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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence
[GCAAGAATCCCCCCAGTTATCCGGCATCGCNGGCCAATCGCTCCAAGGAGATTATACGCGCNCGGGGGAGCGAAAAATTTCCGGCATCATGAATGACGGCATNAACTCGCTAATCGCTACTATCTGGCCCGGTTTAAGTGACACGTACCGGCAGTGCCACGATCGATATGATGCTCGGCAACAACGTGTTCTGCCCGAGTCGGTGTCGGGCTCGGCTGGCACCCAGACCGCGCCACGGACGAGACGGACGCGCTGGAGTGGTGCGGAGCATGCTGCGCCTGCTGGTCGAGGACTGCCGNNGGCTGCTGCTCGGCACGGGCCAGCTTCCGGTCGGTGCCTGGGGTCTCATCGATGCCGATCCAAGGTAAGGGCGCCACACAACAACAAACAAACACCAAAAATGCCTTTCATGCGATGCCTTATTTGTTGTGTGCTTAGAAGGCCTGTATGTGTGTGTGTAGTAGTAGTTGTAGGTAGCTGCGGTAGTTGCTAAAACAGNTAAACAATAATCGAACCACTTTTTGCGGCAACCAANAACCAAAAACCCAAACAAGGCGTATTGCGTTGTAAAT]
[+] EMBL AL933299 [GCAAGAATCCCCCCAGTTATCCGGCATCGCNGGCCAATCGCTCCAAGGAGATTATACGCGCNCGGGGGAGCGAAAAATTTCCGGCATCATGAATGACGGCATNAACTCGCTAATCGCTACTATCTGGCCCGGTTTAAGTGACACGTACCGGCAGTGCCACGATCGATATGATGCTCGGCAACAACGTGTTCTGCCCGAGTCGGTGTCGGGCTCGGCTGGCACCCAGACCGCGCCACGGACGAGACGGACGCGCTGGAGTGGTGCGGAGCATGCTGCGCCTGCTGGTCGAGGACTGCCGNNGGCTGCTGCTCGGCACGGGCCAGCTTCCGGTCGGTGCCTGGGGTCTCATCGATGCCGATCCAAGGTAAGGGCGCCACACAACAACAAACAAACACCAAAAATGCCTTTCATGCGATGCCTTATTTGTTGTGTGCTTAGAAGGCCTGTATGTGTGTGTGTAGTAGTAGTTGTAGGTAGCTGCGGTAGTTGCTAAAACAGNTAAACAATAATCGAACCACTTTTTGCGGCAACCAANAACCAAAAACCCAAACAAGGCGTATTGCGTTGTAAAT]
consensusID : consensus_2647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[CCGGTTTCCACTGGCGCGACACGAACGGCCCGATCTGCAACCAGAAGGGCGTGTTCCGCGTCAACTGCATGGACTGTCTCGACCGCACGAACGTGGTGCAGACGGCCATCGGCAAGGCGGTGCTCGAGTCGCAGCTCGTCAAGCTCGGTCTCGCCATGCCGTACTCGCAGCTGCCGGACGCGCTCAAGGCCCCGTTCATGGTGCTGTGGGCGAACAACGGCGACGTCATCAGCCGGCAGTACGCGGGCACGAATGCGCTCAAGGGAGATTATACGCGCACGGGGGAGCGAAAAATTTCCGGCATCATGAAGGACGGCATGAACTCGGCTAATCGCTACTATCTGGCCCGGTTTAAGGACACGTACCGGCAGGCCACGATCGATATGATGCTCGGCAACAACGTGTCGCCCGAGTCGGTGTCGGCGCTCGGCGGCACCCAGACCGCCGCCACGGACGAGACGGACGCGCTGGAGGGTGCGGAGCATGCGCGCCTGCTGGTCGAGGACTGCCGGCGGCTGCTACTCGGCACGGCCCAGCTTC]
[+] EMBL BM628955 [CCGGTTTCCACTGGCGCGACACGAACGGCCCGATCTGCAACCAGAAGGGCGTGTTCCGCGTCAACTGCATGGACTGTCTCGACCGCACGAACGTGGTGCAGACGGCCATCGGCAAGGCGGTGCTCGAGTCGCAGCTCGTCAAGCTCGGTCTCGCCATGCCGTACTCGCAGCTGCCGGACGCGCTCAAGGCCCCGTTCATGGTGCTGTGGGCGAACAACGGCGACGTCATCAGCCGGCAGTACGCGGGCACGAATGCGCTCAAGGGAGATTATACGCGCACGGGGGAGCGAAAAATTTCCGGCATCATGAAGGACGGCATGAACTCGGCTAATCGCTACTATCTGGCCCGGTTTAAGGACACGTACCGGCAGGCCACGATCGATATGATGCTCGGCAACAACGTGTCGCCCGAGTCGGTGTCGGCGCTCGGCGGCACCCAGACCGCCGCCACGGACGAGACGGACGCGCTGGAGGGTGCGGAGCATGCGCGCCTGCTGGTCGAGGACTGCCGGCGGCTGCTACTCGGCACGGCCCAGCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2647#0 ------------------------------------------------------------
