cluster # 2844

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Anopheles gambiae
cluster # 2844 cluster # 2844 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2844#0 length = 680 sequences # 1

consensus_2844#1 length = 657 sequences # 1

consensusID : consensus_2844#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence

                              [TCTCACCTGGACCTGGTCGCTGGCGTGCGAGATGCAATACTACATGCTCTTCACCGTGCTGCTCTTCGTTTACGCCAAGAGTGCCAAGTTCGGCAAGAAGGTGTTTGGTGCGTTTGCGATCGGCACGCTGCTCTTCAACATTGCGCTAACGCTGAACCATCGCTTCATTCCGTCGTACGACGTGCTGTACAACACGGGTGATGCCCTGTACACGGCGCCCTGGTCTCGAGTGTCTCCGTACGTGGTCGGGGTCTACTTTGGATGGCTGATGGCGTCCAGCCGCGATAAGTTCACCATCACACAGAACCAATACCGATGGTACTGGCTGTTGGCCTGCTTCTGTGTGATCTTCAGCATGCATTCCACGATCAAGCGCAACTTCCCGTTCCCGATTGCCTCGACCGTCATGGTGGCCGTACGGTGGCTGATCTCATGGGCTGCCTGCTGGGTGATCCTCGCCACCGGATGCGGTTACTCAAACATTGTAACGCGTGTGCTTTCTTCCAAATTCTTCGTCCACATCAACAAGCTGACGTACGGAATCTACCTTCTCAACCCGCTGATTATCATCGTCACCTTTGGCGTGTCGGACTCCAGTGTCCACGCCGACCCTATACCAGCGGTAAGCTACTTTTAACCTCCATCTTTTTCTTCTTCCTTTCACCGTCTAACGCTTTCTA]

[+] EMBL BX623238             [TCTCACCTGGACCTGGTCGCTGGCGTGCGAGATGCAATACTACATGCTCTTCACCGTGCTGCTCTTCGTTTACGCCAAGAGTGCCAAGTTCGGCAAGAAGGTGTTTGGTGCGTTTGCGATCGGCACGCTGCTCTTCAACATTGCGCTAACGCTGAACCATCGCTTCATTCCGTCGTACGACGTGCTGTACAACACGGGTGATGCCCTGTACACGGCGCCCTGGTCTCGAGTGTCTCCGTACGTGGTCGGGGTCTACTTTGGATGGCTGATGGCGTCCAGCCGCGATAAGTTCACCATCACACAGAACCAATACCGATGGTACTGGCTGTTGGCCTGCTTCTGTGTGATCTTCAGCATGCATTCCACGATCAAGCGCAACTTCCCGTTCCCGATTGCCTCGACCGTCATGGTGGCCGTACGGTGGCTGATCTCATGGGCTGCCTGCTGGGTGATCCTCGCCACCGGATGCGGTTACTCAAACATTGTAACGCGTGTGCTTTCTTCCAAATTCTTCGTCCACATCAACAAGCTGACGTACGGAATCTACCTTCTCAACCCGCTGATTATCATCGTCACCTTTGGCGTGTCGGACTCCAGTGTCCACGCCGACCCTATACCAGCGGTAAGCTACTTTTAACCTCCATCTTTTTCTTCTTCCTTTCACCGTCTAACGCTTTCTA]




>consensus_2844#0
TCTCACCTGGACCTGGTCGCTGGCGTGCGAGATGCAATACTACATGCTCTTCACCGTGCT
GCTCTTCGTTTACGCCAAGAGTGCCAAGTTCGGCAAGAAGGTGTTTGGTGCGTTTGCGAT
CGGCACGCTGCTCTTCAACATTGCGCTAACGCTGAACCATCGCTTCATTCCGTCGTACGA
CGTGCTGTACAACACGGGTGATGCCCTGTACACGGCGCCCTGGTCTCGAGTGTCTCCGTA
CGTGGTCGGGGTCTACTTTGGATGGCTGATGGCGTCCAGCCGCGATAAGTTCACCATCAC
ACAGAACCAATACCGATGGTACTGGCTGTTGGCCTGCTTCTGTGTGATCTTCAGCATGCA
TTCCACGATCAAGCGCAACTTCCCGTTCCCGATTGCCTCGACCGTCATGGTGGCCGTACG
GTGGCTGATCTCATGGGCTGCCTGCTGGGTGATCCTCGCCACCGGATGCGGTTACTCAAA
CATTGTAACGCGTGTGCTTTCTTCCAAATTCTTCGTCCACATCAACAAGCTGACGTACGG
AATCTACCTTCTCAACCCGCTGATTATCATCGTCACCTTTGGCGTGTCGGACTCCAGTGT
CCACGCCGACCCTATACCAGCGGTAAGCTACTTTTAACCTCCATCTTTTTCTTCTTCCTT
TCACCGTCTAACGCTTTCTA

consensusID : consensus_2844#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence

                              [CGGTTACTCAAACATTGTAACGCGTGTGCTTTCTTCCAAATTCTTCGTCCACATCAACAAGCTGACGTACGGAATCTACCTTCTCAACCCGCTGATTATCATCGTCACCTTTGGCGTGTCGGACTCCAGTGTCCACGCCGACCCTATACCAGCGATCGTAATGGCGTTCGGTGTAACGCTGCTTTCCTACATGGCAGCGATCGTGTTTTCCGCCTGCTTCGAGATACCGTACTGTAGGATCTCGAGCGAGATCTTAAAGCTCAACCGCAAGGTCCCGCCCACCATCCCGCAACCAGCTCCGACGAAAACGACCGATTCCACCCACCACCCGCCACCACTGGTCCACCCGGTTTCGATCGAGAGCGAACGAAAGATTCAGTGATGTTCGAAATGCAGGGATGCCAGTGTGTGTCTGTGTGTGTCTGTGTGTGTAAATGTTGGGCTTTTAACAGTGAATACGCTAAGTGGACCCTTTTCCCAGCTGGCAAGGAGGAGATGGAGACGCTAAGATTGGATGGTGGGGGTAGCATCCCATGGGGGTGCATCGTATCGAACATGTCTTAATTTTTCCCCCCAACTTTCCCGTCTTTCTGGCGCACCTCCTTCGAGCACGTGGGGAGAGAGGAGCCGTCTCGCGTGGACCTCGGCTCGGTTGGC]

[+] EMBL BX625910             [CGGTTACTCAAACATTGTAACGCGTGTGCTTTCTTCCAAATTCTTCGTCCACATCAACAAGCTGACGTACGGAATCTACCTTCTCAACCCGCTGATTATCATCGTCACCTTTGGCGTGTCGGACTCCAGTGTCCACGCCGACCCTATACCAGCGATCGTAATGGCGTTCGGTGTAACGCTGCTTTCCTACATGGCAGCGATCGTGTTTTCCGCCTGCTTCGAGATACCGTACTGTAGGATCTCGAGCGAGATCTTAAAGCTCAACCGCAAGGTCCCGCCCACCATCCCGCAACCAGCTCCGACGAAAACGACCGATTCCACCCACCACCCGCCACCACTGGTCCACCCGGTTTCGATCGAGAGCGAACGAAAGATTCAGTGATGTTCGAAATGCAGGGATGCCAGTGTGTGTCTGTGTGTGTCTGTGTGTGTAAATGTTGGGCTTTTAACAGTGAATACGCTAAGTGGACCCTTTTCCCAGCTGGCAAGGAGGAGATGGAGACGCTAAGATTGGATGGTGGGGGTAGCATCCCATGGGGGTGCATCGTATCGAACATGTCTTAATTTTTCCCCCCAACTTTCCCGTCTTTCTGGCGCACCTCCTTCGAGCACGTGGGGAGAGAGGAGCCGTCTCGCGTGGACCTCGGCTCGGTTGGC]




>consensus_2844#1
CGGTTACTCAAACATTGTAACGCGTGTGCTTTCTTCCAAATTCTTCGTCCACATCAACAA
GCTGACGTACGGAATCTACCTTCTCAACCCGCTGATTATCATCGTCACCTTTGGCGTGTC
GGACTCCAGTGTCCACGCCGACCCTATACCAGCGATCGTAATGGCGTTCGGTGTAACGCT
GCTTTCCTACATGGCAGCGATCGTGTTTTCCGCCTGCTTCGAGATACCGTACTGTAGGAT
CTCGAGCGAGATCTTAAAGCTCAACCGCAAGGTCCCGCCCACCATCCCGCAACCAGCTCC
GACGAAAACGACCGATTCCACCCACCACCCGCCACCACTGGTCCACCCGGTTTCGATCGA
GAGCGAACGAAAGATTCAGTGATGTTCGAAATGCAGGGATGCCAGTGTGTGTCTGTGTGT
GTCTGTGTGTGTAAATGTTGGGCTTTTAACAGTGAATACGCTAAGTGGACCCTTTTCCCA
GCTGGCAAGGAGGAGATGGAGACGCTAAGATTGGATGGTGGGGGTAGCATCCCATGGGGG
TGCATCGTATCGAACATGTCTTAATTTTTCCCCCCAACTTTCCCGTCTTTCTGGCGCACC
TCCTTCGAGCACGTGGGGAGAGAGGAGCCGTCTCGCGTGGACCTCGGCTCGGTTGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2844#0      TCTCACCTGGACCTGGTCGCTGGCGTGCGAGATGCAATACTACATGCTCTTCACCGTGCT 60
consensus_2844#1      -----CGGTTACTCAAACATTGTAACGCGTG-TGCTTTCTTCCAAATTCTTCGTC-CACA 53
                           *    **     *  **    *** * ***  *  * **   *****  *   * 

