cluster # 2606

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Anopheles gambiae
cluster # 2606 cluster # 2606 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2606#0 length = 621 sequences # 1

consensus_2606#1 length = 575 sequences # 1

consensusID : consensus_2606#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [CCGGTTTGAAGAGAACGCAAAAACCACGCTGCCGCTGCCGTTGTTGACGGGAAGGTGTTATTCTTTTTTGCTGTCTTCGTCTGGTGTGATCTTGCGAAGCAGCGAGAAGAAAACAATAACAAGCCCGATTATTGTACCCGCCGCGTGTCGTGCGTCTTCCGCCTGCTTCCGTTCCGTGCGCGTGTTATTTCCTATTGCGAACTGTTGCATCGTTGGAAGAGTGGGTTGTTGTTGTTGTTGTTGACATCTATGCGCCGTAATCTGTGTTTACACCTTTCCGTTTTGTTTGGCCCCTCCGTCTCGTTCTCGAGTAGCACGTAGTTCGCTGAGGGCTGTTTTGCCGTGTGGCCCCTTTGTGTTGGTGTCGTCGTGGAAATCCTCTCCACTGGGAGGCGGAGGAAAAGCGGAGTAAAAAGTAACGGGTGAATCATAGGGCAAACCAGTGTGTACCGTTACTGCCACGCTGCGGCCGAGAATCGTCAGCCCTTTCGTGCAGGGCCGCTCTCTAGGCGGTGAAGCTAAACTTCACGATCTTAGCAACCGGTACTCCGCGTACTAGCCTGTATGTGTGTGTGTCTGTGTGTGTGTGTGGTGCAATAAAATACTAAAATTGACAAGTGC]

[+] EMBL BM637488             [CCGGTTTGAAGAGAACGCAAAAACCACGCTGCCGCTGCCGTTGTTGACGGGAAGGTGTTATTCTTTTTTGCTGTCTTCGTCTGGTGTGATCTTGCGAAGCAGCGAGAAGAAAACAATAACAAGCCCGATTATTGTACCCGCCGCGTGTCGTGCGTCTTCCGCCTGCTTCCGTTCCGTGCGCGTGTTATTTCCTATTGCGAACTGTTGCATCGTTGGAAGAGTGGGTTGTTGTTGTTGTTGTTGACATCTATGCGCCGTAATCTGTGTTTACACCTTTCCGTTTTGTTTGGCCCCTCCGTCTCGTTCTCGAGTAGCACGTAGTTCGCTGAGGGCTGTTTTGCCGTGTGGCCCCTTTGTGTTGGTGTCGTCGTGGAAATCCTCTCCACTGGGAGGCGGAGGAAAAGCGGAGTAAAAAGTAACGGGTGAATCATAGGGCAAACCAGTGTGTACCGTTACTGCCACGCTGCGGCCGAGAATCGTCAGCCCTTTCGTGCAGGGCCGCTCTCTAGGCGGTGAAGCTAAACTTCACGATCTTAGCAACCGGTACTCCGCGTACTAGCCTGTATGTGTGTGTGTCTGTGTGTGTGTGTGGTGCAATAAAATACTAAAATTGACAAGTGC]




>consensus_2606#0
CCGGTTTGAAGAGAACGCAAAAACCACGCTGCCGCTGCCGTTGTTGACGGGAAGGTGTTA
TTCTTTTTTGCTGTCTTCGTCTGGTGTGATCTTGCGAAGCAGCGAGAAGAAAACAATAAC
AAGCCCGATTATTGTACCCGCCGCGTGTCGTGCGTCTTCCGCCTGCTTCCGTTCCGTGCG
CGTGTTATTTCCTATTGCGAACTGTTGCATCGTTGGAAGAGTGGGTTGTTGTTGTTGTTG
TTGACATCTATGCGCCGTAATCTGTGTTTACACCTTTCCGTTTTGTTTGGCCCCTCCGTC
TCGTTCTCGAGTAGCACGTAGTTCGCTGAGGGCTGTTTTGCCGTGTGGCCCCTTTGTGTT
GGTGTCGTCGTGGAAATCCTCTCCACTGGGAGGCGGAGGAAAAGCGGAGTAAAAAGTAAC
GGGTGAATCATAGGGCAAACCAGTGTGTACCGTTACTGCCACGCTGCGGCCGAGAATCGT
CAGCCCTTTCGTGCAGGGCCGCTCTCTAGGCGGTGAAGCTAAACTTCACGATCTTAGCAA
CCGGTACTCCGCGTACTAGCCTGTATGTGTGTGTGTCTGTGTGTGTGTGTGGTGCAATAA
AATACTAAAATTGACAAGTGC

