cluster # 2836

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Anopheles gambiae
cluster # 2836 cluster # 2836 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2836#0 length = 637 sequences # 1

consensus_2836#1 length = 637 sequences # 1

consensusID : consensus_2836#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCTCACTTGCTCGGGGTGAAACGCGGCGTGAAACTGCTCAAAACCGTTCGACCAGCTAAGGATCAGGTGAAAAAGGATTTCCCGCAAAGTGGGACAGTGCGTGCCGGATCAATTATACATCTACTGCGCCGCTTTCCGCTGTCTTTCCGCATAGCAGCAACCCCAGTGTGTTGTCGGTGCGGTGTTCAAATCAATCGATAGCTTCGCGAAAGAGGAGGCGCTGGTTTTCAATGCCGCACGAACGAACACAGTAGTAGGCTGTGTGAGCGAAGAAAAAACTATTTTCCTGCGTTGAGGTGGCCACTGGAATACCAGCGGAGTGTGTACGTTTTTGCTCAAATTACAGACGAAATTAGCAGTATTGCAACAAGTGCTCGTACAATCGCTCGCTGTGCGGAGTTGTGATTTATTGTTTGTGACCTTGTCCATTCACGATAAGTGCTCCCGCGGGTCTCCGTTTGCAGCCGAGCGCCCCACCATCAACTGAATTGCGGTTGCGAATGATTATTAGCTAAATAAGTTCTATTTCAACCCTCCCGACAATTGTACGCTAACACCTAAAACCCAGCCGTTTGGCGGACAGTCGAATCATCCCTGGCAGAAGCGACCG]

[+] EMBL BM587775             [CCGCCCACGCGTCCGCCCACGCGTCCGGCTCACTTGCTCGGGGTGAAACGCGGCGTGAAACTGCTCAAAACCGTTCGACCAGCTAAGGATCAGGTGAAAAAGGATTTCCCGCAAAGTGGGACAGTGCGTGCCGGATCAATTATACATCTACTGCGCCGCTTTCCGCTGTCTTTCCGCATAGCAGCAACCCCAGTGTGTTGTCGGTGCGGTGTTCAAATCAATCGATAGCTTCGCGAAAGAGGAGGCGCTGGTTTTCAATGCCGCACGAACGAACACAGTAGTAGGCTGTGTGAGCGAAGAAAAAACTATTTTCCTGCGTTGAGGTGGCCACTGGAATACCAGCGGAGTGTGTACGTTTTTGCTCAAATTACAGACGAAATTAGCAGTATTGCAACAAGTGCTCGTACAATCGCTCGCTGTGCGGAGTTGTGATTTATTGTTTGTGACCTTGTCCATTCACGATAAGTGCTCCCGCGGGTCTCCGTTTGCAGCCGAGCGCCCCACCATCAACTGAATTGCGGTTGCGAATGATTATTAGCTAAATAAGTTCTATTTCAACCCTCCCGACAATTGTACGCTAACACCTAAAACCCAGCCGTTTGGCGGACAGTCGAATCATCCCTGGCAGAAGCGACCG]




>consensus_2836#0
CCGCCCACGCGTCCGCCCACGCGTCCGGCTCACTTGCTCGGGGTGAAACGCGGCGTGAAA
CTGCTCAAAACCGTTCGACCAGCTAAGGATCAGGTGAAAAAGGATTTCCCGCAAAGTGGG
ACAGTGCGTGCCGGATCAATTATACATCTACTGCGCCGCTTTCCGCTGTCTTTCCGCATA
GCAGCAACCCCAGTGTGTTGTCGGTGCGGTGTTCAAATCAATCGATAGCTTCGCGAAAGA
GGAGGCGCTGGTTTTCAATGCCGCACGAACGAACACAGTAGTAGGCTGTGTGAGCGAAGA
AAAAACTATTTTCCTGCGTTGAGGTGGCCACTGGAATACCAGCGGAGTGTGTACGTTTTT
GCTCAAATTACAGACGAAATTAGCAGTATTGCAACAAGTGCTCGTACAATCGCTCGCTGT
GCGGAGTTGTGATTTATTGTTTGTGACCTTGTCCATTCACGATAAGTGCTCCCGCGGGTC
TCCGTTTGCAGCCGAGCGCCCCACCATCAACTGAATTGCGGTTGCGAATGATTATTAGCT
AAATAAGTTCTATTTCAACCCTCCCGACAATTGTACGCTAACACCTAAAACCCAGCCGTT
TGGCGGACAGTCGAATCATCCCTGGCAGAAGCGACCG

