cluster # 2857

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Anopheles gambiae
cluster # 2857 cluster # 2857 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2857#0 length = 654 sequences # 1

consensus_2857#1 length = 516 sequences # 1

consensusID : consensus_2857#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [GGCAGAATCGGNCACGAGGTACGCTGTTGCTTTGCACGTGCTTCGCAAGTGTTGCTCCGAAATGTTTAAATTTTCTTTCCAAGTAGAGCCGGAAGATGAATCGCCATCAACCACATCGAAGGATGAGAAAGCGAAACCAGAATCCAGCACAGAGGAGAGCAAATCAACTGTGAAGGGAGACAGTGATGTGTACCCTTGCGAGGAACTTGATTTTTGAGTCCTTACAATCCAAACAAAACTGCCGTCAAATCCGGAAGTAAACGAGTAGCTTTACACCGGGAGCAGAGCTAGCGATCGATTACCTTAACCATCTTGCCCTCCTGGATGAAACCTTCACGGACGATATCGTGACGGCCGAAACGGACCACATCGGACCTGATACCGAACCGGTACGAGGGTGGGCTGAAGGTGTGGGAATGTACGTACGATTTAGGGAGAGTTTTNATCCGCATGCGAGGAAAGGCGGGCCGAGTTTGGCGGGAAGAAGGTGCTGGGATCTTGGCTGTGGTGCAGGCCTGCTCGGTATCGAGGCACTGCTGCTGGGCGCCAGCTGTGTACACGTTTCAGGATTACAACAAGGATGTACTGACGAAGCTACGATGGTCAACTACGACCTTAACTGTCGGCTCGGTCAACGGAAAGCGACGAGTCGAA]

[+] EMBL BX468694             [GGCAGAATCGGNCACGAGGTACGCTGTTGCTTTGCACGTGCTTCGCAAGTGTTGCTCCGAAATGTTTAAATTTTCTTTCCAAGTAGAGCCGGAAGATGAATCGCCATCAACCACATCGAAGGATGAGAAAGCGAAACCAGAATCCAGCACAGAGGAGAGCAAATCAACTGTGAAGGGAGACAGTGATGTGTACCCTTGCGAGGAACTTGATTTTTGAGTCCTTACAATCCAAACAAAACTGCCGTCAAATCCGGAAGTAAACGAGTAGCTTTACACCGGGAGCAGAGCTAGCGATCGATTACCTTAACCATCTTGCCCTCCTGGATGAAACCTTCACGGACGATATCGTGACGGCCGAAACGGACCACATCGGACCTGATACCGAACCGGTACGAGGGTGGGCTGAAGGTGTGGGAATGTACGTACGATTTAGGGAGAGTTTTNATCCGCATGCGAGGAAAGGCGGGCCGAGTTTGGCGGGAAGAAGGTGCTGGGATCTTGGCTGTGGTGCAGGCCTGCTCGGTATCGAGGCACTGCTGCTGGGCGCCAGCTGTGTACACGTTTCAGGATTACAACAAGGATGTACTGACGAAGCTACGATGGTCAACTACGACCTTAACTGTCGGCTCGGTCAACGGAAAGCGACGAGTCGAA]




>consensus_2857#0
GGCAGAATCGGNCACGAGGTACGCTGTTGCTTTGCACGTGCTTCGCAAGTGTTGCTCCGA
AATGTTTAAATTTTCTTTCCAAGTAGAGCCGGAAGATGAATCGCCATCAACCACATCGAA
GGATGAGAAAGCGAAACCAGAATCCAGCACAGAGGAGAGCAAATCAACTGTGAAGGGAGA
CAGTGATGTGTACCCTTGCGAGGAACTTGATTTTTGAGTCCTTACAATCCAAACAAAACT
GCCGTCAAATCCGGAAGTAAACGAGTAGCTTTACACCGGGAGCAGAGCTAGCGATCGATT
ACCTTAACCATCTTGCCCTCCTGGATGAAACCTTCACGGACGATATCGTGACGGCCGAAA
CGGACCACATCGGACCTGATACCGAACCGGTACGAGGGTGGGCTGAAGGTGTGGGAATGT
ACGTACGATTTAGGGAGAGTTTTNATCCGCATGCGAGGAAAGGCGGGCCGAGTTTGGCGG
GAAGAAGGTGCTGGGATCTTGGCTGTGGTGCAGGCCTGCTCGGTATCGAGGCACTGCTGC
TGGGCGCCAGCTGTGTACACGTTTCAGGATTACAACAAGGATGTACTGACGAAGCTACGA
TGGTCAACTACGACCTTAACTGTCGGCTCGGTCAACGGAAAGCGACGAGTCGAA

