cluster # 2864

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Anopheles gambiae
cluster # 2864 cluster # 2864 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2864#0 length = 949 sequences # 1

consensus_2864#1 length = 677 sequences # 1

consensusID : consensus_2864#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 949
fasta sequence

                              [GCCCGAGGTTGAATCCTAGTACTTTCGGCAAGAATCTAAATTTAAAACGTTTTCAATCAAATTAACATACGAAAATTCGGTCAAGAGCAAACACATTCAGGTGCAATGCCGGCTGTAAAAATCGTGTTGAAATTGCTTTGTCAAAATGTCGACAGTGGGCACCAGTGTCAGGTGAATCTTCGGCGTTCAATTTACGAAATTGACTCGGAAATCGAAGAAATTAAGCTGCCCTTGCAAGCGATCGTAAAGCTGAAACGTATCCATCAGCCACAAGATTTGCAATCATCCTCGATGCTTCCAATGCACCAACAGGCTCAGCTTAGTCTTGCCCGTCATGTCGAAGGTTGCTCTAATGGGCGAGAGAGAAGCTTACGGCTACGACGGGAGAGGTTCAAGAAGGTACGATGACGATGGGCGCAGATCGACCACGATCAAAGTTCGCAACATCAACGTGTCAACAGCATGGTGGCGTCAAAAACACAGTCGGTCACAANGAGGANATTCAACNGAAATACACNNCTATGTTCGCCTGGCNCGCTGNACGGANACACTGATGGCCAAAGGCAGTGCCATCCCGGCTCATTGGCTTGACTNACAGANCCGCCCNGCTTGNTTGCANACAAAGGGAACACAATGGGCTNACCAAGTTACCGGCGTAACGTGCCGAAAACGAGCCTTTAAACCCGNACGNGTCCTTGAACGGGCACACCATCTAACCNGGCCCCACCGGAGNAAAAACACCNTACACCCTGGTCCCCAACTCTGGGTGGCACGCTACGCNTTCCCCTGGGGCCNAACAGAGNANCGAACNTGCTCCCCCACGAGAGGGCCCANCACAATCCCATANACAAAGCCCATGGCCCAAAAACCCTCACAGCACAANCATTGGCGCCCGCCACACCCGANGCGCGCANACACCACATTGGACCCCCCACTCACCAGGCACACA]

[+] EMBL AL931929             [GCCCGAGGTTGAATCCTAGTACTTTCGGCAAGAATCTAAATTTAAAACGTTTTCAATCAAATTAACATACGAAAATTCGGTCAAGAGCAAACACATTCAGGTGCAATGCCGGCTGTAAAAATCGTGTTGAAATTGCTTTGTCAAAATGTCGACAGTGGGCACCAGTGTCAGGTGAATCTTCGGCGTTCAATTTACGAAATTGACTCGGAAATCGAAGAAATTAAGCTGCCCTTGCAAGCGATCGTAAAGCTGAAACGTATCCATCAGCCACAAGATTTGCAATCATCCTCGATGCTTCCAATGCACCAACAGGCTCAGCTTAGTCTTGCCCGTCATGTCGAAGGTTGCTCTAATGGGCGAGAGAGAAGCTTACGGCTACGACGGGAGAGGTTCAAGAAGGTACGATGACGATGGGCGCAGATCGACCACGATCAAAGTTCGCAACATCAACGTGTCAACAGCATGGTGGCGTCAAAAACACAGTCGGTCACAANGAGGANATTCAACNGAAATACACNNCTATGTTCGCCTGGCNCGCTGNACGGANACACTGATGGCCAAAGGCAGTGCCATCCCGGCTCATTGGCTTGACTNACAGANCCGCCCNGCTTGNTTGCANACAAAGGGAACACAATGGGCTNACCAAGTTACCGGCGTAACGTGCCGAAAACGAGCCTTTAAACCCGNACGNGTCCTTGAACGGGCACACCATCTAACCNGGCCCCACCGGAGNAAAAACACCNTACACCCTGGTCCCCAACTCTGGGTGGCACGCTACGCNTTCCCCTGGGGCCNAACAGAGNANCGAACNTGCTCCCCCACGAGAGGGCCCANCACAATCCCATANACAAAGCCCATGGCCCAAAAACCCTCACAGCACAANCATTGGCGCCCGCCACACCCGANGCGCGCANACACCACATTGGACCCCCCACTCACCAGGCACACA]




