cluster # 2888

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Anopheles gambiae
cluster # 2888 cluster # 2888 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2888#0 length = 635 sequences # 1

consensus_2888#1 length = 384 sequences # 1

consensusID : consensus_2888#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [CCGCCCACGCGTCCGACACGGACCACAAACTCCGGAGTGGCACACAACGACGTTAAAACCGTCTTTCAGTCTTCCCTATTCTGCCACTGTGCGTGTAGAATAGTGGACAGAACGAGCAGCGCAACCACGAAGACGACCTGCCCCGCGATGAAAATGGCCCAGGAGCGTCTTGATCGTTAGTGAAACTGTGTCATCGGTTGACTGCTGCTACCGGAAGCGAGTGGTTTAATTAAAAACAACACGTCCAGACATCAGAGACAGTTATTAGGGAGTGTTCGTGTGTGTGTGTGATAGCACAGTGCTCATTTATTCTATATCAAGTTCGAACCGAAGCTCACGAAGATGGGTGCGCCACCTGCCAAGAAGCCGCTGGTGAACAGGAATCTAATATCCTTGAAAATTGTGCTCTTCCTGTTCTACGGAGCCCTAGGATGTCTGCATCCGTACATCCAGAAGCACATGACCCTGACCGGGCTGAATTACTACGAGTCGCAGCTGGTGACGCTAATTGCTCCGCTGGTGGCAATTCTGGGTCCACTGATAATTGCCCCACTGGTCGATCGGTTGGCAGGACGGGCTGGTGCATCGTTCGGCAAACGGTTGCGCTTACTAGCCGCCCTCTGCATGATTCTGTC]

[+] EMBL BM653797             [CCGCCCACGCGTCCGACACGGACCACAAACTCCGGAGTGGCACACAACGACGTTAAAACCGTCTTTCAGTCTTCCCTATTCTGCCACTGTGCGTGTAGAATAGTGGACAGAACGAGCAGCGCAACCACGAAGACGACCTGCCCCGCGATGAAAATGGCCCAGGAGCGTCTTGATCGTTAGTGAAACTGTGTCATCGGTTGACTGCTGCTACCGGAAGCGAGTGGTTTAATTAAAAACAACACGTCCAGACATCAGAGACAGTTATTAGGGAGTGTTCGTGTGTGTGTGTGATAGCACAGTGCTCATTTATTCTATATCAAGTTCGAACCGAAGCTCACGAAGATGGGTGCGCCACCTGCCAAGAAGCCGCTGGTGAACAGGAATCTAATATCCTTGAAAATTGTGCTCTTCCTGTTCTACGGAGCCCTAGGATGTCTGCATCCGTACATCCAGAAGCACATGACCCTGACCGGGCTGAATTACTACGAGTCGCAGCTGGTGACGCTAATTGCTCCGCTGGTGGCAATTCTGGGTCCACTGATAATTGCCCCACTGGTCGATCGGTTGGCAGGACGGGCTGGTGCATCGTTCGGCAAACGGTTGCGCTTACTAGCCGCCCTCTGCATGATTCTGTC]




>consensus_2888#0
CCGCCCACGCGTCCGACACGGACCACAAACTCCGGAGTGGCACACAACGACGTTAAAACC
GTCTTTCAGTCTTCCCTATTCTGCCACTGTGCGTGTAGAATAGTGGACAGAACGAGCAGC
GCAACCACGAAGACGACCTGCCCCGCGATGAAAATGGCCCAGGAGCGTCTTGATCGTTAG
TGAAACTGTGTCATCGGTTGACTGCTGCTACCGGAAGCGAGTGGTTTAATTAAAAACAAC
ACGTCCAGACATCAGAGACAGTTATTAGGGAGTGTTCGTGTGTGTGTGTGATAGCACAGT
GCTCATTTATTCTATATCAAGTTCGAACCGAAGCTCACGAAGATGGGTGCGCCACCTGCC
AAGAAGCCGCTGGTGAACAGGAATCTAATATCCTTGAAAATTGTGCTCTTCCTGTTCTAC
GGAGCCCTAGGATGTCTGCATCCGTACATCCAGAAGCACATGACCCTGACCGGGCTGAAT
TACTACGAGTCGCAGCTGGTGACGCTAATTGCTCCGCTGGTGGCAATTCTGGGTCCACTG
ATAATTGCCCCACTGGTCGATCGGTTGGCAGGACGGGCTGGTGCATCGTTCGGCAAACGG
TTGCGCTTACTAGCCGCCCTCTGCATGATTCTGTC

consensusID : consensus_2888#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [CCGCCCACGCGTCCGTGCTATCAACACTGTTGCGCCACTTACTGTATAGGATACTGTGTGCAGTGTGTCCTAACGCCTGGAACGGCAGTCTCTGCAACTGGGAAGTGATTGGATCGTAAGGTGTCTTCCGGAGTGTAGGACCGTAGGACGAAGACGAGGACTCGCGCTTGGCGTTTTATTAGATTACACGGACCACAAACTCCGGAGTGGCACACAACGACGTTAAAACCGTCTTTCAGTCTTCCCTATTCTGCCACTGTGCGTGTAGAATAGTGGACAGAACGAGCAGCGCAACCACGAAGACGACCTGCCCCGCGATGAAAATGGCCCAGGAGCGTCTTGATCGTTAGTGAAACTGTGTCATCGGTTGACTGCTGCTACCGG]