consensusID : consensus_2836#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [CCGCGCAACTGCAACTGAGTTGGAATTCCTGCGGAACAGATACAAACAGCCCACACGAACGAAGCTCACTTGCTCGGGGTGAAACGCGGCGTGAAACTGCTCAAAACCGTTCGACCAGCTAAGGATCAGGTGAAAAAGGATTTCCCGCAAAGTGGGACAGTGCGTGCCGGATCAATTATACATCTACTGCGCCGCTTTCCGCTGTCTTTCCGCATAGCAGCAAACCCAGTGTGTTGTCGGTGCGGTGTTCAAATCAATCGATAGCTTCGCGAAAGAGGAGGCGCTGGTTTTCAATGCCGCACGAACGAACACAATAGTAGGCTGTGTGAGCGAAGAAAAAACTATTTTCCTGCGTTGAGGTGGCCACTGGAATACCAGCGGAGTGTGTACGTTTTTGCTCAAATTACAGACGAAATTAGCAGTATTGCAACAAGTGCTCGTACAATCGCTCGCTGTGCGGAGTTGTGATTTATTGTTTGTGACCTTGTCCATTCACGATAAGTGCTCCCGCGGGTCTCCGTTTGCAGCCGAGCGCCCCACCATCAACTGAATTGCGGTTGCGAATGATTATTAGCTAAATAAGTTCTATTTCAACCCTCCCGACAATTGTACGCTAACACCTAAAACCCAGCCGTTT]

[+] EMBL BM650386             [CCGCGCAACTGCAACTGAGTTGGAATTCCTGCGGAACAGATACAAACAGCCCACACGAACGAAGCTCACTTGCTCGGGGTGAAACGCGGCGTGAAACTGCTCAAAACCGTTCGACCAGCTAAGGATCAGGTGAAAAAGGATTTCCCGCAAAGTGGGACAGTGCGTGCCGGATCAATTATACATCTACTGCGCCGCTTTCCGCTGTCTTTCCGCATAGCAGCAAACCCAGTGTGTTGTCGGTGCGGTGTTCAAATCAATCGATAGCTTCGCGAAAGAGGAGGCGCTGGTTTTCAATGCCGCACGAACGAACACAATAGTAGGCTGTGTGAGCGAAGAAAAAACTATTTTCCTGCGTTGAGGTGGCCACTGGAATACCAGCGGAGTGTGTACGTTTTTGCTCAAATTACAGACGAAATTAGCAGTATTGCAACAAGTGCTCGTACAATCGCTCGCTGTGCGGAGTTGTGATTTATTGTTTGTGACCTTGTCCATTCACGATAAGTGCTCCCGCGGGTCTCCGTTTGCAGCCGAGCGCCCCACCATCAACTGAATTGCGGTTGCGAATGATTATTAGCTAAATAAGTTCTATTTCAACCCTCCCGACAATTGTACGCTAACACCTAAAACCCAGCCGTTT]




>consensus_2836#1
CCGCGCAACTGCAACTGAGTTGGAATTCCTGCGGAACAGATACAAACAGCCCACACGAAC
GAAGCTCACTTGCTCGGGGTGAAACGCGGCGTGAAACTGCTCAAAACCGTTCGACCAGCT
AAGGATCAGGTGAAAAAGGATTTCCCGCAAAGTGGGACAGTGCGTGCCGGATCAATTATA
CATCTACTGCGCCGCTTTCCGCTGTCTTTCCGCATAGCAGCAAACCCAGTGTGTTGTCGG
TGCGGTGTTCAAATCAATCGATAGCTTCGCGAAAGAGGAGGCGCTGGTTTTCAATGCCGC
ACGAACGAACACAATAGTAGGCTGTGTGAGCGAAGAAAAAACTATTTTCCTGCGTTGAGG
TGGCCACTGGAATACCAGCGGAGTGTGTACGTTTTTGCTCAAATTACAGACGAAATTAGC
AGTATTGCAACAAGTGCTCGTACAATCGCTCGCTGTGCGGAGTTGTGATTTATTGTTTGT
GACCTTGTCCATTCACGATAAGTGCTCCCGCGGGTCTCCGTTTGCAGCCGAGCGCCCCAC
CATCAACTGAATTGCGGTTGCGAATGATTATTAGCTAAATAAGTTCTATTTCAACCCTCC
CGACAATTGTACGCTAACACCTAAAACCCAGCCGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2836#0      -------------------------------CCGCCCACGCGT---CCGCCCACGCGTCC 26
consensus_2836#1      CCGCGCAACTGCAACTGAGTTGGAATTCCTGCGGAACAGATACAAACAGCCCACACGAAC 60
                                                     * *  **        * ****** **  *

