cluster # 2835

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Anopheles gambiae
cluster # 2835 cluster # 2835 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2835#0 length = 628 sequences # 1

consensus_2835#1 length = 591 sequences # 1

consensusID : consensus_2835#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [AGGATGCGAAAGGGACGAGATACAATAGATGTTGATATGACTGCGGTAAACGAATCGATGCGTTGTACCAACAAACTAAACTAGATTGATGTTTGAAAGAGTGTTTGACCAATTGGTCATGATCATGAATGTAACTGGAATCGATTGCCTTTAAAAAACAACGCACCGAATAGTGCACAGCCAATAGCTCTCCAGGAGCAGCATTCTTCTTCTGCGTGTGTCGCTTCCAAGAATGGCATAATAGTGCGGCCCAGCCAAAGAGAAAATGGACATGAAATGATGAAAAACAAAAAGGAATCAATTTTACACACTGCATAACACGCTGCGTAAGTGCATCGTGGTATCGATGGCAACAGAAAAAAAGCCATCCCCCTCCCTCCCCCCCATACTGAAGTAAATACACATGAATGAATACTTGCATTTCAATGAATAAGTAAAACAATCAAAACCGACGAGCTCTTGTTTAGTTTCATATCGAAGAAGTAAGACTAGGCGCGATAATAAAAAAAAGACAAGAAACGAATGTGAGAATAGCAGTGAGTGGTGTATAAAATGACCAAACGTCCTCCAGCTAATTAGAAACACAGACACAAGCGTCACATTGCAAAAGAGAAAACAAAGAAACGAT]

[+] EMBL BX626756             [AGGATGCGAAAGGGACGAGATACAATAGATGTTGATATGACTGCGGTAAACGAATCGATGCGTTGTACCAACAAACTAAACTAGATTGATGTTTGAAAGAGTGTTTGACCAATTGGTCATGATCATGAATGTAACTGGAATCGATTGCCTTTAAAAAACAACGCACCGAATAGTGCACAGCCAATAGCTCTCCAGGAGCAGCATTCTTCTTCTGCGTGTGTCGCTTCCAAGAATGGCATAATAGTGCGGCCCAGCCAAAGAGAAAATGGACATGAAATGATGAAAAACAAAAAGGAATCAATTTTACACACTGCATAACACGCTGCGTAAGTGCATCGTGGTATCGATGGCAACAGAAAAAAAGCCATCCCCCTCCCTCCCCCCCATACTGAAGTAAATACACATGAATGAATACTTGCATTTCAATGAATAAGTAAAACAATCAAAACCGACGAGCTCTTGTTTAGTTTCATATCGAAGAAGTAAGACTAGGCGCGATAATAAAAAAAAGACAAGAAACGAATGTGAGAATAGCAGTGAGTGGTGTATAAAATGACCAAACGTCCTCCAGCTAATTAGAAACACAGACACAAGCGTCACATTGCAAAAGAGAAAACAAAGAAACGAT]




>consensus_2835#0
AGGATGCGAAAGGGACGAGATACAATAGATGTTGATATGACTGCGGTAAACGAATCGATG
CGTTGTACCAACAAACTAAACTAGATTGATGTTTGAAAGAGTGTTTGACCAATTGGTCAT
GATCATGAATGTAACTGGAATCGATTGCCTTTAAAAAACAACGCACCGAATAGTGCACAG
CCAATAGCTCTCCAGGAGCAGCATTCTTCTTCTGCGTGTGTCGCTTCCAAGAATGGCATA
ATAGTGCGGCCCAGCCAAAGAGAAAATGGACATGAAATGATGAAAAACAAAAAGGAATCA
ATTTTACACACTGCATAACACGCTGCGTAAGTGCATCGTGGTATCGATGGCAACAGAAAA
AAAGCCATCCCCCTCCCTCCCCCCCATACTGAAGTAAATACACATGAATGAATACTTGCA
TTTCAATGAATAAGTAAAACAATCAAAACCGACGAGCTCTTGTTTAGTTTCATATCGAAG
AAGTAAGACTAGGCGCGATAATAAAAAAAAGACAAGAAACGAATGTGAGAATAGCAGTGA
GTGGTGTATAAAATGACCAAACGTCCTCCAGCTAATTAGAAACACAGACACAAGCGTCAC
ATTGCAAAAGAGAAAACAAAGAAACGAT

