cluster # 280

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Anopheles gambiae
cluster # 280 cluster # 280 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_280#0 length = 686 sequences # 1

consensus_280#1 length = 135 sequences # 1

consensusID : consensus_280#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [CCGCCCACGCGTCCGCAAGGACTACTTCAGCCAGTACAACAAGAACCACAAGTACCAGAACGATTACTACGAGCAGTTCGGAAACAAGAACCAGGAGGAGTTCCAGAAGTGGTCCACCACCCGCATCGCCAAGCTGCTGAACATCGATCCCGAGGAGGCTGAGGAGCTGGAGGGTCAGTTCATGTTCCAGATCTTCAACGGAGAGCGCTTCTTCGCCTTCAACAACCAGACCATTGAGCAGTTCCCGAGCCTTGTGAAGAAGTACTTCGAGGACTTCGAGGATGGTTTCGCCTACAACATGACCAAGTTCTATCAGCAGAACGTTGTCACCATGGCCTTCCCGCTGGCCACCGGTCTGCCATTCCACTACAGCCTGAAGACCCCGACTCTGATGAAGTTCGAGTTCGAGGCCTCTGCCACCACCTACCCGAGCATTTTCAAGACCCCCACTGGATACCCCGAGAAGGAGAACGACGACTTTATCCATATGCCCCGTTGGTTCAACGGATCCGCTGATGTGAACATGGCCTACTCTCGCCTGGTTGATGCCAAGGTTGGCTTCATTACGCCCTTCGACCACCAGCGTTATGTCGCCGGTTACCAGAAGAAGTTCCAGGGATACCTGCCATTCAGCTTCGACTTTGGCTTCGACTTTGAGAACAACGACTTTGAAGTGAACGTGCAGC]

[+] EMBL BM577939             [CCGCCCACGCGTCCGCAAGGACTACTTCAGCCAGTACAACAAGAACCACAAGTACCAGAACGATTACTACGAGCAGTTCGGAAACAAGAACCAGGAGGAGTTCCAGAAGTGGTCCACCACCCGCATCGCCAAGCTGCTGAACATCGATCCCGAGGAGGCTGAGGAGCTGGAGGGTCAGTTCATGTTCCAGATCTTCAACGGAGAGCGCTTCTTCGCCTTCAACAACCAGACCATTGAGCAGTTCCCGAGCCTTGTGAAGAAGTACTTCGAGGACTTCGAGGATGGTTTCGCCTACAACATGACCAAGTTCTATCAGCAGAACGTTGTCACCATGGCCTTCCCGCTGGCCACCGGTCTGCCATTCCACTACAGCCTGAAGACCCCGACTCTGATGAAGTTCGAGTTCGAGGCCTCTGCCACCACCTACCCGAGCATTTTCAAGACCCCCACTGGATACCCCGAGAAGGAGAACGACGACTTTATCCATATGCCCCGTTGGTTCAACGGATCCGCTGATGTGAACATGGCCTACTCTCGCCTGGTTGATGCCAAGGTTGGCTTCATTACGCCCTTCGACCACCAGCGTTATGTCGCCGGTTACCAGAAGAAGTTCCAGGGATACCTGCCATTCAGCTTCGACTTTGGCTTCGACTTTGAGAACAACGACTTTGAAGTGAACGTGCAGC]




>consensus_280#0
CCGCCCACGCGTCCGCAAGGACTACTTCAGCCAGTACAACAAGAACCACAAGTACCAGAA
CGATTACTACGAGCAGTTCGGAAACAAGAACCAGGAGGAGTTCCAGAAGTGGTCCACCAC
CCGCATCGCCAAGCTGCTGAACATCGATCCCGAGGAGGCTGAGGAGCTGGAGGGTCAGTT
CATGTTCCAGATCTTCAACGGAGAGCGCTTCTTCGCCTTCAACAACCAGACCATTGAGCA
GTTCCCGAGCCTTGTGAAGAAGTACTTCGAGGACTTCGAGGATGGTTTCGCCTACAACAT
GACCAAGTTCTATCAGCAGAACGTTGTCACCATGGCCTTCCCGCTGGCCACCGGTCTGCC
ATTCCACTACAGCCTGAAGACCCCGACTCTGATGAAGTTCGAGTTCGAGGCCTCTGCCAC
CACCTACCCGAGCATTTTCAAGACCCCCACTGGATACCCCGAGAAGGAGAACGACGACTT
TATCCATATGCCCCGTTGGTTCAACGGATCCGCTGATGTGAACATGGCCTACTCTCGCCT
GGTTGATGCCAAGGTTGGCTTCATTACGCCCTTCGACCACCAGCGTTATGTCGCCGGTTA
CCAGAAGAAGTTCCAGGGATACCTGCCATTCAGCTTCGACTTTGGCTTCGACTTTGAGAA
CAACGACTTTGAAGTGAACGTGCAGC

consensusID : consensus_280#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 135
fasta sequence

