cluster # 2741

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Anopheles gambiae
cluster # 2741 cluster # 2741 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2741#0 length = 750 sequences # 1

consensus_2741#1 length = 706 sequences # 1

consensusID : consensus_2741#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 750
fasta sequence

                              [CGATGAGATTCCTCCACGAAAATCGGGTACAAGGAATCGTCAGGACTCGGACGAAAGTCCACCTCGAAGGGGAAGATCGAAAGAGAAGGAAGTGTCAAAAAAAAAGAGCGCACGGAAAAACAATGCAGCATAGTGATTTCCCTACCATGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGAAGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCGCGCACCGATAGAGAGATGACGATGATGATGATGATGATGATGATGGTGATGATGTGGAGAAGATGAAACCCCAACAGGAAGCACACAGTGAGACTGCCCAAGACTAGGGGAGAGAACGAAAAAAATAACAAAAATAACACTAACATGCACCCAACACACACTATCGTCCTCGACAACGGGACAGTATTGATTGCGAACCGTTCTGATAGAAAGAGGATGAATGAACAAAAAAAAGAAGGCATCACCCTCTGGTGTCATACGCACGTGCACGGGGGTTTCGCAATTATTTTTCGCACTTTTTGTTCGATTTCCCACTGCTGCTTGTCGGTGGATGGCAAAGTTTTGATTTCATTTCGAGCCAGCTCGAGCGGAAGGCATGAACCACGCTTATGGCAAACATTGAGCAATGTTTCTTTCTTTTTCGTCTGCCTGCTTGCTCTCGTTTCCGCTGCGCACCTGTTGTTTATCAAAACAGCTTGTAACGTTGTGTTTAGATTTT]

[+] EMBL BX622037             [CGATGAGATTCCTCCACGAAAATCGGGTACAAGGAATCGTCAGGACTCGGACGAAAGTCCACCTCGAAGGGGAAGATCGAAAGAGAAGGAAGTGTCAAAAAAAAAGAGCGCACGGAAAAACAATGCAGCATAGTGATTTCCCTACCATGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGAAGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCGCGCACCGATAGAGAGATGACGATGATGATGATGATGATGATGATGGTGATGATGTGGAGAAGATGAAACCCCAACAGGAAGCACACAGTGAGACTGCCCAAGACTAGGGGAGAGAACGAAAAAAATAACAAAAATAACACTAACATGCACCCAACACACACTATCGTCCTCGACAACGGGACAGTATTGATTGCGAACCGTTCTGATAGAAAGAGGATGAATGAACAAAAAAAAGAAGGCATCACCCTCTGGTGTCATACGCACGTGCACGGGGGTTTCGCAATTATTTTTCGCACTTTTTGTTCGATTTCCCACTGCTGCTTGTCGGTGGATGGCAAAGTTTTGATTTCATTTCGAGCCAGCTCGAGCGGAAGGCATGAACCACGCTTATGGCAAACATTGAGCAATGTTTCTTTCTTTTTCGTCTGCCTGCTTGCTCTCGTTTCCGCTGCGCACCTGTTGTTTATCAAAACAGCTTGTAACGTTGTGTTTAGATTTT]




>consensus_2741#0
CGATGAGATTCCTCCACGAAAATCGGGTACAAGGAATCGTCAGGACTCGGACGAAAGTCC
ACCTCGAAGGGGAAGATCGAAAGAGAAGGAAGTGTCAAAAAAAAAGAGCGCACGGAAAAA
CAATGCAGCATAGTGATTTCCCTACCATGCTCGCTATAAATAGCGCGGTAGCTCCAGAAT
GCAGCCCTGGATATGTCGACCCACATGGAAGGACGAGCAGTTGCAGTCCCAGCCAGCACC
GAACCCAATCGCGCACCGATAGAGAGATGACGATGATGATGATGATGATGATGATGGTGA
TGATGTGGAGAAGATGAAACCCCAACAGGAAGCACACAGTGAGACTGCCCAAGACTAGGG
GAGAGAACGAAAAAAATAACAAAAATAACACTAACATGCACCCAACACACACTATCGTCC
TCGACAACGGGACAGTATTGATTGCGAACCGTTCTGATAGAAAGAGGATGAATGAACAAA
AAAAAGAAGGCATCACCCTCTGGTGTCATACGCACGTGCACGGGGGTTTCGCAATTATTT
TTCGCACTTTTTGTTCGATTTCCCACTGCTGCTTGTCGGTGGATGGCAAAGTTTTGATTT
CATTTCGAGCCAGCTCGAGCGGAAGGCATGAACCACGCTTATGGCAAACATTGAGCAATG
TTTCTTTCTTTTTCGTCTGCCTGCTTGCTCTCGTTTCCGCTGCGCACCTGTTGTTTATCA
AAACAGCTTGTAACGTTGTGTTTAGATTTT

