACTTCTTGGTTTTGTGGCCACTTCTTCGAATATCATATAACACGGTTGGTGGGACGTCACATCATCCGATATTGTTATGCGTACGCGTTCTTGCATGACATGAAGTTCGTATTGATTTATTTTTTTATCCATTCAAAGGAAAGCCTAGTTTGTGATACAACAGGGACACAAGACGACGCGATCAAAAGTTTTGTTGTAGAATGTTATTTCAAAAATGTGCTTTATGAGATAAGTTCTATTTGATAATGTTATGATTAGAAAGGGAAATATTCGAATCTTAAAATAATATATGAGAAAATAATAACAAATCTTCAAAGCTTGTATTTATTGTTGTTAAAAATATAGTTTTACTTTATATTATTTAACATTGAATGCACATGA]

[+] EMBL BX608549             [TGAAAAATATTGCACCTTAGTGCTAATTTTATATTCAGAAGGAACGACTTCTGCCGTATTGCTTAGTGACAAATTTGTGTAGTAAAACAACCCAATTTGAATAGACGGTACACAAATAAGAGTACACAAATAAAACATAAGAATAACTTGTTTATGCCTCATTCATACTCAATGATAAAAAAGCTGCATTTTACAATCAATTTTGATGGTAGCTTTATAACATGCAAGTAGTTTCAGTAGGTTCGGTTGGCATTATCAAACGGAGTTGGAACGACATCAAACGGTACAGCAGGCAATGGATTTGTTTTGATTTTGCGCGAGATGAGTATCGTTTATTCCCCAAATACTGCGATTCTTTTACTTCTTGGTTTTGTGGCCACTTCTTCGAATATCATATAACACGGTTGGTGGGACGTCACATCATCCGATATTGTTATGCGTACGCGTTCTTGCATGACATGAAGTTCGTATTGATTTATTTTTTTATCCATTCAAAGGAAAGCCTAGTTTGTGATACAACAGGGACACAAGACGACGCGATCAAAAGTTTTGTTGTAGAATGTTATTTCAAAAATGTGCTTTATGAGATAAGTTCTATTTGATAATGTTATGATTAGAAAGGGAAATATTCGAATCTTAAAATAATATATGAGAAAATAATAACAAATCTTCAAAGCTTGTATTTATTGTTGTTAAAAATATAGTTTTACTTTATATTATTTAACATTGAATGCACATGA]




>consensus_2591#0
TGAAAAATATTGCACCTTAGTGCTAATTTTATATTCAGAAGGAACGACTTCTGCCGTATT
GCTTAGTGACAAATTTGTGTAGTAAAACAACCCAATTTGAATAGACGGTACACAAATAAG
AGTACACAAATAAAACATAAGAATAACTTGTTTATGCCTCATTCATACTCAATGATAAAA
AAGCTGCATTTTACAATCAATTTTGATGGTAGCTTTATAACATGCAAGTAGTTTCAGTAG
GTTCGGTTGGCATTATCAAACGGAGTTGGAACGACATCAAACGGTACAGCAGGCAATGGA
TTTGTTTTGATTTTGCGCGAGATGAGTATCGTTTATTCCCCAAATACTGCGATTCTTTTA
CTTCTTGGTTTTGTGGCCACTTCTTCGAATATCATATAACACGGTTGGTGGGACGTCACA
TCATCCGATATTGTTATGCGTACGCGTTCTTGCATGACATGAAGTTCGTATTGATTTATT
TTTTTATCCATTCAAAGGAAAGCCTAGTTTGTGATACAACAGGGACACAAGACGACGCGA
TCAAAAGTTTTGTTGTAGAATGTTATTTCAAAAATGTGCTTTATGAGATAAGTTCTATTT
GATAATGTTATGATTAGAAAGGGAAATATTCGAATCTTAAAATAATATATGAGAAAATAA
TAACAAATCTTCAAAGCTTGTATTTATTGTTGTTAAAAATATAGTTTTACTTTATATTAT
TTAACATTGAATGCACATGA

consensusID : consensus_2591#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 99
fasta sequence