                              [GACCCACGCGTCCGCTGCCATTCAGCTTCGACTTTGGCTTCGACTTTGAGAACAACGACTTTGAAGTGAACACCCGTGCAGCCGCTGGAGCCCAAGAAGGACGTGCTACTCTTTCCCACATGGAGCTCGTGGCCG]

[+] EMBL BM599483             [GACCCACGCGTCCGCTGCCATTCAGCTTCGACTTTGGCTTCGACTTTGAGAACAACGACTTTGAAGTGAACACCCGTGCAGCCGCTGGAGCCCAAGAAGGACGTGCTACTCTTTCCCACATGGAGCTCGTGGCCG]




>consensus_280#1
GACCCACGCGTCCGCTGCCATTCAGCTTCGACTTTGGCTTCGACTTTGAGAACAACGACT
TTGAAGTGAACACCCGTGCAGCCGCTGGAGCCCAAGAAGGACGTGCTACTCTTTCCCACA
TGGAGCTCGTGGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_280#0      CCGCCCACGCGTCCGCAAGGACTACTTCAGCCAGTACAACAAGAACCACAAGTACCAGAA 60
consensus_280#1      -GACCCACGCGTCCGCTGCCA----TTCAGC---TTCGACTTTGGCTTCGACTTTGAGAA 52
                        *************    *    ******   * * **     *  * * *   ****

consensus_280#0      CGATTACTACGAGCAGTTCGGAAACAAGAACCAGGAGGAGTTCCAGAAGTGGTCCACCAC 120
consensus_280#1      CAACGACTTTGA--AGTGAACACCCGTGCAGCCGCTGGAGCCCAAGAAG-GACGTGCTAC 109
                     * *  ***  **  ***    *  *  * * * *  ****  * ***** *     * **

consensus_280#0      CCGCATCGCCAAGCTGCTGAACATCGATCCCGAGGAGGCTGAGGAGCTGGAGGGTCAGTT 180
consensus_280#1      TCTTTCCCACATGGAGCTCGTGGCCG---------------------------------- 135
                      *    *  ** *  ***      **                                  

consensus_280#0      CATGTTCCAGATCTTCAACGGAGAGCGCTTCTTCGCCTTCAACAACCAGACCATTGAGCA 240
consensus_280#1      ------------------------------------------------------------
                                                                                 

consensus_280#0      GTTCCCGAGCCTTGTGAAGAAGTACTTCGAGGACTTCGAGGATGGTTTCGCCTACAACAT 300
consensus_280#1      ------------------------------------------------------------
                                                                                 

consensus_280#0      GACCAAGTTCTATCAGCAGAACGTTGTCACCATGGCCTTCCCGCTGGCCACCGGTCTGCC 360
consensus_280#1      ------------------------------------------------------------
                                                                                 

consensus_280#0      ATTCCACTACAGCCTGAAGACCCCGACTCTGATGAAGTTCGAGTTCGAGGCCTCTGCCAC 420
consensus_280#1      ------------------------------------------------------------
                                                                                 

consensus_280#0      CACCTACCCGAGCATTTTCAAGACCCCCACTGGATACCCCGAGAAGGAGAACGACGACTT 480
consensus_280#1      ------------------------------------------------------------
                                                                                 

consensus_280#0      TATCCATATGCCCCGTTGGTTCAACGGATCCGCTGATGTGAACATGGCCTACTCTCGCCT 540
consensus_280#1      ------------------------------------------------------------
                                                                                 

consensus_280#0      GGTTGATGCCAAGGTTGGCTTCATTACGCCCTTCGACCACCAGCGTTATGTCGCCGGTTA 600
consensus_280#1      ------------------------------------------------------------
                                                                                 

consensus_280#0      CCAGAAGAAGTTCCAGGGATACCTGCCATTCAGCTTCGACTTTGGCTTCGACTTTGAGAA 660
consensus_280#1      ------------------------------------------------------------
                                                                                 

consensus_280#0      CAACGACTTTGAAGTGAACGTGCAGC 686
consensus_280#1      --------------------------