consensusID : consensus_2741#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [GTGCTTGGGTGGCAAAAAAAAGAGCGCACGGAAAAACGATGCAGCATAGTGATTTCCCTACCACGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGATGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCACGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGATGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCACGCACCGATAGAGAGATGACGATGATGATGATGGTGATGATGTGGAGAAGATGAAACCCCAACAGGAAGCACACAGTGCCCAAGACTAGGGGAGAGAACGAAAAAAAAAAACAAAAATAACACTAACATGCACCCAACACACACTATCGTCCTCGACAACGGGACAGTATTGATTGCGAACCGTTCTGATAGAAAGAGGATGAATGAACAAAAAAAAAAGAAGGCATCACCCTCTGGTGTCATACGCACGTGCACGGGGGTTTCGCAATTATTTTTCGCACTTTTTGTTCGATTTCCCACTGCTGCTTGTCGGTGGATGGCCAAGTTTTGATTTCATTTCGAGCCAGCTCGAGCGGAAGGCATGAACCTCGCTTATGGCAAACATTGAGCAATGTTTCTTTCTTTTTCGTCTGCCTGCTTGCTCTCGTTTCCGCT]

[+] EMBL BX622886             [GTGCTTGGGTGGCAAAAAAAAGAGCGCACGGAAAAACGATGCAGCATAGTGATTTCCCTACCACGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGATGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCACGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGATGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCACGCACCGATAGAGAGATGACGATGATGATGATGGTGATGATGTGGAGAAGATGAAACCCCAACAGGAAGCACACAGTGCCCAAGACTAGGGGAGAGAACGAAAAAAAAAAACAAAAATAACACTAACATGCACCCAACACACACTATCGTCCTCGACAACGGGACAGTATTGATTGCGAACCGTTCTGATAGAAAGAGGATGAATGAACAAAAAAAAAAGAAGGCATCACCCTCTGGTGTCATACGCACGTGCACGGGGGTTTCGCAATTATTTTTCGCACTTTTTGTTCGATTTCCCACTGCTGCTTGTCGGTGGATGGCCAAGTTTTGATTTCATTTCGAGCCAGCTCGAGCGGAAGGCATGAACCTCGCTTATGGCAAACATTGAGCAATGTTTCTTTCTTTTTCGTCTGCCTGCTTGCTCTCGTTTCCGCT]




>consensus_2741#1
GTGCTTGGGTGGCAAAAAAAAGAGCGCACGGAAAAACGATGCAGCATAGTGATTTCCCTA
CCACGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCAC
ATGGATGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCACGCTCGCTATAAA
TAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGATGGACGAGCAG
TTGCAGTCCCAGCCAGCACCGAACCCAATCACGCACCGATAGAGAGATGACGATGATGAT
GATGGTGATGATGTGGAGAAGATGAAACCCCAACAGGAAGCACACAGTGCCCAAGACTAG
GGGAGAGAACGAAAAAAAAAAACAAAAATAACACTAACATGCACCCAACACACACTATCG
TCCTCGACAACGGGACAGTATTGATTGCGAACCGTTCTGATAGAAAGAGGATGAATGAAC
AAAAAAAAAAGAAGGCATCACCCTCTGGTGTCATACGCACGTGCACGGGGGTTTCGCAAT
TATTTTTCGCACTTTTTGTTCGATTTCCCACTGCTGCTTGTCGGTGGATGGCCAAGTTTT
GATTTCATTTCGAGCCAGCTCGAGCGGAAGGCATGAACCTCGCTTATGGCAAACATTGAG
CAATGTTTCTTTCTTTTTCGTCTGCCTGCTTGCTCTCGTTTCCGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2741#0      ------------CGATGAGATTCCTCCACGAAAATCGGGTACAAGGAATCGTCAGGACTC 48
consensus_2741#1      GTGCTTGGGTGGCAAAAAAAAGAGCGCACGGAAAAACGATGCAGCATAGTGATTTCCCTA 60
                                  * *  * *      **** ***   * * **    *  *      ** 