consensusID : consensus_2606#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [GGACGCGTGGGCGCAAAAACCACGCTGCCGCTGCCGCTGCCGTTGTTGACGGGAAGGTGTTATTCTTTTTTGCTGTCTTCGTCTGGTGTGATCTTGCGAAGCAGCGAGAAGAAAACAATAACAAGCCCGATTATTGTACCCTCCGCGTGTCGTGCGCCTTCCGCCTGCTTCCGTTCCGTGCGCGTGTTATTTCCTATTGCGAACTGTTGCATCGTTGGAAGAGTTTGTTGTTGTTGTTGTTGACATCTATGCGCCGTAATCTGTGTTTACACCTTTCCGTTTTGTTTGCCCCTCCGTCTCGTTCTCGAGTAGCACGTAGTTCGCTGAGGGCTGTTTTGCCGTGTGGCCCCTTTGTGTTGGTGTCGTCGTGGAAATCCTCTCCACTGGGAGGCGGAGGAAAAGCGGAGTAAAAAGTAACGGGTGAATCATAGGGCAAACCAGTGTGCACCGTTACTGCCTCGCTGCGGCCGAGAATCGTCAGCCCTTTCGTGCAGGGCCGCTCTCTAGGCGGTGAAGCTAAACTTCACGATCTTAGCAACCCGTACTCCGCGTACTTTCCTGTATGTGTGTGTGTC]

[+] EMBL BM639763             [GGACGCGTGGGCGCAAAAACCACGCTGCCGCTGCCGCTGCCGTTGTTGACGGGAAGGTGTTATTCTTTTTTGCTGTCTTCGTCTGGTGTGATCTTGCGAAGCAGCGAGAAGAAAACAATAACAAGCCCGATTATTGTACCCTCCGCGTGTCGTGCGCCTTCCGCCTGCTTCCGTTCCGTGCGCGTGTTATTTCCTATTGCGAACTGTTGCATCGTTGGAAGAGTTTGTTGTTGTTGTTGTTGACATCTATGCGCCGTAATCTGTGTTTACACCTTTCCGTTTTGTTTGCCCCTCCGTCTCGTTCTCGAGTAGCACGTAGTTCGCTGAGGGCTGTTTTGCCGTGTGGCCCCTTTGTGTTGGTGTCGTCGTGGAAATCCTCTCCACTGGGAGGCGGAGGAAAAGCGGAGTAAAAAGTAACGGGTGAATCATAGGGCAAACCAGTGTGCACCGTTACTGCCTCGCTGCGGCCGAGAATCGTCAGCCCTTTCGTGCAGGGCCGCTCTCTAGGCGGTGAAGCTAAACTTCACGATCTTAGCAACCCGTACTCCGCGTACTTTCCTGTATGTGTGTGTGTC]




>consensus_2606#1
GGACGCGTGGGCGCAAAAACCACGCTGCCGCTGCCGCTGCCGTTGTTGACGGGAAGGTGT
TATTCTTTTTTGCTGTCTTCGTCTGGTGTGATCTTGCGAAGCAGCGAGAAGAAAACAATA
ACAAGCCCGATTATTGTACCCTCCGCGTGTCGTGCGCCTTCCGCCTGCTTCCGTTCCGTG
CGCGTGTTATTTCCTATTGCGAACTGTTGCATCGTTGGAAGAGTTTGTTGTTGTTGTTGT
TGACATCTATGCGCCGTAATCTGTGTTTACACCTTTCCGTTTTGTTTGCCCCTCCGTCTC
GTTCTCGAGTAGCACGTAGTTCGCTGAGGGCTGTTTTGCCGTGTGGCCCCTTTGTGTTGG
TGTCGTCGTGGAAATCCTCTCCACTGGGAGGCGGAGGAAAAGCGGAGTAAAAAGTAACGG
GTGAATCATAGGGCAAACCAGTGTGCACCGTTACTGCCTCGCTGCGGCCGAGAATCGTCA
GCCCTTTCGTGCAGGGCCGCTCTCTAGGCGGTGAAGCTAAACTTCACGATCTTAGCAACC
CGTACTCCGCGTACTTTCCTGTATGTGTGTGTGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2606#0      --CCGGTTTGAAGAGAACGCAAAAACCACGCTGCCGCTGCCGTTGTTGACGGGAAGGTGT 58
consensus_2606#1      GGACGCGTGGGCGCAAAAACCACGCTGCCGCTGCCGCTGCCGTTGTTGACGGGAAGGTGT 60
                         **  * *  *  **  * *      ********************************

