cluster # 275

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Anopheles gambiae
cluster # 275 cluster # 275 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_275#0 length = 600 sequences # 1

consensus_275#1 length = 463 sequences # 1

consensusID : consensus_275#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTTCTTCTCGAAATGAGTAGACCTCATTATCAAGCAAAAGAATTCCATCCATGGCAGTGGCGTACTTCTTTTTTTTTCTTTTCTTTTCTGTTCTCCTTATTCGTATCTCGCATTTGGTACGGTTTCTTTAATGTCTTGTGGGGTCTTCATATAAATAAGTGCGATGGTGTTTTTGGTTTTGTTTTTTTTTTGCTTTCGATCCTCGTTATTTTCTCCTTTACTTAGCAAACGATGGAACTTTAGCAATGAACGCGAGACTTCATTCATATTTATATGTGTACGCTTATTTGAACGTCTATGCGAGCGAGGAGTGTGAGTTGGCATGTATGTAAAGGACTTGTTTTGTTCCCTTGCTTCCAATCCTGAGTCGGCTTTCATGCCGAATACGTTACACTTTTTCGAGCCTTTCGTAGCTCTTCTTGCTTTCTTACCATTACAATGCCATTTCTGAGAACTCACGGGACAGAAATGTCCTTTCCGGATGATTCTTTTTTCAGGATTCATGACTACATGTCTGGTATTTTATATTATTTCTTCATAATTTAACGGTTTTGTTACACTTTTATTCAATTAG]

[+] EMBL BM630866             [CCGCGGACGCGTGGGCGGACGCGTGGGTTCTTCTCGAAATGAGTAGACCTCATTATCAAGCAAAAGAATTCCATCCATGGCAGTGGCGTACTTCTTTTTTTTTCTTTTCTTTTCTGTTCTCCTTATTCGTATCTCGCATTTGGTACGGTTTCTTTAATGTCTTGTGGGGTCTTCATATAAATAAGTGCGATGGTGTTTTTGGTTTTGTTTTTTTTTTGCTTTCGATCCTCGTTATTTTCTCCTTTACTTAGCAAACGATGGAACTTTAGCAATGAACGCGAGACTTCATTCATATTTATATGTGTACGCTTATTTGAACGTCTATGCGAGCGAGGAGTGTGAGTTGGCATGTATGTAAAGGACTTGTTTTGTTCCCTTGCTTCCAATCCTGAGTCGGCTTTCATGCCGAATACGTTACACTTTTTCGAGCCTTTCGTAGCTCTTCTTGCTTTCTTACCATTACAATGCCATTTCTGAGAACTCACGGGACAGAAATGTCCTTTCCGGATGATTCTTTTTTCAGGATTCATGACTACATGTCTGGTATTTTATATTATTTCTTCATAATTTAACGGTTTTGTTACACTTTTATTCAATTAG]




>consensus_275#0
CCGCGGACGCGTGGGCGGACGCGTGGGTTCTTCTCGAAATGAGTAGACCTCATTATCAAG
CAAAAGAATTCCATCCATGGCAGTGGCGTACTTCTTTTTTTTTCTTTTCTTTTCTGTTCT
CCTTATTCGTATCTCGCATTTGGTACGGTTTCTTTAATGTCTTGTGGGGTCTTCATATAA
ATAAGTGCGATGGTGTTTTTGGTTTTGTTTTTTTTTTGCTTTCGATCCTCGTTATTTTCT
CCTTTACTTAGCAAACGATGGAACTTTAGCAATGAACGCGAGACTTCATTCATATTTATA
TGTGTACGCTTATTTGAACGTCTATGCGAGCGAGGAGTGTGAGTTGGCATGTATGTAAAG
GACTTGTTTTGTTCCCTTGCTTCCAATCCTGAGTCGGCTTTCATGCCGAATACGTTACAC
TTTTTCGAGCCTTTCGTAGCTCTTCTTGCTTTCTTACCATTACAATGCCATTTCTGAGAA
CTCACGGGACAGAAATGTCCTTTCCGGATGATTCTTTTTTCAGGATTCATGACTACATGT
CTGGTATTTTATATTATTTCTTCATAATTTAACGGTTTTGTTACACTTTTATTCAATTAG

consensusID : consensus_275#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [CCGCCCACGCGTCCGGCCATAAAACCACAAGGATACGGACTGACGCCGGTTGGGTCGATGCAGAGGCTCGGAAGGTTGGCGGAAAAGTGGCCCCAAAATCATTCCCTACTTTTCCATGGTAGGGACGGCGACAATGGGTTTGCCCGCGCGGTGAGGCTGCCAATATTTCTTTGCACAAACATCTTCATCTTTTCGGGGCGGTGCAAGTTTATGTGTTTATTTGTGTGGCTGTCAGTTGTGCGTGTGCGTCTGTGCGTCTGTATGAATAGGATCGTTTCTTCTCGAAATGAGTAGACCTCATTATCAAGCAAAAGAATTCCATCCATGGCAGTGGCGTACTTCTTTTTTTTCTTTTCTTTATTCGCATCTCGCATTTGGTACGGTTTCTTTAATGTCTTGTGGGGTCTTCATATAAATAAGTGCGATGGTGTTTTTGGTTTTGTTTTTCTTGCTTTCGATCCTC]