                              [CCGCCCACGCGTCCGGTAGAATGTTATTTCAAAAATGTGCTTTATGAGATAAGTTCTATTTGATAATGTTATGATTAGAAAGGGTATGATTCGAATCTT]

[+] EMBL BM637358             [CCGCCCACGCGTCCGGTAGAATGTTATTTCAAAAATGTGCTTTATGAGATAAGTTCTATTTGATAATGTTATGATTAGAAAGGGTATGATTCGAATCTT]




>consensus_2591#1
CCGCCCACGCGTCCGGTAGAATGTTATTTCAAAAATGTGCTTTATGAGATAAGTTCTATT
TGATAATGTTATGATTAGAAAGGGTATGATTCGAATCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2591#0      TGAAAAATATTGCACCTTAGTGCTAATTTTATATTCAGAAGGAACGACTTCTGCCGTATT 60
consensus_2591#1      ------------------------------------------------------------
                                                                                  

consensus_2591#0      GCTTAGTGACAAATTTGTGTAGTAAAACAACCCAATTTGAATAGACGGTACACAAATAAG 120
consensus_2591#1      ------------------------------------------------------------
                                                                                  

consensus_2591#0      AGTACACAAATAAAACATAAGAATAACTTGTTTATGCCTCATTCATACTCAATGATAAAA 180
consensus_2591#1      ------------------------------------------------------------
                                                                                  

consensus_2591#0      AAGCTGCATTTTACAATCAATTTTGATGGTAGCTTTATAACATGCAAGTAGTTTCAGTAG 240
consensus_2591#1      ------------------------------------------------------------
                                                                                  

consensus_2591#0      GTTCGGTTGGCATTATCAAACGGAGTTGGAACGACATCAAACGGTACAGCAGGCAATGGA 300
consensus_2591#1      ------------------------------------------------------------
                                                                                  

consensus_2591#0      TTTGTTTTGATTTTGCGCGAGATGAGTATCGTTTATTCCCCAAATACTGCGATTCTTTTA 360
consensus_2591#1      ------------------------------------------------------------
                                                                                  

consensus_2591#0      CTTCTTGGTTTTGTGGCCACTTCTTCGAATATCATATAACACGGTTGGTGGGACGTCACA 420
consensus_2591#1      ------------------------------------------------------------
                                                                                  

consensus_2591#0      TCATCCGATATTGTTATGCGTACGCGTTCTTGCATGACATGAAGTTCGTATTGATTTATT 480
consensus_2591#1      ------------------------------------------------------------
                                                                                  

consensus_2591#0      TTTTTATCCATTCAAAGGAAAGCCTAGTTTGTGATACAACAGGGACACAAGACGACGCGA 540
consensus_2591#1      --------------------------------------------------------CCGC 4
                                                                               ** 

consensus_2591#0      TCAAAAGTTTTGTTGTAGAATGTTATTTCAAAAATGTGCTTTATGAGATAAGTTCTATTT 600
consensus_2591#1      CCACGCGTCCGG---TAGAATGTTATTTCAAAAATGTGCTTTATGAGATAAGTTCTATTT 61
                       **   **   *   *********************************************

consensus_2591#0      GATAATGTTATGATTAGAAAGGGAAATATTCGAATCTTAAAATAATATATGAGAAAATAA 660
consensus_2591#1      GATAATGTTATGATTAGAAAGGGTATGATTCGAATCTT---------------------- 99
                      *********************** *  ***********                      

consensus_2591#0      TAACAAATCTTCAAAGCTTGTATTTATTGTTGTTAAAAATATAGTTTTACTTTATATTAT 720
consensus_2591#1      ------------------------------------------------------------
                                                                                  

consensus_2591#0      TTAACATTGAATGCACATGA 740
consensus_2591#1      --------------------