[+] EMBL BM640295             [CCGCCCACGCGTCCGTGCTATCAACACTGTTGCGCCACTTACTGTATAGGATACTGTGTGCAGTGTGTCCTAACGCCTGGAACGGCAGTCTCTGCAACTGGGAAGTGATTGGATCGTAAGGTGTCTTCCGGAGTGTAGGACCGTAGGACGAAGACGAGGACTCGCGCTTGGCGTTTTATTAGATTACACGGACCACAAACTCCGGAGTGGCACACAACGACGTTAAAACCGTCTTTCAGTCTTCCCTATTCTGCCACTGTGCGTGTAGAATAGTGGACAGAACGAGCAGCGCAACCACGAAGACGACCTGCCCCGCGATGAAAATGGCCCAGGAGCGTCTTGATCGTTAGTGAAACTGTGTCATCGGTTGACTGCTGCTACCGG]




>consensus_2888#1
CCGCCCACGCGTCCGTGCTATCAACACTGTTGCGCCACTTACTGTATAGGATACTGTGTG
CAGTGTGTCCTAACGCCTGGAACGGCAGTCTCTGCAACTGGGAAGTGATTGGATCGTAAG
GTGTCTTCCGGAGTGTAGGACCGTAGGACGAAGACGAGGACTCGCGCTTGGCGTTTTATT
AGATTACACGGACCACAAACTCCGGAGTGGCACACAACGACGTTAAAACCGTCTTTCAGT
CTTCCCTATTCTGCCACTGTGCGTGTAGAATAGTGGACAGAACGAGCAGCGCAACCACGA
AGACGACCTGCCCCGCGATGAAAATGGCCCAGGAGCGTCTTGATCGTTAGTGAAACTGTG
TCATCGGTTGACTGCTGCTACCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2888#0      ------------------------------------------------------------
consensus_2888#1      CCGCCCACGCGTCCGTGCTATCAACACTGTTGCGCCACTTACTGTATAGGATACTGTGTG 60
                                                                                  

consensus_2888#0      ------------------------------------------------------------
consensus_2888#1      CAGTGTGTCCTAACGCCTGGAACGGCAGTCTCTGCAACTGGGAAGTGATTGGATCGTAAG 120
                                                                                  

consensus_2888#0      --------------------------------------------------CCGCCCACGC 10
consensus_2888#1      GTGTCTTCCGGAGTGTAGGACCGTAGGACGAAGACGAGGACTCGCGCTTGGCGTTTTATT 180
                                                                         **       

consensus_2888#0      GTCCGACACGGACCACAAACTCCGGAGTGGCACACAACGACGTTAAAACCGTCTTTCAGT 70
consensus_2888#1      AGATTACACGGACCACAAACTCCGGAGTGGCACACAACGACGTTAAAACCGTCTTTCAGT 240
                           *******************************************************

consensus_2888#0      CTTCCCTATTCTGCCACTGTGCGTGTAGAATAGTGGACAGAACGAGCAGCGCAACCACGA 130
consensus_2888#1      CTTCCCTATTCTGCCACTGTGCGTGTAGAATAGTGGACAGAACGAGCAGCGCAACCACGA 300
                      ************************************************************

consensus_2888#0      AGACGACCTGCCCCGCGATGAAAATGGCCCAGGAGCGTCTTGATCGTTAGTGAAACTGTG 190
consensus_2888#1      AGACGACCTGCCCCGCGATGAAAATGGCCCAGGAGCGTCTTGATCGTTAGTGAAACTGTG 360
                      ************************************************************

consensus_2888#0      TCATCGGTTGACTGCTGCTACCGGAAGCGAGTGGTTTAATTAAAAACAACACGTCCAGAC 250
consensus_2888#1      TCATCGGTTGACTGCTGCTACCGG------------------------------------ 384
                      ************************                                    

consensus_2888#0      ATCAGAGACAGTTATTAGGGAGTGTTCGTGTGTGTGTGTGATAGCACAGTGCTCATTTAT 310
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      TCTATATCAAGTTCGAACCGAAGCTCACGAAGATGGGTGCGCCACCTGCCAAGAAGCCGC 370
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      TGGTGAACAGGAATCTAATATCCTTGAAAATTGTGCTCTTCCTGTTCTACGGAGCCCTAG 430
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      GATGTCTGCATCCGTACATCCAGAAGCACATGACCCTGACCGGGCTGAATTACTACGAGT 490
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      CGCAGCTGGTGACGCTAATTGCTCCGCTGGTGGCAATTCTGGGTCCACTGATAATTGCCC 550
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      CACTGGTCGATCGGTTGGCAGGACGGGCTGGTGCATCGTTCGGCAAACGGTTGCGCTTAC 610
consensus_2888#1      ------------------------------------------------------------
                                                                                  

consensus_2888#0      TAGCCGCCCTCTGCATGATTCTGTC 635
consensus_2888#1      -------------------------