consensusID : consensus_2835#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [AGAATCGCCCGAGGTCGCGATATAAAAAAAAGACAAGAAACGAATGTGAGAATAGCAGTGAGTGGTGTATAAAATGACCAAACGTCCTCCAGCAAATTAGAAACACAGACACAAGCGTCACATTGCAAAAGAGAAAAACAAAGAAACGATGAAAAAACAGCACATAACAAGTGTAGAAATGAAGGGGGGAAAAAAACAAACAAAACATAGTCAATAAGTAAGAACTCTAAGTTGCTAGAGTTAAGGTTAGTAGGCAGTGTGCATATTGTAAAAAGTAGAGAACACACGAAACAGTAAACAATACCCTAAACGGGCGGTGATGGTGAGCGAAAGAATGAAAAAATAAGAATAAACAAAATAAAACAGAAAACAATACAAAAGAGAGCAACTTCTGGCATTAGCAGCCAATGAGGAAACGTAGTAATGAATACGGAATGGCATGAACAACGCTAAGCGTTGAAGTCTGATACGATGTTCGATGCTATCACTACTACGACTACTACTACTCCTACTACTACTATNTATTTACTATTATTACTGCTACTATTGCTACTACCACCAATACTATTACTACAATTACTTCAACTACTT]

[+] EMBL AL934738             [AGAATCGCCCGAGGTCGCGATATAAAAAAAAGACAAGAAACGAATGTGAGAATAGCAGTGAGTGGTGTATAAAATGACCAAACGTCCTCCAGCAAATTAGAAACACAGACACAAGCGTCACATTGCAAAAGAGAAAAACAAAGAAACGATGAAAAAACAGCACATAACAAGTGTAGAAATGAAGGGGGGAAAAAAACAAACAAAACATAGTCAATAAGTAAGAACTCTAAGTTGCTAGAGTTAAGGTTAGTAGGCAGTGTGCATATTGTAAAAAGTAGAGAACACACGAAACAGTAAACAATACCCTAAACGGGCGGTGATGGTGAGCGAAAGAATGAAAAAATAAGAATAAACAAAATAAAACAGAAAACAATACAAAAGAGAGCAACTTCTGGCATTAGCAGCCAATGAGGAAACGTAGTAATGAATACGGAATGGCATGAACAACGCTAAGCGTTGAAGTCTGATACGATGTTCGATGCTATCACTACTACGACTACTACTACTCCTACTACTACTATNTATTTACTATTATTACTGCTACTATTGCTACTACCACCAATACTATTACTACAATTACTTCAACTACTT]




>consensus_2835#1
AGAATCGCCCGAGGTCGCGATATAAAAAAAAGACAAGAAACGAATGTGAGAATAGCAGTG
AGTGGTGTATAAAATGACCAAACGTCCTCCAGCAAATTAGAAACACAGACACAAGCGTCA
CATTGCAAAAGAGAAAAACAAAGAAACGATGAAAAAACAGCACATAACAAGTGTAGAAAT
GAAGGGGGGAAAAAAACAAACAAAACATAGTCAATAAGTAAGAACTCTAAGTTGCTAGAG
TTAAGGTTAGTAGGCAGTGTGCATATTGTAAAAAGTAGAGAACACACGAAACAGTAAACA
ATACCCTAAACGGGCGGTGATGGTGAGCGAAAGAATGAAAAAATAAGAATAAACAAAATA
AAACAGAAAACAATACAAAAGAGAGCAACTTCTGGCATTAGCAGCCAATGAGGAAACGTA
GTAATGAATACGGAATGGCATGAACAACGCTAAGCGTTGAAGTCTGATACGATGTTCGAT
GCTATCACTACTACGACTACTACTACTCCTACTACTACTATNTATTTACTATTATTACTG
CTACTATTGCTACTACCACCAATACTATTACTACAATTACTTCAACTACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2835#0      -----------AGGATGCGAAAGGGACGAGATACAATAGATGTTGATATGACT-GCGGTA 48
consensus_2835#1      AGAATCGCCCGAGGTCGCGATATAAAAAAAAGACAAGAAACGAATGTGAGAATAGCAGTG 60
                                 ***  **** *   *  * * **** * * *    *  ** * ** ** 