[+] EMBL BM626639             [CCGCCCACGCGTCCGGCCATAAAACCACAAGGATACGGACTGACGCCGGTTGGGTCGATGCAGAGGCTCGGAAGGTTGGCGGAAAAGTGGCCCCAAAATCATTCCCTACTTTTCCATGGTAGGGACGGCGACAATGGGTTTGCCCGCGCGGTGAGGCTGCCAATATTTCTTTGCACAAACATCTTCATCTTTTCGGGGCGGTGCAAGTTTATGTGTTTATTTGTGTGGCTGTCAGTTGTGCGTGTGCGTCTGTGCGTCTGTATGAATAGGATCGTTTCTTCTCGAAATGAGTAGACCTCATTATCAAGCAAAAGAATTCCATCCATGGCAGTGGCGTACTTCTTTTTTTTCTTTTCTTTATTCGCATCTCGCATTTGGTACGGTTTCTTTAATGTCTTGTGGGGTCTTCATATAAATAAGTGCGATGGTGTTTTTGGTTTTGTTTTTCTTGCTTTCGATCCTC]




>consensus_275#1
CCGCCCACGCGTCCGGCCATAAAACCACAAGGATACGGACTGACGCCGGTTGGGTCGATG
CAGAGGCTCGGAAGGTTGGCGGAAAAGTGGCCCCAAAATCATTCCCTACTTTTCCATGGT
AGGGACGGCGACAATGGGTTTGCCCGCGCGGTGAGGCTGCCAATATTTCTTTGCACAAAC
ATCTTCATCTTTTCGGGGCGGTGCAAGTTTATGTGTTTATTTGTGTGGCTGTCAGTTGTG
CGTGTGCGTCTGTGCGTCTGTATGAATAGGATCGTTTCTTCTCGAAATGAGTAGACCTCA
TTATCAAGCAAAAGAATTCCATCCATGGCAGTGGCGTACTTCTTTTTTTTCTTTTCTTTA
TTCGCATCTCGCATTTGGTACGGTTTCTTTAATGTCTTGTGGGGTCTTCATATAAATAAG
TGCGATGGTGTTTTTGGTTTTGTTTTTCTTGCTTTCGATCCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_275#0      CCGCGGACGCGTGGGCGGACGCGTGGGTTCTTCTCGAAATGAGTAGACCTCATTATCAAG 60
consensus_275#1      ------------------------------------------------------------
                                                                                 

consensus_275#0      CAAAAGAATTCCATCCATGGCAGTGGCGTACTTCTTTTTTTTTCTTTTCTTTTCTGTTCT 120
consensus_275#1      --------------------------------CCGCCCACGCGTCCGGCCATAAAACCAC 28
                                                      *              *  *        

consensus_275#0      CCTTATTCGTATCTCGCATTTGGTACGGTTTCTTTAATGTCTTGTGGGGTCTTCATATAA 180
consensus_275#1      AAGGATACGGA-CTGACGCC-GGTTGGGTCGATGCAGAGGCTCGGAAGGTTGGCGGAAAA 86
                         ** ** * **  *    ***  ***   *  *  * ** *   ***   *  * **

consensus_275#0      ATAAGTGCGATGGTGTTTTTGGTTTTGTTTTTTTTTTGCTTTCGATCCTCGTTATTTTCT 240
consensus_275#1      GTGGCCCCAAAATCATTCCCTACTTTTCCATGGTAGGGACGGCGACAATGGGT-TTGCCC 145
                      *     * *     **      ***    *  *   *    ***   * * * **  * 

consensus_275#0      CCTTTACTTAGCAAACGATGGAACTTTAGCAATGAACGCGAGACTTCATTCATATTTATA 300
consensus_275#1      GCGCGGTGAGGCTGCCAATATTTCTTTGC--ACAAACAT----CTTCATCTTTTCGGGGC 199
                      *        **   * **    ****    *  ***      ******   *       

consensus_275#0      TGTGTACGCTTATTTGAACGTCTATGCGAGCGAGGAGTGTGAGTTGGCATGTATGTAAAG 360
consensus_275#1      GGTGCAAGTTTATGTGTTTATTTGTGTGGCTGTCAGTTGTGCGTGTGCGTCTGTGCGTCT 259
                      *** * * **** **    * * ** *   *     **** **  ** * * **     

consensus_275#0      GACTTGTTTTGTTCCCTTGCTTCCAATCCTGAGTCGGCTTTCATGCCGAATACGTTACAC 420
consensus_275#1      G-TATGAATAGGATCGTTTCTTCTCGAAATGAGTAGACCTCATTATCAAGCAAAAGAATT 318
                     *   **  * *   * ** ****      ***** * * *   *  * *  *    *   

consensus_275#0      TTTTTCGAGCCTTTCGTAGCTCTTCTTGCTTTCTTACCATTACAATGCCATTTCTGAGAA 480
consensus_275#1      CCATCCATGGCAGTGGCGTACTTCTTTTTTTTCTTTTCTTTAT--TCGCATCTCGCATTT 376
                        * *  * *  * *      *  **  ******  * ***   *  *** **  *   

consensus_275#0      CTCACGGGA-CAGAAATGTCCTTTCCGGATGATTCTTTTTTCAGGATTCATGACTACATG 539
consensus_275#1      GGTACGGTTTCTTTAATGTCTT----GTGGGGTCTTCATATAAATAAGTGCGATGGTGTT 432
                        ****   *   ****** *    *   * *  *  * * *  *     **     * 

consensus_275#0      TCTGGTATTTTATATTATTTCTTCATAATTTAACGGTTTTGTTACACTTTTATTCAATTA 599
consensus_275#1      TTTGGTTTTGTTTTTCTTGCTTTCGATCCTC----------------------------- 463
                     * **** ** * * *  *   ***     *                              

consensus_275#0      G 600
consensus_275#1      -