consensusID : consensus_2857#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [ATTGCCCGAGGNNCTCTCAATCACCGCTGTTGCTTTGCACGTGCTTCGCAAGTGTTGCTCCGAAATGTTTAAATTTTCTTTCCAAGTAGAGCCGGAAGATGAATCGCCATCAACCACATCGAAGGATGAGAAAGCGAAACCAGAATCCAGCACAGAGGAGAGCAAATCAACTGTGAAGGGAGACAGTGATGTGTACCCTTGGCGAGGAACTTGATTTTGAGTCCTTACAATCCAACAAAACTGNCGTCAATCCGGAAGTAACGAGTAGCTTTACACCGGGAGCAGAGCTAGCGATCGATTACCTTAACCATCTTGCCCTCCTGGATGAAACCTTCACGGACGATATCGTGACGGCCGAAACGGACCACTCGGACCTGATACCGAACCGGTACGAGGGTGGGCTGAAGGTGTGGGAATGTACGTACGATTTGGGAGAGTTTTTATCCGCATGCGAGGAAAGGCGGGCCGAGTTTGGCGGGAAGAAGGTGCTGGATCTTGGCTGTGGTGCAGGCCTGC]

[+] EMBL AL932222             [ATTGCCCGAGGNNCTCTCAATCACCGCTGTTGCTTTGCACGTGCTTCGCAAGTGTTGCTCCGAAATGTTTAAATTTTCTTTCCAAGTAGAGCCGGAAGATGAATCGCCATCAACCACATCGAAGGATGAGAAAGCGAAACCAGAATCCAGCACAGAGGAGAGCAAATCAACTGTGAAGGGAGACAGTGATGTGTACCCTTGGCGAGGAACTTGATTTTGAGTCCTTACAATCCAACAAAACTGNCGTCAATCCGGAAGTAACGAGTAGCTTTACACCGGGAGCAGAGCTAGCGATCGATTACCTTAACCATCTTGCCCTCCTGGATGAAACCTTCACGGACGATATCGTGACGGCCGAAACGGACCACTCGGACCTGATACCGAACCGGTACGAGGGTGGGCTGAAGGTGTGGGAATGTACGTACGATTTGGGAGAGTTTTTATCCGCATGCGAGGAAAGGCGGGCCGAGTTTGGCGGGAAGAAGGTGCTGGATCTTGGCTGTGGTGCAGGCCTGC]




>consensus_2857#1
ATTGCCCGAGGNNCTCTCAATCACCGCTGTTGCTTTGCACGTGCTTCGCAAGTGTTGCTC
CGAAATGTTTAAATTTTCTTTCCAAGTAGAGCCGGAAGATGAATCGCCATCAACCACATC
GAAGGATGAGAAAGCGAAACCAGAATCCAGCACAGAGGAGAGCAAATCAACTGTGAAGGG
AGACAGTGATGTGTACCCTTGGCGAGGAACTTGATTTTGAGTCCTTACAATCCAACAAAA
CTGNCGTCAATCCGGAAGTAACGAGTAGCTTTACACCGGGAGCAGAGCTAGCGATCGATT
ACCTTAACCATCTTGCCCTCCTGGATGAAACCTTCACGGACGATATCGTGACGGCCGAAA
CGGACCACTCGGACCTGATACCGAACCGGTACGAGGGTGGGCTGAAGGTGTGGGAATGTA
CGTACGATTTGGGAGAGTTTTTATCCGCATGCGAGGAAAGGCGGGCCGAGTTTGGCGGGA
AGAAGGTGCTGGATCTTGGCTGTGGTGCAGGCCTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2857#0      ---GGCAGAATCGGNCACGAGGTACGCTGTTGCTTTGCACGTGCTTCGCAAGTGTTGCTC 57
consensus_2857#1      ATTGCCCGAGGNNCTCTCAATCACCGCTGTTGCTTTGCACGTGCTTCGCAAGTGTTGCTC 60
                         * * **      * * *    ************************************