>consensus_2864#0
GCCCGAGGTTGAATCCTAGTACTTTCGGCAAGAATCTAAATTTAAAACGTTTTCAATCAA
ATTAACATACGAAAATTCGGTCAAGAGCAAACACATTCAGGTGCAATGCCGGCTGTAAAA
ATCGTGTTGAAATTGCTTTGTCAAAATGTCGACAGTGGGCACCAGTGTCAGGTGAATCTT
CGGCGTTCAATTTACGAAATTGACTCGGAAATCGAAGAAATTAAGCTGCCCTTGCAAGCG
ATCGTAAAGCTGAAACGTATCCATCAGCCACAAGATTTGCAATCATCCTCGATGCTTCCA
ATGCACCAACAGGCTCAGCTTAGTCTTGCCCGTCATGTCGAAGGTTGCTCTAATGGGCGA
GAGAGAAGCTTACGGCTACGACGGGAGAGGTTCAAGAAGGTACGATGACGATGGGCGCAG
ATCGACCACGATCAAAGTTCGCAACATCAACGTGTCAACAGCATGGTGGCGTCAAAAACA
CAGTCGGTCACAANGAGGANATTCAACNGAAATACACNNCTATGTTCGCCTGGCNCGCTG
NACGGANACACTGATGGCCAAAGGCAGTGCCATCCCGGCTCATTGGCTTGACTNACAGAN
CCGCCCNGCTTGNTTGCANACAAAGGGAACACAATGGGCTNACCAAGTTACCGGCGTAAC
GTGCCGAAAACGAGCCTTTAAACCCGNACGNGTCCTTGAACGGGCACACCATCTAACCNG
GCCCCACCGGAGNAAAAACACCNTACACCCTGGTCCCCAACTCTGGGTGGCACGCTACGC
NTTCCCCTGGGGCCNAACAGAGNANCGAACNTGCTCCCCCACGAGAGGGCCCANCACAAT
CCCATANACAAAGCCCATGGCCCAAAAACCCTCACAGCACAANCATTGGCGCCCGCCACA
CCCGANGCGCGCANACACCACATTGGACCCCCCACTCACCAGGCACACA

consensusID : consensus_2864#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence

                              [CCGCTTGTTGGTTGGTTGGTCCAGGAATCCTAGTACTTTCGGCAAAGAATCTAAATTTAAAACGTTTTCAATCAAATTAACATACGAAAATTCGGTCAAGAGCAAACACATTCAAGTGCAATGCCGGCTGTAAAAATCGTGTTGAAATTGCTTTGTCAAAATGTCGACAGTGGGCACCAGTGTCAGGTGAATCTTCGGCGTTCAATTTACGAAATTGACTCGGAAATCGAAGAAATTAAGCTGCCCTTGCAAGCGATCGTAAAGCTGAAACGTATCCATCAGCCACAAGATTTGCAATCATCCTCGATGCTTCCAATGCACCAACAGGCCCAGCTTAGTCTGCCCGTCATGTCGAAGGTTGCTCTAATGGGCGAGAGAGAAGCGTACGGCTACGACGGGAGAGGTTCAAGAAGGTTCGATGACGATGGGCGCAGATCGACCACCATAAGAGTTCGCAAATCAAGCGTCAAAGATGGTGGCGTCAAAAAAAGTCGGTCGCAAGAGGAATTAAAAGAAATAAAAGCTATGTTGTTGGAAGTGAAGGAAAAACTGATGGCCAAAGGCAGTGCATCCGGCTCATTGGTTGACGAAGAACCGCCAGTTGTTGAAAAGGACAAATGGTTTACAAATTCGGTAGTGCGAAGGCTTAGCGAAGGTCTGAAGGAAATTAACGCCAC]