consensus_2835#0      AACGAATCGATGCGTTGTACCAACAAACTAAACTAGATT-GATGTTTGAAAGAGTGTTTG 107
consensus_2835#1      AGTGG-TGTATAAAATGACCAAACGTCCTCCAGCAAATTAGAAACACAGACACAAGCGTC 119
                      *  *  *  **    **  * ***   **  *  * *** **       *     *  * 

consensus_2835#0      ACCAATTGGTCATGATCATGAATGTAACTG-GAATCGATTGCCTTTAAAAAACAACGCAC 166
consensus_2835#1      ACATTGCAAAAGAGAAAAACAAAGAAACGATGAAAAAACAGCACATAACAAGTGTAGAAA 179
                      **           **  *  ** * ***   ***   *  **   *** **     * * 

consensus_2835#0      CGAATAGTGCACAGCCAATAGCTCTCCAGGAGCAGCA--TTCTTCTTCTGCGTGTGTCGC 224
consensus_2835#1      TGAAGGGGGGAAAAAAACAAACAAAACATAGTCAATAAGTAAGAACTCTAAGT-TGCTAG 238
                       ***  * * * *   *  * *    **    **  *  *      ***  ** **    

consensus_2835#0      TTCCAAGAATGGCATAATAGTGCG-GCCCAGCCAAAGAGAAAATGGACATGAAATGATGA 283
consensus_2835#1      AGTTAAGGTTAGTA-GGCAGTGTGCATATTGTAAAAAGTAGAGAACACACGAAACAGTAA 297
                          ***  * * *    **** *      *  ***   * *    *** ****   * *

consensus_2835#0      AAAACA-----AAAAGGAATCAATTTTACAC-ACTGCATAACACGCTGCGTAAGTGCATC 337
consensus_2835#1      ACAATACCCTAAACGGGCGGTGATGGTGAGCGAAAGAATGAAAAAATAAGAATAAACAAA 357
                      * ** *     **  **     **  *   * *  * ** * *   *  * *    **  

consensus_2835#0      GTGGTATCGATGGCAACAGAAAAAAAGCCATCCCCCTCCCTCCCCCCCATACTGAAGTAA 397
consensus_2835#1      ATAAAACAGAAAACAATACAAAAGAGAGCAACTTCTGGCATTAGCA----GCCAATGAGG 413
                       *   *  **   *** * **** *   ** *  *   * *   *      *  * *   

consensus_2835#0      ATACACATGAATGAATACTTGCATTTCAATGAATAA-GTAAAACAATCAAAACCGACGAG 456
consensus_2835#1      AAACGTAGTAATGAATAC--GGAATGGCATGAACAACGCTAAGCGTTGAAGTCTGATACG 471
                      * **  *  *********  * * *   ***** ** *  ** *  * **  * **   *

consensus_2835#0      CTCTTGTTTAGTTTCATATCGAAGAAGTAAGACTAGGCGCGATAATAAAAAAAAGACAAG 516
consensus_2835#1      ATGTTCGATGCTATCACTACTACGAC-TACTACTACTCCTACTACTACTATNTATTTACT 530
                       * **   *  * ***   * * **  **  ****  *    ** **  *   *   *  

consensus_2835#0      AA-ACGAATGTGAGAATAGCAGTGAGTGGTGTATAAAATGACCAAACGTCCTCCAGCTAA 575
consensus_2835#1      ATTATTACTGCTACTATTGCTACTACCACCA-ATACTATTACTACAATTACTTCAACTAC 589
                      *  *  * **  *  ** **    *       ***  ** ** * *  * ** ** *** 

consensus_2835#0      TTAGAAACACAGACACAAGCGTCACATTGCAAAAGAGAAAACAAAGAAACGAT 628
consensus_2835#1      TT--------------------------------------------------- 591
                      **