cluster # 2618

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Anopheles gambiae
cluster # 2618 cluster # 2618 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2618#0 length = 685 sequences # 1

consensus_2618#1 length = 683 sequences # 1

consensusID : consensus_2618#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [GTACGGAAACCGAGGAAATTCCTTTTAAACACACACACACACCAACCCCCTATTGAGATACTTTTTATTGCAATTCTTTGTTAATTTGTTGATAGTCGATAATCGATCGCGCGCGTGATGATGGGGGGATAGTTTTTCGGGTCTGGGAAACCAACGAGAGAAAGTGTGCGTGCGTGTGCGTGTGCCCTCCGTCGGAAAAAGGGGGGTTAAGGGCATTGCCCAATAGGAGAACGGAATTCTGCTAAGCGTAACCGTTGGAAGCGATTGTGAGCGATAAAACCTGAAAGCAGAAACGGCGAAGCAGAAGAAAGCGCAGTGTGTTCCAAAAAAAAGAAAAACATTGTTACTCAAAAGCGCTGTGTGTTTAAACTGAAGCTAATTGTTGCTTCGCGCTTGTCGTGGAGTGTGGATGAACCTCAACCGATATTGAACGAGACACACACACACACACACACACACACTAAAATCCAGAGGAAAGAGACACGCAATGCATATATATCTATATTCTCTCTGTTCGTTATACCTGTATATAATCAAAGCAGATGATTAAGGTTGAGATGAGCAGCCCCAGAAGCAGCAGTTGCAGCTGCTGCTGCAAGCTCTGCCAAAACCGTCTCTGGACCATTTGCTCTAGTGGTCGAAAAAAAAAAAATAATAATGAAGTAACAAACAAAACAGCACTAGT]

[+] EMBL BX606336             [GTACGGAAACCGAGGAAATTCCTTTTAAACACACACACACACCAACCCCCTATTGAGATACTTTTTATTGCAATTCTTTGTTAATTTGTTGATAGTCGATAATCGATCGCGCGCGTGATGATGGGGGGATAGTTTTTCGGGTCTGGGAAACCAACGAGAGAAAGTGTGCGTGCGTGTGCGTGTGCCCTCCGTCGGAAAAAGGGGGGTTAAGGGCATTGCCCAATAGGAGAACGGAATTCTGCTAAGCGTAACCGTTGGAAGCGATTGTGAGCGATAAAACCTGAAAGCAGAAACGGCGAAGCAGAAGAAAGCGCAGTGTGTTCCAAAAAAAAGAAAAACATTGTTACTCAAAAGCGCTGTGTGTTTAAACTGAAGCTAATTGTTGCTTCGCGCTTGTCGTGGAGTGTGGATGAACCTCAACCGATATTGAACGAGACACACACACACACACACACACACACTAAAATCCAGAGGAAAGAGACACGCAATGCATATATATCTATATTCTCTCTGTTCGTTATACCTGTATATAATCAAAGCAGATGATTAAGGTTGAGATGAGCAGCCCCAGAAGCAGCAGTTGCAGCTGCTGCTGCAAGCTCTGCCAAAACCGTCTCTGGACCATTTGCTCTAGTGGTCGAAAAAAAAAAAATAATAATGAAGTAACAAACAAAACAGCACTAGT]




>consensus_2618#0
GTACGGAAACCGAGGAAATTCCTTTTAAACACACACACACACCAACCCCCTATTGAGATA
CTTTTTATTGCAATTCTTTGTTAATTTGTTGATAGTCGATAATCGATCGCGCGCGTGATG
ATGGGGGGATAGTTTTTCGGGTCTGGGAAACCAACGAGAGAAAGTGTGCGTGCGTGTGCG
TGTGCCCTCCGTCGGAAAAAGGGGGGTTAAGGGCATTGCCCAATAGGAGAACGGAATTCT
GCTAAGCGTAACCGTTGGAAGCGATTGTGAGCGATAAAACCTGAAAGCAGAAACGGCGAA
GCAGAAGAAAGCGCAGTGTGTTCCAAAAAAAAGAAAAACATTGTTACTCAAAAGCGCTGT
GTGTTTAAACTGAAGCTAATTGTTGCTTCGCGCTTGTCGTGGAGTGTGGATGAACCTCAA
CCGATATTGAACGAGACACACACACACACACACACACACACTAAAATCCAGAGGAAAGAG
ACACGCAATGCATATATATCTATATTCTCTCTGTTCGTTATACCTGTATATAATCAAAGC
AGATGATTAAGGTTGAGATGAGCAGCCCCAGAAGCAGCAGTTGCAGCTGCTGCTGCAAGC
TCTGCCAAAACCGTCTCTGGACCATTTGCTCTAGTGGTCGAAAAAAAAAAAATAATAATG
AAGTAACAAACAAAACAGCACTAGT