[+] EMBL BM579124             [CCGCTTGTTGGTTGGTTGGTCCAGGAATCCTAGTACTTTCGGCAAAGAATCTAAATTTAAAACGTTTTCAATCAAATTAACATACGAAAATTCGGTCAAGAGCAAACACATTCAAGTGCAATGCCGGCTGTAAAAATCGTGTTGAAATTGCTTTGTCAAAATGTCGACAGTGGGCACCAGTGTCAGGTGAATCTTCGGCGTTCAATTTACGAAATTGACTCGGAAATCGAAGAAATTAAGCTGCCCTTGCAAGCGATCGTAAAGCTGAAACGTATCCATCAGCCACAAGATTTGCAATCATCCTCGATGCTTCCAATGCACCAACAGGCCCAGCTTAGTCTGCCCGTCATGTCGAAGGTTGCTCTAATGGGCGAGAGAGAAGCGTACGGCTACGACGGGAGAGGTTCAAGAAGGTTCGATGACGATGGGCGCAGATCGACCACCATAAGAGTTCGCAAATCAAGCGTCAAAGATGGTGGCGTCAAAAAAAGTCGGTCGCAAGAGGAATTAAAAGAAATAAAAGCTATGTTGTTGGAAGTGAAGGAAAAACTGATGGCCAAAGGCAGTGCATCCGGCTCATTGGTTGACGAAGAACCGCCAGTTGTTGAAAAGGACAAATGGTTTACAAATTCGGTAGTGCGAAGGCTTAGCGAAGGTCTGAAGGAAATTAACGCCAC]




>consensus_2864#1
CCGCTTGTTGGTTGGTTGGTCCAGGAATCCTAGTACTTTCGGCAAAGAATCTAAATTTAA
AACGTTTTCAATCAAATTAACATACGAAAATTCGGTCAAGAGCAAACACATTCAAGTGCA
ATGCCGGCTGTAAAAATCGTGTTGAAATTGCTTTGTCAAAATGTCGACAGTGGGCACCAG
TGTCAGGTGAATCTTCGGCGTTCAATTTACGAAATTGACTCGGAAATCGAAGAAATTAAG
CTGCCCTTGCAAGCGATCGTAAAGCTGAAACGTATCCATCAGCCACAAGATTTGCAATCA
TCCTCGATGCTTCCAATGCACCAACAGGCCCAGCTTAGTCTGCCCGTCATGTCGAAGGTT
GCTCTAATGGGCGAGAGAGAAGCGTACGGCTACGACGGGAGAGGTTCAAGAAGGTTCGAT
GACGATGGGCGCAGATCGACCACCATAAGAGTTCGCAAATCAAGCGTCAAAGATGGTGGC
GTCAAAAAAAGTCGGTCGCAAGAGGAATTAAAAGAAATAAAAGCTATGTTGTTGGAAGTG
AAGGAAAAACTGATGGCCAAAGGCAGTGCATCCGGCTCATTGGTTGACGAAGAACCGCCA
GTTGTTGAAAAGGACAAATGGTTTACAAATTCGGTAGTGCGAAGGCTTAGCGAAGGTCTG
AAGGAAATTAACGCCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2864#0      --------------GCCCGAGGTTGAATCCTAGTACTTTCGGCAA-GAATCTAAATTTAA 45
consensus_2864#1      CCGCTTGTTGGTTGGTTGGTCCAGGAATCCTAGTACTTTCGGCAAAGAATCTAAATTTAA 60
                                    *   *     ********************* **************

consensus_2864#0      AACGTTTTCAATCAAATTAACATACGAAAATTCGGTCAAGAGCAAACACATTCAGGTGCA 105
consensus_2864#1      AACGTTTTCAATCAAATTAACATACGAAAATTCGGTCAAGAGCAAACACATTCAAGTGCA 120
                      ****************************************************** *****

consensus_2864#0      ATGCCGGCTGTAAAAATCGTGTTGAAATTGCTTTGTCAAAATGTCGACAGTGGGCACCAG 165
consensus_2864#1      ATGCCGGCTGTAAAAATCGTGTTGAAATTGCTTTGTCAAAATGTCGACAGTGGGCACCAG 180
                      ************************************************************