consensus_2741#0      GGACGAAAGTCCACCTCGAAGGGGAAGATCGAAAGAGAAG-----GAAGTGTCAAAAAAA 103
consensus_2741#1      CCACGCTCGCTATAAATAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCAC 120
                        ***   *           * ** ** ** * *  * **     **  **** *   * 

consensus_2741#0      AAGAGCGCACGGAAAA--ACAATGCAGCATAGTGATTT-CCCTACCATGCTCGCTATAAA 160
consensus_2741#1      ATGGATGGACGAGCAGTTGCAGTCCCAGCCAGCACCGAACCCAATCACGCTCGCTATAAA 180
                      * *   * ***   *    ** * *     **       *** * ** ************

consensus_2741#0      TAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGAAGGACGAGCAG 220
consensus_2741#1      TAGCGCGGTAGCTCCAGAATGCAGCCCTGGATATGTCGACCCACATGGATGGACGAGCAG 240
                      ************************************************* **********

consensus_2741#0      TTGCAGTCCCAGCCAGCACCGAACCCAATCGCGCACCGATAGAGAGATGACGATGATGAT 280
consensus_2741#1      TTGCAGTCCCAGCCAGCACCGAACCCAATCACGCACCGATAGAGAGATGACGATGATGAT 300
                      ****************************** *****************************

consensus_2741#0      GATGATGATGATGATGGTGATGATGTGGAGAAGATGAAACCCCAACAGGAAGCACACAGT 340
consensus_2741#1      GATG------------GTGATGATGTGGAGAAGATGAAACCCCAACAGGAAGCACACAG- 347
                      ****            ******************************************* 

consensus_2741#0      GAGACTGCCCAAGACTAGGGGAGAGAACGAAAAAAATAA-CAAAAATAACACTAACATGC 399
consensus_2741#1      -----TGCCCAAGACTAGGGGAGAGAACGAAAAAAAAAAACAAAAATAACACTAACATGC 402
                           ******************************* ** ********************

consensus_2741#0      ACCCAACACACACTATCGTCCTCGACAACGGGACAGTATTGATTGCGAACCGTTCTGATA 459
consensus_2741#1      ACCCAACACACACTATCGTCCTCGACAACGGGACAGTATTGATTGCGAACCGTTCTGATA 462
                      ************************************************************

consensus_2741#0      GAAAGAGGATGAATGAACAAAAAAAA--GAAGGCATCACCCTCTGGTGTCATACGCACGT 517
consensus_2741#1      GAAAGAGGATGAATGAACAAAAAAAAAAGAAGGCATCACCCTCTGGTGTCATACGCACGT 522
                      **************************  ********************************

consensus_2741#0      GCACGGGGGTTTCGCAATTATTTTTCGCACTTTTTGTTCGATTTCCCACTGCTGCTTGTC 577
consensus_2741#1      GCACGGGGGTTTCGCAATTATTTTTCGCACTTTTTGTTCGATTTCCCACTGCTGCTTGTC 582
                      ************************************************************

consensus_2741#0      GGTGGATGGCAAAGTTTTGATTTCATTTCGAGCCAGCTCGAGCGGAAGGCATGAACCACG 637
consensus_2741#1      GGTGGATGGCCAAGTTTTGATTTCATTTCGAGCCAGCTCGAGCGGAAGGCATGAACCTCG 642
                      ********** ********************************************** **

consensus_2741#0      CTTATGGCAAACATTGAGCAATGTTTCTTTCTTTTTCGTCTGCCTGCTTGCTCTCGTTTC 697
consensus_2741#1      CTTATGGCAAACATTGAGCAATGTTTCTTTCTTTTTCGTCTGCCTGCTTGCTCTCGTTTC 702
                      ************************************************************

consensus_2741#0      CGCTGCGCACCTGTTGTTTATCAAAACAGCTTGTAACGTTGTGTTTAGATTTT 750
consensus_2741#1      CGCT------------------------------------------------- 706
                      ****