consensusID : consensus_2618#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [TATTTACTTTATTAATTATTACTATTATCTTTATTGGTATTTCTTAAATACGATATGATTGCTACAATTAGTAACTGGTAACGTTAAACACACACACACACACCAACCCCCTATTGAGATACTTTTTATTGCAATTCTTTGTTAATTTGTTGATAGTCGATAATCGATCGCGCGCGTAATGATGGGGGGATAGTTTTTCGGGTCTGGGAAACCAACGAGAGAAAGTGTGCGTGCGTGTGCGTGTGCCCTCCGTCAGAAAAAGGGGGGTTAAGGGCATTGCCCAATAGGAGAACGGAATTCTGCTAAGCGTAAGCGTTGGAAGCGATTGTGAGCGATAAAACCTGAAAGCAGAAAGGGCGAAGCATAAGAAAGTGCAGTGTGTTCCAAAAAAAAGAAAAACATTGTTACTCAAAAAGCGCTGTGTGTTTAAACTGAAGCTAATTGTTGCTTCGCGCTTGTCGTGGAGTGTGGATGAACCTCAACCGATATTGAACGAGACACACACACACACTAAAATCCAGAGGAAAGAGACACGCAATGCATATATATCTATATTCTCTCTGTTCGTTATACCTGTATATAATCAAAGCAGATGATTAAGGNTGAGATGAGCAGCCCCAGAAGCAGCAGTTGCAGCTGCTGCTGCAAGCTCTGCCAAAACCGTCTCTGGACCATTTGCTCTA]

[+] EMBL BX627737             [TATTTACTTTATTAATTATTACTATTATCTTTATTGGTATTTCTTAAATACGATATGATTGCTACAATTAGTAACTGGTAACGTTAAACACACACACACACACCAACCCCCTATTGAGATACTTTTTATTGCAATTCTTTGTTAATTTGTTGATAGTCGATAATCGATCGCGCGCGTAATGATGGGGGGATAGTTTTTCGGGTCTGGGAAACCAACGAGAGAAAGTGTGCGTGCGTGTGCGTGTGCCCTCCGTCAGAAAAAGGGGGGTTAAGGGCATTGCCCAATAGGAGAACGGAATTCTGCTAAGCGTAAGCGTTGGAAGCGATTGTGAGCGATAAAACCTGAAAGCAGAAAGGGCGAAGCATAAGAAAGTGCAGTGTGTTCCAAAAAAAAGAAAAACATTGTTACTCAAAAAGCGCTGTGTGTTTAAACTGAAGCTAATTGTTGCTTCGCGCTTGTCGTGGAGTGTGGATGAACCTCAACCGATATTGAACGAGACACACACACACACTAAAATCCAGAGGAAAGAGACACGCAATGCATATATATCTATATTCTCTCTGTTCGTTATACCTGTATATAATCAAAGCAGATGATTAAGGNTGAGATGAGCAGCCCCAGAAGCAGCAGTTGCAGCTGCTGCTGCAAGCTCTGCCAAAACCGTCTCTGGACCATTTGCTCTA]




>consensus_2618#1
TATTTACTTTATTAATTATTACTATTATCTTTATTGGTATTTCTTAAATACGATATGATT
GCTACAATTAGTAACTGGTAACGTTAAACACACACACACACACCAACCCCCTATTGAGAT
ACTTTTTATTGCAATTCTTTGTTAATTTGTTGATAGTCGATAATCGATCGCGCGCGTAAT
GATGGGGGGATAGTTTTTCGGGTCTGGGAAACCAACGAGAGAAAGTGTGCGTGCGTGTGC
GTGTGCCCTCCGTCAGAAAAAGGGGGGTTAAGGGCATTGCCCAATAGGAGAACGGAATTC
TGCTAAGCGTAAGCGTTGGAAGCGATTGTGAGCGATAAAACCTGAAAGCAGAAAGGGCGA
AGCATAAGAAAGTGCAGTGTGTTCCAAAAAAAAGAAAAACATTGTTACTCAAAAAGCGCT
GTGTGTTTAAACTGAAGCTAATTGTTGCTTCGCGCTTGTCGTGGAGTGTGGATGAACCTC
AACCGATATTGAACGAGACACACACACACACTAAAATCCAGAGGAAAGAGACACGCAATG
CATATATATCTATATTCTCTCTGTTCGTTATACCTGTATATAATCAAAGCAGATGATTAA
GGNTGAGATGAGCAGCCCCAGAAGCAGCAGTTGCAGCTGCTGCTGCAAGCTCTGCCAAAA
CCGTCTCTGGACCATTTGCTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2618#0      ------------------------------------------------------------
consensus_2618#1      TATTTACTTTATTAATTATTACTATTATCTTTATTGGTATTTCTTAAATACGATATGATT 60
                                                                                  

