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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence
[GGCCAGAATCCGCACGAGTGCGTGATTCCCGCTGGATGAGCTGCTAAACACTTCATTCGACGATTCGGCATCGGTTGCTATGACGGATGGGGAGCATGAGCTGCAGCAGCACCAGGGCCTCCTGTTCGGTAGGGATTCGTCGCCCACGGTCGAACTGCAGCACACGAAGGAGCAACTAAGCAAGCAGGAAAGCAGGGGTACGCCATTTGACCGCGGTGCTGGCGGAAGCGGAACAGGATCTCGCCAAGCTAACACAGCTGAACGAGCTGCTGAAGGAGGAGGTCCGGCGGCAGCAGCGCTCGATCGAGCGGGAGGCGCATGTACACAATTCGGAGTATTTGAAAAATGTGATATTCAAGTTTGTAACATTAAGCAATGGAGACGAACGGTCTAGGCTGGTGCCGGTTCTAAACACGATACTTAAGCTTAGCCCCGAGGAGACACAAAAATTGCAGAACGTTGCCAAAGGTTCTGATCCTAGTGCCCGTGGATGGACGGGTTNTGTGTGGAGTTAAAAGTGCATCGAATATTATGCCCCCATCTGGTTTCCCATTCCCTGGGTATTATAGTAGAAGAGTGTTAAAGCCGTTTATCCCGGTACTTGTTCAGATCGNTTCCTAACGGGCAGTTTGGTTACCCCTTAATTACCGCCACNCACGATTGGCCAAATCGGATTGGAAGGCCATTTTGGCTTTCGNATTGACCCGGGTTCCNAGATTTTGGTAAGGTTTAAAGGGTTGGACAAGGAAGCTTGAAT]
[+] EMBL BX467447 [GGCCAGAATCCGCACGAGTGCGTGATTCCCGCTGGATGAGCTGCTAAACACTTCATTCGACGATTCGGCATCGGTTGCTATGACGGATGGGGAGCATGAGCTGCAGCAGCACCAGGGCCTCCTGTTCGGTAGGGATTCGTCGCCCACGGTCGAACTGCAGCACACGAAGGAGCAACTAAGCAAGCAGGAAAGCAGGGGTACGCCATTTGACCGCGGTGCTGGCGGAAGCGGAACAGGATCTCGCCAAGCTAACACAGCTGAACGAGCTGCTGAAGGAGGAGGTCCGGCGGCAGCAGCGCTCGATCGAGCGGGAGGCGCATGTACACAATTCGGAGTATTTGAAAAATGTGATATTCAAGTTTGTAACATTAAGCAATGGAGACGAACGGTCTAGGCTGGTGCCGGTTCTAAACACGATACTTAAGCTTAGCCCCGAGGAGACACAAAAATTGCAGAACGTTGCCAAAGGTTCTGATCCTAGTGCCCGTGGATGGACGGGTTNTGTGTGGAGTTAAAAGTGCATCGAATATTATGCCCCCATCTGGTTTCCCATTCCCTGGGTATTATAGTAGAAGAGTGTTAAAGCCGTTTATCCCGGTACTTGTTCAGATCGNTTCCTAACGGGCAGTTTGGTTACCCCTTAATTACCGCCACNCACGATTGGCCAAATCGGATTGGAAGGCCATTTTGGCTTTCGNATTGACCCGGGTTCCNAGATTTTGGTAAGGTTTAAAGGGTTGGACAAGGAAGCTTGAAT]
consensusID : consensus_263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[CCGGAGACACAAAAATTGCAGAACGTTGCCAAAGGTTCTGATCCTAGTGCCCGTGGATGGACGGGTTTGTTGTGGAGTTAAAAGTGCATCGAATACTATGCCCCCATCTGGTTCCATTCCTGGTTTTATAGTAGAAGAGTGTTAAACCTTTATCCCGTACTTGTTAGATAGTTCCTACGGCAGTTTGTACCCCTATCCCCCCCACTGCCAAATCGATTGAAGCATTTTGCCTTTCGATTATCCCGTCCGAATTTGGTAAGGTTTAAAGGGTGGAAAGAAACTGATTGCAATTTTAATCCTATATTATCACTCTTTATCGGCAATTGCACTGAACTCTAGAGCGCGTTTAGGAAGGAGCGATTATAATGTGTTATTAATATGGTTTTAATTAATTATTGCAACTTACTACCTACGAACTACATTTCTCTGCATGCCGTAATATACCCAGAGTATCCCGAATCGATTCCAATTTCTATAAATGCATTGTGTCCTTGGTAAAATTATGAGTTAACATTTATTGTACTGTACGAATTTGGTTGTTAGCTCTTTACTATAGCTAGCTTTTGCACTCTGTTTGAAATAAAGGGCAGTTTAGGTAGAACATTTTCTTGAAGGTGCAATA]
[+] EMBL BM590028 [CCGGAGACACAAAAATTGCAGAACGTTGCCAAAGGTTCTGATCCTAGTGCCCGTGGATGGACGGGTTTGTTGTGGAGTTAAAAGTGCATCGAATACTATGCCCCCATCTGGTTCCATTCCTGGTTTTATAGTAGAAGAGTGTTAAACCTTTATCCCGTACTTGTTAGATAGTTCCTACGGCAGTTTGTACCCCTATCCCCCCCACTGCCAAATCGATTGAAGCATTTTGCCTTTCGATTATCCCGTCCGAATTTGGTAAGGTTTAAAGGGTGGAAAGAAACTGATTGCAATTTTAATCCTATATTATCACTCTTTATCGGCAATTGCACTGAACTCTAGAGCGCGTTTAGGAAGGAGCGATTATAATGTGTTATTAATATGGTTTTAATTAATTATTGCAACTTACTACCTACGAACTACATTTCTCTGCATGCCGTAATATACCCAGAGTATCCCGAATCGATTCCAATTTCTATAAATGCATTGTGTCCTTGGTAAAATTATGAGTTAACATTTATTGTACTGTACGAATTTGGTTGTTAGCTCTTTACTATAGCTAGCTTTTGCACTCTGTTTGAAATAAAGGGCAGTTTAGGTAGAACATTTTCTTGAAGGTGCAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_263#0 GGCCAGAATCCGCACGAGTGCGTGATTCCCGCTGGATGAGCTGCTAAACACTTCATTCGA 60
