|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_282#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence
[GGCAAGATTCGCCACGAGGTTTAACAGGTCGCAGGCCGAGTTATAGAAGACATTCATCCGATCGTTTTAGAGTCCAAGTTTGTGGCCCCCTCCCCACTGGGCGTTTAGCAATGCCAGGGAAAGGGAACAGCAGATCTATATATACATATATTGAATTCAAAGCTTTATTATTGACTTCTTTCGCACTATCCGCATCTCCTGCAAGCAAAACCGTGCAAAACAAAAACCGTAAGATTAGTGCTACACATATATGTCAGAATATTATTACATATTACCCAACCCACACNCCGCACGGGCTGGTTGANCTCGGTTAAACAAACGGTTGCAATCCACTACTACTACTATTACTACTACTATTACTGCGTACTATTACTATCAATGCGATAACTGAGTGTGAGGGATATAGAGCAAGAGTGCTCTTATAAGTTTGCCAAATTATGTGTGATGTTTGAATTTAACTTNCTGTTANCGGCTTCTTCTGGCAAAGTGATACATAAATACATACACACAAAGAGAGAGAGACACACATACACACACACACACACACCTTTGCAACGAAATCATTTAGCATTAACGAAGCATTTCGGCACGAAATCAACGATCGCCTCCACTGTGCTTGGGTATTCGAGCAGAGGTAGTACTACATTCAAGTGCATATTTAGTGACTTTATGCTGCCCCTCGCGGATATGTAGCAGGCGACCAAGCGTCCANGCCGNCCNGCCGGNGCCCAGGGACCACGGACGCAACGACGACCG]
[+] EMBL AL934428 [GGCAAGATTCGCCACGAGGTTTAACAGGTCGCAGGCCGAGTTATAGAAGACATTCATCCGATCGTTTTAGAGTCCAAGTTTGTGGCCCCCTCCCCACTGGGCGTTTAGCAATGCCAGGGAAAGGGAACAGCAGATCTATATATACATATATTGAATTCAAAGCTTTATTATTGACTTCTTTCGCACTATCCGCATCTCCTGCAAGCAAAACCGTGCAAAACAAAAACCGTAAGATTAGTGCTACACATATATGTCAGAATATTATTACATATTACCCAACCCACACNCCGCACGGGCTGGTTGANCTCGGTTAAACAAACGGTTGCAATCCACTACTACTACTATTACTACTACTATTACTGCGTACTATTACTATCAATGCGATAACTGAGTGTGAGGGATATAGAGCAAGAGTGCTCTTATAAGTTTGCCAAATTATGTGTGATGTTTGAATTTAACTTNCTGTTANCGGCTTCTTCTGGCAAAGTGATACATAAATACATACACACAAAGAGAGAGAGACACACATACACACACACACACACACCTTTGCAACGAAATCATTTAGCATTAACGAAGCATTTCGGCACGAAATCAACGATCGCCTCCACTGTGCTTGGGTATTCGAGCAGAGGTAGTACTACATTCAAGTGCATATTTAGTGACTTTATGCTGCCCCTCGCGGATATGTAGCAGGCGACCAAGCGTCCANGCCGNCCNGCCGGNGCCCAGGGACCACGGACGCAACGACGACCG]
consensusID : consensus_282#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence
[GTGACCAAACTGAGGAATAAAGCACAACATTTAAAGTAGGGAATCGGTTGGCAGATAGGAGCCTCCCTCTCGAAGAACCTCAAAACAAAGAGGAAAACAAGAGAACAAAGGTTCCACGATTTGGAAGAACAAACTAGCGAATAGAGAGAGAGCAAGGAAGAGGAAGCGCACGTCTAAAGCGCGAAGAGA]
[+] EMBL BX608080 [GTGACCAAACTGAGGAATAAAGCACAACATTTAAAGTAGGGAATCGGTTGGCAGATAGGAGCCTCCCTCTCGAAGAACCTCAAAACAAAGAGGAAAACAAGAGAACAAAGGTTCCACGATTTGGAAGAACAAACTAGCGAATAGAGAGAGAGCAAGGAAGAGGAAGCGCACGTCTAAAGCGCGAAGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_282#0 GGCAAGATTCGCCACGAGGTTTAACAGGTCGCAGGCCGAGTTATAGAAGACATTCATCCG 60
consensus_282#1 ------------------------------------------------------------
consensus_282#0 ATCGTTTTAGAGTCCAAGTTTGTGGCCCCCTCCCCACTGGGCGTTTAGCAATGCCAGGGA 120
consensus_282#1 ------------------------------------------------------------
consensus_282#0 AAGGGAACAGCAGATCTATATATACATATATTGAATTCAAAGCTTTATTATTGACTTCTT 180
consensus_282#1 ------------------------------------------------------------
consensus_282#0 TCGCACTATCCGCATCTCCTGCAAGCAAAACCGTGCAAAACAAAAACCGTAAGATTAGTG 240
consensus_282#1 ------------------------------------------------------------
consensus_282#0 CTACACATATATGTCAGAATATTATTACATATTACCCAACCCACACNCCGCACGGGCTGG 300
consensus_282#1 ------------------------------------------------------------
consensus_282#0 TTGANCTCGGTTAAACAAACGGTTGCAATCCACTACTACTACTATTACTACTACTATTAC 360
consensus_282#1 ------------------------------------------------------------
consensus_282#0 TGCGTACTATTACTATCAATGCGATAACTGAGTGTGAGGGATATAGAGCAAGAGTGCTCT 420
consensus_282#1 -----------------------GTGACCAAAC-TGAGGAATAAAGCACAACA------T 30
* ** * ***** *** ** *** * *
consensus_282#0 TATAAGTTTGCCAAATTATGTGTGATGTTTGAATTTAACTTNCTGTTANCGGCTTCTTCT 480
consensus_282#1 TTAAAGTAGG--GAATCGGTTGGCAGATAGGAGCCTCCCTCTC---GAAGAACCTCAAAA 85
* **** * *** ** * * ** * ** * * * **
consensus_282#0 GGCAAAGTGATACATAAATACATACACACAAAGAGAGAGAGACACACATACACACACACA 540
consensus_282#1 CAAAGAGGAAAACAAGAGAACAAAGGTTCCACGATTTGGAAGAACAAACTAGCGAATAGA 145
* ** * *** * *** * * * ** ** *** * * * * *
consensus_282#0 CACACACCTTTGCAACGAAATCATTTAGCATTAACGAAGCATTTCGGCACGAAATCAACG 600
consensus_282#1 GAGAGA-----GCAAGGAAGAGGAAGCGCACGTCTAAAGCGCGAAGAGA----------- 189
* * * **** *** *** **** * *
consensus_282#0 ATCGCCTCCACTGTGCTTGGGTATTCGAGCAGAGGTAGTACTACATTCAAGTGCATATTT 660
consensus_282#1 ------------------------------------------------------------
consensus_282#0 AGTGACTTTATGCTGCCCCTCGCGGATATGTAGCAGGCGACCAAGCGTCCANGCCGNCCN 720
consensus_282#1 ------------------------------------------------------------
consensus_282#0 GCCGGNGCCCAGGGACCACGGACGCAACGACGACCG 756
consensus_282#1 ------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||