consensus_2857#0      CGAAATGTTTAAATTTTCTTTCCAAGTAGAGCCGGAAGATGAATCGCCATCAACCACATC 117
consensus_2857#1      CGAAATGTTTAAATTTTCTTTCCAAGTAGAGCCGGAAGATGAATCGCCATCAACCACATC 120
                      ************************************************************

consensus_2857#0      GAAGGATGAGAAAGCGAAACCAGAATCCAGCACAGAGGAGAGCAAATCAACTGTGAAGGG 177
consensus_2857#1      GAAGGATGAGAAAGCGAAACCAGAATCCAGCACAGAGGAGAGCAAATCAACTGTGAAGGG 180
                      ************************************************************

consensus_2857#0      AGACAGTGATGTGTACCCTTG-CGAGGAACTTGATTTTTGAGTCCTTACAATCCAAACAA 236
consensus_2857#1      AGACAGTGATGTGTACCCTTGGCGAGGAACTTGATTTT-GAGTCCTTACAATCCAA-CAA 238
                      ********************* **************** ***************** ***

consensus_2857#0      AACTGCCGTCAAATCCGGAAGTAAACGAGTAGCTTTACACCGGGAGCAGAGCTAGCGATC 296
consensus_2857#1      AACTGNCGTCAA-TCCGGAAGTAA-CGAGTAGCTTTACACCGGGAGCAGAGCTAGCGATC 296
                      ***** ****** *********** ***********************************

consensus_2857#0      GATTACCTTAACCATCTTGCCCTCCTGGATGAAACCTTCACGGACGATATCGTGACGGCC 356
consensus_2857#1      GATTACCTTAACCATCTTGCCCTCCTGGATGAAACCTTCACGGACGATATCGTGACGGCC 356
                      ************************************************************

consensus_2857#0      GAAACGGACCACATCGGACCTGATACCGAACCGGTACGAGGGTGGGCTGAAGGTGTGGGA 416
consensus_2857#1      GAAACGGACCAC-TCGGACCTGATACCGAACCGGTACGAGGGTGGGCTGAAGGTGTGGGA 415
                      ************ ***********************************************

consensus_2857#0      ATGTACGTACGATTTAGGGAGAGTTTTNATCCGCATGCGAGGAAAGGCGGGCCGAGTTTG 476
consensus_2857#1      ATGTACGTACGATTT-GGGAGAGTTTTTATCCGCATGCGAGGAAAGGCGGGCCGAGTTTG 474
                      *************** *********** ********************************

consensus_2857#0      GCGGGAAGAAGGTGCTGGGATCTTGGCTGTGGTGCAGGCCTGCTCGGTATCGAGGCACTG 536
consensus_2857#1      GCGGGAAGAAGGTGCTGG-ATCTTGGCTGTGGTGCAGGCCTGC----------------- 516
                      ****************** ************************                 

consensus_2857#0      CTGCTGGGCGCCAGCTGTGTACACGTTTCAGGATTACAACAAGGATGTACTGACGAAGCT 596
consensus_2857#1      ------------------------------------------------------------
                                                                                  

consensus_2857#0      ACGATGGTCAACTACGACCTTAACTGTCGGCTCGGTCAACGGAAAGCGACGAGTCGAA 654
consensus_2857#1      ----------------------------------------------------------