consensus_263#1 ------------------------------------------------------------
consensus_263#0 CGATTCGGCATCGGTTGCTATGACGGATGGGGAGCATGAGCTGCAGCAGCACCAGGGCCT 120
consensus_263#1 ----------------------------------CCGGAGACACAAAAATTGCAGAACGT 26
* *** ** * *** * *
consensus_263#0 CCTGTTCGGTAGGGATTC-GTCGCCCACGGTCGAACTGCAGCACACGAAGGAGCAACTAA 179
consensus_263#1 TGCCAAAGGTTCTGATCCTAGTGCCCGTGGATGGACGG--GTTTGTTGTGGAGTTAA-AA 83
*** *** * **** ** * ** * * **** * **
consensus_263#0 GCAAGCAGGAAAGCAGGGGTACGCCATTTGACCGCGGTGCTGGCGGAAGCGGAACAGGAT 239
consensus_263#1 GTGCATCGAATACTATGC---CCCCATCTGGTTCCATTCCTGGTTTTATAGTAGAAGAGT 140
* * * * * * * **** ** * * **** * * * ** *
consensus_263#0 CTCGCCAAGCTAACACAGCTGAACGAGCTGCTGAAGGAGGAGGTCCGGCGGCAGCAGCGC 299
consensus_263#1 ---GTTAAACCTTTATC-CCGTACTTGTTAGATAGTTCCTACGGCAGTTTGTACCCCTAT 196
* ** * * * * ** * * * * * * * * * *
consensus_263#0 TCGATCGAGCGGGAGGCGCATGTACACAATTCGGAGTATTTGAAAAATGTGATATTCAAG 359
consensus_263#1 CCCCCCCACTGCCAAATCGATTGAAGCATTTTG---CCTTTCGATTATCCCGT-CCGAAT 252
* * * * * ** * ** ** * *** * ** * **
consensus_263#0 TTTGTAACATT-AAGCAATGGAGACGAACGGTCTAGGCTGGTGCCGGTTCTAAACACGAT 418
consensus_263#1 TTGGTAAGGTTTAAAGGGTGGAAAGAAACTGATTG---CAATTTTAATCCTATAT-TATC 308
** **** ** ** **** * *** * * * * *** *
consensus_263#0 ACTTAAGCTTAGCCCCGAGGAGACACAAAAATTGCAGAACGTTGCCAAAGGTTCTGATCC 478
consensus_263#1 ACTC---TTTATCGGCAATTGCAC-TGAACTCTAGAGCGCGTTTAGGAAGGAGC-GATTA 363
*** *** * * * ** ** * ** **** **** * ***
consensus_263#0 TAGTGCCCGTGGATGGACGGGTTNTGTGTGGAGTTAAAAGTGCATCGAATATTATGCCCC 538
consensus_263#1 TAATGT--GTTATTAATATGGTTTTA-----ATTAATTATTGCAACT--TACTAC-CTAC 413
** ** ** * **** * * * * * **** * ** ** * *
consensus_263#0 CATCTGGTTTCCCATTCCCTGGGTATTATAGTAGAAGAGTGTTAAAGCCGTTT--ATCCC 596
consensus_263#1 GAACTACATTTCTCTGCATGCCGTAATATACCCAGAGTATCCCGAATCGATTCCAATTTC 473
* ** ** * * * *** **** ** * ** * ** ** *
consensus_263#0 GGTACTTGTTCAGATCGNTTCCTAACGGGCAGTTTGGTTACCCCTTAATTACCGCCACNC 656
consensus_263#1 TATAAATGC----ATTGTGTCCTTGGTAAAATTATGAGTTAACATTTATTGT-ACTGTAC 528
** ** ** * **** * * ** * * ** *** * *
consensus_263#0 ACGATTGGCCAAATCGGATTGGAAGGCCATTTTGGCTTTCGNATTGACCCGGGTTCCNAG 716
consensus_263#1 GAATTTGGTTG--TTAGCTCTTTACTATAGCT-AGCTTTTGCACTCTGTTTGAAATAAAG 585
**** * * * * * * ***** * * * * **
consensus_263#0 ATTTTGGTAAGGTTTAAAGGGTTGGACAAGGAAGCTTGAAT 757
consensus_263#1 GGC--AGTTTAGGTAGAACATTTTCTTGAAGGTGCAATA-- 622
** * * ** ** * * ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||