consensus_2618#0      -GTACGGAAACCGAGGAAATTCCTTTTAAACACACACACACACCAACCCCCTATTGAGAT 59
consensus_2618#1      GCTACAATTAGTAACTGGTAACGTTAAACACACACACACACACCAACCCCCTATTGAGAT 120
                        ***    *   *       * **  * *******************************

consensus_2618#0      ACTTTTTATTGCAATTCTTTGTTAATTTGTTGATAGTCGATAATCGATCGCGCGCGTGAT 119
consensus_2618#1      ACTTTTTATTGCAATTCTTTGTTAATTTGTTGATAGTCGATAATCGATCGCGCGCGTAAT 180
                      ********************************************************* **

consensus_2618#0      GATGGGGGGATAGTTTTTCGGGTCTGGGAAACCAACGAGAGAAAGTGTGCGTGCGTGTGC 179
consensus_2618#1      GATGGGGGGATAGTTTTTCGGGTCTGGGAAACCAACGAGAGAAAGTGTGCGTGCGTGTGC 240
                      ************************************************************

consensus_2618#0      GTGTGCCCTCCGTCGGAAAAAGGGGGGTTAAGGGCATTGCCCAATAGGAGAACGGAATTC 239
consensus_2618#1      GTGTGCCCTCCGTCAGAAAAAGGGGGGTTAAGGGCATTGCCCAATAGGAGAACGGAATTC 300
                      ************** *********************************************

consensus_2618#0      TGCTAAGCGTAACCGTTGGAAGCGATTGTGAGCGATAAAACCTGAAAGCAGAAACGGCGA 299
consensus_2618#1      TGCTAAGCGTAAGCGTTGGAAGCGATTGTGAGCGATAAAACCTGAAAGCAGAAAGGGCGA 360
                      ************ ***************************************** *****

consensus_2618#0      AGCAGAAGAAAGCGCAGTGTGTTCCAAAAAAAAGAAAAACATTGTTACTCAAAA-GCGCT 358
consensus_2618#1      AGCATAAGAAAGTGCAGTGTGTTCCAAAAAAAAGAAAAACATTGTTACTCAAAAAGCGCT 420
                      **** ******* ***************************************** *****

consensus_2618#0      GTGTGTTTAAACTGAAGCTAATTGTTGCTTCGCGCTTGTCGTGGAGTGTGGATGAACCTC 418
consensus_2618#1      GTGTGTTTAAACTGAAGCTAATTGTTGCTTCGCGCTTGTCGTGGAGTGTGGATGAACCTC 480
                      ************************************************************

consensus_2618#0      AACCGATATTGAACGAGACACACACACACACACACACACACACTAAAATCCAGAGGAAAG 478
consensus_2618#1      AACCGATATTGAACGAGACACACACACACAC------------TAAAATCCAGAGGAAAG 528
                      *******************************            *****************

consensus_2618#0      AGACACGCAATGCATATATATCTATATTCTCTCTGTTCGTTATACCTGTATATAATCAAA 538
consensus_2618#1      AGACACGCAATGCATATATATCTATATTCTCTCTGTTCGTTATACCTGTATATAATCAAA 588
                      ************************************************************

consensus_2618#0      GCAGATGATTAAGGTTGAGATGAGCAGCCCCAGAAGCAGCAGTTGCAGCTGCTGCTGCAA 598
consensus_2618#1      GCAGATGATTAAGGNTGAGATGAGCAGCCCCAGAAGCAGCAGTTGCAGCTGCTGCTGCAA 648
                      ************** *********************************************

consensus_2618#0      GCTCTGCCAAAACCGTCTCTGGACCATTTGCTCTAGTGGTCGAAAAAAAAAAAATAATAA 658
consensus_2618#1      GCTCTGCCAAAACCGTCTCTGGACCATTTGCTCTA------------------------- 683
                      ***********************************                         

consensus_2618#0      TGAAGTAACAAACAAAACAGCACTAGT 685
consensus_2618#1      ---------------------------