consensus_2844#0      GCTCTTCGTTTACGCCAAGAGTGCCAAGTTCGGCAAGAAGGTGTTTGGTGCGTTTGCGAT 120
consensus_2844#1      TCAACAAGCTGACGTACGGAAT--CTACCTTCTCAACCCGCTGATTATCATCGTCACCTT 111
                       *     * * ***    ** *  * *  *   ***   * ** **       *  *  *

consensus_2844#0      CGGCACGCTGCTCTTCAACATT-GCGCTAACGCTGAACCATCGCTTCATTCCGTCGTACG 179
consensus_2844#1      TGGCGTGTCGGACTCCAGTGTCCACGCCGACCCTATACCAGCGAT------CGT--AATG 163
                       ***  *  *  ** **   *   ***  ** **  **** ** *      ***   * *

consensus_2844#0      ACGTGCTGTACAACACGGGTGATGCCCTGTACA-CGGCGCCCTGGTCT--CGAGTGTCTC 236
consensus_2844#1      GCGTTCGGTGTAACGC---TGCTTTCCTACATGGCAGCGATCGTGTTTTCCGCCTGCTTC 220
                       *** * **  *** *   ** *  ***  *   * ***  *  ** *  **  **  **

consensus_2844#0      CGTACGTGGTCGGGGTCTACTTTGGATG-GCTGATGGCGTCCAGCCGCGATAAGTTCACC 295
consensus_2844#1      GAGATACCGTACTGTAGGATCTCGAGCGAGATCTTAAAGCTCAACCGCAAGGTCCCGCCC 280
                         *    **   *    *  * *   * * *  *   *  ** **** *        **

consensus_2844#0      ATCACACAG-AACCAATACCGATGGTACTGGCTG--TTGGCCTGCTTCTGTGTGATCTTC 352
consensus_2844#1      ACCATCCCGCAACCAGCTCCGACGAAAACGACCGATTCCACCCACCACC-CGCCACCACT 339
                      * **  * * *****   **** *  *  * * *  *   **  *  *   *  * *   

consensus_2844#0      AGCATGCATT-CCACGATCAAGCGCAACTTCCCGTTCCCGATTGCCTCGACCGTCATGGT 411
consensus_2844#1      GGTCCACCCGGTTTCGATCGAGAGCGAACGAAAGATTCAGTGATGTTCGAAATGCAGGGA 399
                       *    *       ***** ** ** *      * * * *      ****    ** ** 

consensus_2844#0      GGCCGTACGGTGGCTGATCTCATGGGC-TGCCTGCTGGGTGATCCTC-GCCACCGGATGC 469
consensus_2844#1      TGCCAGTGTGTGTCTGTGTGTGTCTGTGTGTGTAAATGTTGGGCTTTTAACAGTGAATAC 459
                       ***     *** ***      *  *  **  *    * **  * *    **  * ** *

consensus_2844#0      GGTTACTCAAACATTGTAACGCGTGT----GCTTTCTTCCAAATTCTTCGTCCACATCAA 525
consensus_2844#1      GCTAAGTGGACCCTTTTCCCAGCTGGCAAGGAGGAGATGGAGACGCTAAGATTGGATGGT 519
                      * * * *  * * ** *  *   **     *      *  * *  **  *     **   

consensus_2844#0      CAAGCTGACGTAC----GGAATCTACCTTCTCAACC---CGCTGATTATCATCGTCACCT 578
consensus_2844#1      GGGGGTAGCATCCCATGGGGGTGCATCGTATCGAACATGTCTTAATTTTTCCCCCCAACT 579
                         * *  * * *    **  *  * * * ** * *      * *** *   *  ** **

consensus_2844#0      TTGGCGTGTCGGACTCCAGTGTCCACGCCGACCCTATACCAGCGGTAAGCTACTTTTAAC 638
consensus_2844#1      TT--CCCGTCTTTCTGGCGCACCTCCTTCGAGCACGTGG-GGAGAGAGGAGCCGTCTCGC 636
                      **  *  ***   **   *   *  *  *** *   *    * *  * *   * * *  *

consensus_2844#0      CTCCATCTTTTTCTTCTTCCTTTCACCGTCTAACGCTTTCTA 680
consensus_2844#1      GTGGACCTCGGCTCGGTTGGC--------------------- 657
                       *  * **        **