consensus_2606#0      TATTCTTTTTTGCTGTCTTCGTCTGGTGTGATCTTGCGAAGCAGCGAGAAGAAAACAATA 118
consensus_2606#1      TATTCTTTTTTGCTGTCTTCGTCTGGTGTGATCTTGCGAAGCAGCGAGAAGAAAACAATA 120
                      ************************************************************

consensus_2606#0      ACAAGCCCGATTATTGTACCCGCCGCGTGTCGTGCGTCTTCCGCCTGCTTCCGTTCCGTG 178
consensus_2606#1      ACAAGCCCGATTATTGTACCCTCCGCGTGTCGTGCGCCTTCCGCCTGCTTCCGTTCCGTG 180
                      ********************* ************** ***********************

consensus_2606#0      CGCGTGTTATTTCCTATTGCGAACTGTTGCATCGTTGGAAGAGTGGGTTGTTGTTGTTGT 238
consensus_2606#1      CGCGTGTTATTTCCTATTGCGAACTGTTGCATCGTTGGAAGAGT---TTGTTGTTGTTGT 237
                      ********************************************   *************

consensus_2606#0      TGTTGACATCTATGCGCCGTAATCTGTGTTTACACCTTTCCGTTTTGTTTGGCCCCTCCG 298
consensus_2606#1      TGTTGACATCTATGCGCCGTAATCTGTGTTTACACCTTTCCGTTTTGTTTG-CCCCTCCG 296
                      *************************************************** ********

consensus_2606#0      TCTCGTTCTCGAGTAGCACGTAGTTCGCTGAGGGCTGTTTTGCCGTGTGGCCCCTTTGTG 358
consensus_2606#1      TCTCGTTCTCGAGTAGCACGTAGTTCGCTGAGGGCTGTTTTGCCGTGTGGCCCCTTTGTG 356
                      ************************************************************

consensus_2606#0      TTGGTGTCGTCGTGGAAATCCTCTCCACTGGGAGGCGGAGGAAAAGCGGAGTAAAAAGTA 418
consensus_2606#1      TTGGTGTCGTCGTGGAAATCCTCTCCACTGGGAGGCGGAGGAAAAGCGGAGTAAAAAGTA 416
                      ************************************************************

consensus_2606#0      ACGGGTGAATCATAGGGCAAACCAGTGTGTACCGTTACTGCCACGCTGCGGCCGAGAATC 478
consensus_2606#1      ACGGGTGAATCATAGGGCAAACCAGTGTGCACCGTTACTGCCTCGCTGCGGCCGAGAATC 476
                      ***************************** ************ *****************

consensus_2606#0      GTCAGCCCTTTCGTGCAGGGCCGCTCTCTAGGCGGTGAAGCTAAACTTCACGATCTTAGC 538
consensus_2606#1      GTCAGCCCTTTCGTGCAGGGCCGCTCTCTAGGCGGTGAAGCTAAACTTCACGATCTTAGC 536
                      ************************************************************

consensus_2606#0      AACCGGTACTCCGCGTACTAGCCTGTATGTGTGTGTGTCTGTGTGTGTGTGTGGTGCAAT 598
consensus_2606#1      AACCCGTACTCCGCGTACTTTCCTGTATGTGTGTGTGTC--------------------- 575
                      **** **************  ******************                     

consensus_2606#0      AAAATACTAAAATTGACAAGTGC 621
consensus_2606#1      -----------------------