consensus_2864#0      TGTCAGGTGAATCTTCGGCGTTCAATTTACGAAATTGACTCGGAAATCGAAGAAATTAAG 225
consensus_2864#1      TGTCAGGTGAATCTTCGGCGTTCAATTTACGAAATTGACTCGGAAATCGAAGAAATTAAG 240
                      ************************************************************

consensus_2864#0      CTGCCCTTGCAAGCGATCGTAAAGCTGAAACGTATCCATCAGCCACAAGATTTGCAATCA 285
consensus_2864#1      CTGCCCTTGCAAGCGATCGTAAAGCTGAAACGTATCCATCAGCCACAAGATTTGCAATCA 300
                      ************************************************************

consensus_2864#0      TCCTCGATGCTTCCAATGCACCAACAGGCTCAGCTTAGTCTTGCCCGTCATGTCGAAGGT 345
consensus_2864#1      TCCTCGATGCTTCCAATGCACCAACAGGCCCAGCTTAGTCT-GCCCGTCATGTCGAAGGT 359
                      ***************************** *********** ******************

consensus_2864#0      TGCTCTAATGGGCGAGAGAGAAGCTTACGGCTACGACGGGAGAGGTTCAAGAAGGTACGA 405
consensus_2864#1      TGCTCTAATGGGCGAGAGAGAAGCGTACGGCTACGACGGGAGAGGTTCAAGAAGGTTCGA 419
                      ************************ ******************************* ***

consensus_2864#0      TGACGATGGGCGCAGATCGACCACGATCAAAGTTCGCAACATCAACGTGTCAACAGCATG 465
consensus_2864#1      TGACGATGGGCGCAGATCGACCACCATAAGAGTTCGCAA-ATCAA-GCGTCA--AAGATG 475
                      ************************ ** * ********* ***** * ****  *  ***

consensus_2864#0      GTGGCGTCAAAAACACAGTCGGTCACAANGAGGANATTCAACNGAAATACACNNCTATGT 525
consensus_2864#1      GTGGCGTCAAAAAA--AGTCGGTCGCAAGAGGAAT---TAAAAGAAATAAA-AGCTATGT 529
                      *************   ******** ***   * *     **  ****** *   ******

consensus_2864#0      TCGCCTGGCNCGCTGNACGGANACACTGATGGCCAAAGGCAGTGCCATCCCGGCTCATTG 585
consensus_2864#1      T-GTTGGAAGT----GAAGGAAAAACTGATGGCCAAAGGCAGTGCA--TCCGGCTCATTG 582
                      * *   *         * *** * *********************    ***********

consensus_2864#0      GCTTGACTNACAGANCCGCCCNGCTTGNTTGCANACAAAGGGAACACAATGGGCTNACCA 645
consensus_2864#1      G-TTGACGAA--GAACCGCC------AGTTGTTGAAAAGG-----ACAAATGGTTTACAA 628
                      * *****  *  ** *****        ***   * ** *     ****  ** * ** *

consensus_2864#0      AGTTACCGGCGTAACGTGCCGAAAACGAGCCTTTAAACCCGNACGNGTCCTTGAACGGGC 705
consensus_2864#1      ATTCGGTAGTGCGAAGGCTTAGCGAAGGTCTGAAGGAAATTAACGCCAC----------- 677
                      * *     * *  * *        * *  *      *     ***   *           

consensus_2864#0      ACACCATCTAACCNGGCCCCACCGGAGNAAAAACACCNTACACCCTGGTCCCCAACTCTG 765
consensus_2864#1      ------------------------------------------------------------
                                                                                  

consensus_2864#0      GGTGGCACGCTACGCNTTCCCCTGGGGCCNAACAGAGNANCGAACNTGCTCCCCCACGAG 825
consensus_2864#1      ------------------------------------------------------------
                                                                                  

consensus_2864#0      AGGGCCCANCACAATCCCATANACAAAGCCCATGGCCCAAAAACCCTCACAGCACAANCA 885
consensus_2864#1      ------------------------------------------------------------
                                                                                  

consensus_2864#0      TTGGCGCCCGCCACACCCGANGCGCGCANACACCACATTGGACCCCCCACTCACCAGGCA 945
consensus_2864#1      ------------------------------------------------------------
                                                                                  

consensus_2864#0      CACA 949
consensus_2864#1      ----