consensus_2836#0      G--GCTCACTTGCTCGGGGTGAAACGCGGCGTGAAACTGCTCAAAACCGTTCGACCAGCT 84
consensus_2836#1      GAAGCTCACTTGCTCGGGGTGAAACGCGGCGTGAAACTGCTCAAAACCGTTCGACCAGCT 120
                      *  *********************************************************

consensus_2836#0      AAGGATCAGGTGAAAAAGGATTTCCCGCAAAGTGGGACAGTGCGTGCCGGATCAATTATA 144
consensus_2836#1      AAGGATCAGGTGAAAAAGGATTTCCCGCAAAGTGGGACAGTGCGTGCCGGATCAATTATA 180
                      ************************************************************

consensus_2836#0      CATCTACTGCGCCGCTTTCCGCTGTCTTTCCGCATAGCAGCAACCCCAGTGTGTTGTCGG 204
consensus_2836#1      CATCTACTGCGCCGCTTTCCGCTGTCTTTCCGCATAGCAGCAAACCCAGTGTGTTGTCGG 240
                      ******************************************* ****************

consensus_2836#0      TGCGGTGTTCAAATCAATCGATAGCTTCGCGAAAGAGGAGGCGCTGGTTTTCAATGCCGC 264
consensus_2836#1      TGCGGTGTTCAAATCAATCGATAGCTTCGCGAAAGAGGAGGCGCTGGTTTTCAATGCCGC 300
                      ************************************************************

consensus_2836#0      ACGAACGAACACAGTAGTAGGCTGTGTGAGCGAAGAAAAAACTATTTTCCTGCGTTGAGG 324
consensus_2836#1      ACGAACGAACACAATAGTAGGCTGTGTGAGCGAAGAAAAAACTATTTTCCTGCGTTGAGG 360
                      ************* **********************************************

consensus_2836#0      TGGCCACTGGAATACCAGCGGAGTGTGTACGTTTTTGCTCAAATTACAGACGAAATTAGC 384
consensus_2836#1      TGGCCACTGGAATACCAGCGGAGTGTGTACGTTTTTGCTCAAATTACAGACGAAATTAGC 420
                      ************************************************************

consensus_2836#0      AGTATTGCAACAAGTGCTCGTACAATCGCTCGCTGTGCGGAGTTGTGATTTATTGTTTGT 444
consensus_2836#1      AGTATTGCAACAAGTGCTCGTACAATCGCTCGCTGTGCGGAGTTGTGATTTATTGTTTGT 480
                      ************************************************************

consensus_2836#0      GACCTTGTCCATTCACGATAAGTGCTCCCGCGGGTCTCCGTTTGCAGCCGAGCGCCCCAC 504
consensus_2836#1      GACCTTGTCCATTCACGATAAGTGCTCCCGCGGGTCTCCGTTTGCAGCCGAGCGCCCCAC 540
                      ************************************************************

consensus_2836#0      CATCAACTGAATTGCGGTTGCGAATGATTATTAGCTAAATAAGTTCTATTTCAACCCTCC 564
consensus_2836#1      CATCAACTGAATTGCGGTTGCGAATGATTATTAGCTAAATAAGTTCTATTTCAACCCTCC 600
                      ************************************************************

consensus_2836#0      CGACAATTGTACGCTAACACCTAAAACCCAGCCGTTTGGCGGACAGTCGAATCATCCCTG 624
consensus_2836#1      CGACAATTGTACGCTAACACCTAAAACCCAGCCGTTT----------------------- 637
                      *************************************                       

consensus_2836#0      GCAGAAGCGACCG 637
consensus_2836#1      -------------