consensus_2647#1 CCGGTTTCCACTGGCGCGACACGAACGGCCCGATCTGCAACCAGAAGGGCGTGTTCCGCG 60
consensus_2647#0 ------------------------------------------------------------
consensus_2647#1 TCAACTGCATGGACTGTCTCGACCGCACGAACGTGGTGCAGACGGCCATCGGCAAGGCGG 120
consensus_2647#0 ------------------------------------------------------------
consensus_2647#1 TGCTCGAGTCGCAGCTCGTCAAGCTCGGTCTCGCCATGCCGTACTCGCAGCTGCCGGACG 180
consensus_2647#0 ---------------------------------GCAAGAATCCCCCCAGTTATCCGGCAT 27
consensus_2647#1 CGCTCAAGGCCCCGTTCATGGTGCTGTGGGCGAACAACGGCGACGTCA-TCAGCCGGCAG 239
*** * ** * * ******
consensus_2647#0 --CGCNGGCC--AAT-CGCTCCAAGGAGATTATACGCGCNCGGGGGAGCGAAAAATTTCC 82
consensus_2647#1 TACGCGGGCACGAATGCGCTCAAGGGAGATTATACGCGCACGGGGGAGCGAAAAATTTCC 299
*** *** *** ***** * *************** ********************
consensus_2647#0 GGCATCATGAATGACGGCATNAACTCG-CTAATCGCTACTATCTGGCCCGGTTTAAGTGA 141
consensus_2647#1 GGCATCATGAAGGACGGCATGAACTCGGCTAATCGCTACTATCTGGCCCGGTTTAAG-GA 358
*********** ******** ****** ***************************** **
consensus_2647#0 CACGTACCGGCAGTGCCACGATCGATATGATGCTCGGCAACAACGTGTTCTGCCCGAGTC 201
consensus_2647#1 CACGTACCGGCAG-GCCACGATCGATATGATGCTCGGCAACAACGTGT--CGCCCGAGTC 415
************* ********************************** *********
consensus_2647#0 GGTGTCGG-GCTCGGCTGGCACCCAGACCGC-GCCACGGACGAGACGGACGCGCTGGAGT 259
consensus_2647#1 GGTGTCGGCGCTCGGC-GGCACCCAGACCGCCGCCACGGACGAGACGGACGCGCTGGAG- 473
******** ******* ************** ***************************
consensus_2647#0 GGTGCGGAGCATGCTGCGCCTGCTGGTCGAGGACTGCCGNNGGCTGCTGCTCGGCACGGG 319
consensus_2647#1 GGTGCGGAGCATGC-GCGCCTGCTGGTCGAGGACTGCCGGCGGCTGCTACTCGGCACGGC 532
************** ************************ ******* **********
consensus_2647#0 CCAGCTTCCGGTCGGTGCCTGGGGTCTCATCGATGCCGATCCAAGGTAAGGGCGCCACAC 379
consensus_2647#1 CCAGCTTC---------------------------------------------------- 540
********
consensus_2647#0 AACAACAAACAAACACCAAAAATGCCTTTCATGCGATGCCTTATTTGTTGTGTGCTTAGA 439
consensus_2647#1 ------------------------------------------------------------
consensus_2647#0 AGGCCTGTATGTGTGTGTGTAGTAGTAGTTGTAGGTAGCTGCGGTAGTTGCTAAAACAGN 499
consensus_2647#1 ------------------------------------------------------------
consensus_2647#0 TAAACAATAATCGAACCACTTTTTGCGGCAACCAANAACCAAAAACCCAAACAAGGCGTA 559
consensus_2647#1 ------------------------------------------------------------
consensus_2647#0 TTGCGTTGTAAAT 572
consensus_2647#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||