cluster # 2892

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Anopheles gambiae
cluster # 2892 cluster # 2892 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2892#0 length = 553 sequences # 1

consensus_2892#1 length = 550 sequences # 1

consensusID : consensus_2892#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence

                              [TTTTTCTCCATTCCGTTCCCATAACTACAGACTCGCCACTTGAAGACGTTTAAACCGTAAAACAAGGGAAACGAGCCCCAAGTGTCCATTTGGATGCACTCCAATAGCGTTCGGGGAAGCATCCGAGAGAGAGTGTGTTTGTGTGTGTGTAACCTGCATGCAAAAAAAAAACGAAATATGCCAACCAAAACTGAAATCGAAGTGAAGCAGCTCGTGAGAAGTCAGCTTTTTTCTTCTATATTGTAAATGTGTGCCCCCCCCCACCCCACCAGAAGACGGTAGTCAGCCCAGTTTTGATCGAGGAAAGTGACACGAGAGTGAGACTGTGTGCCTAGCACGAAAACAGAAGAAAAACCCTCCCATTGCAAAGTCCTTTATTTGGTGCGTTGATGAGATGAAACGCACCCCCCCCGCCCCCCCCCCCCTTTGCACAGAAAGTGCCTCCAGCGCCGGTTGTTGTGGGTTGGCAAGGCAGGGAGGGGGATCCAGCTGAACGAACACCCCCGCCTTCCCAGCATCTAGCGTCTACGGTCTGCAACTGCGAATTCGTTCT]

[+] EMBL BX626708             [TTTTTCTCCATTCCGTTCCCATAACTACAGACTCGCCACTTGAAGACGTTTAAACCGTAAAACAAGGGAAACGAGCCCCAAGTGTCCATTTGGATGCACTCCAATAGCGTTCGGGGAAGCATCCGAGAGAGAGTGTGTTTGTGTGTGTGTAACCTGCATGCAAAAAAAAAACGAAATATGCCAACCAAAACTGAAATCGAAGTGAAGCAGCTCGTGAGAAGTCAGCTTTTTTCTTCTATATTGTAAATGTGTGCCCCCCCCCACCCCACCAGAAGACGGTAGTCAGCCCAGTTTTGATCGAGGAAAGTGACACGAGAGTGAGACTGTGTGCCTAGCACGAAAACAGAAGAAAAACCCTCCCATTGCAAAGTCCTTTATTTGGTGCGTTGATGAGATGAAACGCACCCCCCCCGCCCCCCCCCCCCTTTGCACAGAAAGTGCCTCCAGCGCCGGTTGTTGTGGGTTGGCAAGGCAGGGAGGGGGATCCAGCTGAACGAACACCCCCGCCTTCCCAGCATCTAGCGTCTACGGTCTGCAACTGCGAATTCGTTCT]




>consensus_2892#0
TTTTTCTCCATTCCGTTCCCATAACTACAGACTCGCCACTTGAAGACGTTTAAACCGTAA
AACAAGGGAAACGAGCCCCAAGTGTCCATTTGGATGCACTCCAATAGCGTTCGGGGAAGC
ATCCGAGAGAGAGTGTGTTTGTGTGTGTGTAACCTGCATGCAAAAAAAAAACGAAATATG
CCAACCAAAACTGAAATCGAAGTGAAGCAGCTCGTGAGAAGTCAGCTTTTTTCTTCTATA
TTGTAAATGTGTGCCCCCCCCCACCCCACCAGAAGACGGTAGTCAGCCCAGTTTTGATCG
AGGAAAGTGACACGAGAGTGAGACTGTGTGCCTAGCACGAAAACAGAAGAAAAACCCTCC
CATTGCAAAGTCCTTTATTTGGTGCGTTGATGAGATGAAACGCACCCCCCCCGCCCCCCC
CCCCCTTTGCACAGAAAGTGCCTCCAGCGCCGGTTGTTGTGGGTTGGCAAGGCAGGGAGG
GGGATCCAGCTGAACGAACACCCCCGCCTTCCCAGCATCTAGCGTCTACGGTCTGCAACT
GCGAATTCGTTCT

consensusID : consensus_2892#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [AAGGGATGGGCACGCTGCAGAAGACTCGCCACTTGAAGACGTTTAAACCGTAAAACAAGGGGGAAACGAGCCAGTTCAGACCGAACCAAGTGTCCATTTTGATGCACTCCAATAGCGCTCGGGGAAGCATCCGAGAGAGAGTGTGTCTGTGTGTTTGTAACCTGCATGCAAAAAACGAAATATGCCAACCAAAACTGAAATCGAAGAGAAGCAGCTCGTGAGAAGTCAGCTTTTTTCTTCTATATTGTAAATGTGTGCCCCCCACCAGAAGACGGTAGTCCGTCCAGTTTTGATCGAGGAAAGTGACACGAGAGTGAGACTGTGTGCCTAGCACGAAAACAGACGAAGAATCCTCCCATTGCAAAGTCCTTTATTTGGTGCGTCGATGCGAGATGAAACGCACCTTCCCCCCTTTGCACAGAAAGTGCCTCCAGCGCCGGTTGTTGTGGGTTGGCAGGGCAGGGAGGGAGAGCCAGCTGAACGAACACCCCCGCCTTCCCAGCGTCTAGCGTCTACGGTCTGCAACTGCGAATTCGTTCTTGCGAAAACT]

[+] EMBL BX623779             [AAGGGATGGGCACGCTGCAGAAGACTCGCCACTTGAAGACGTTTAAACCGTAAAACAAGGGGGAAACGAGCCAGTTCAGACCGAACCAAGTGTCCATTTTGATGCACTCCAATAGCGCTCGGGGAAGCATCCGAGAGAGAGTGTGTCTGTGTGTTTGTAACCTGCATGCAAAAAACGAAATATGCCAACCAAAACTGAAATCGAAGAGAAGCAGCTCGTGAGAAGTCAGCTTTTTTCTTCTATATTGTAAATGTGTGCCCCCCACCAGAAGACGGTAGTCCGTCCAGTTTTGATCGAGGAAAGTGACACGAGAGTGAGACTGTGTGCCTAGCACGAAAACAGACGAAGAATCCTCCCATTGCAAAGTCCTTTATTTGGTGCGTCGATGCGAGATGAAACGCACCTTCCCCCCTTTGCACAGAAAGTGCCTCCAGCGCCGGTTGTTGTGGGTTGGCAGGGCAGGGAGGGAGAGCCAGCTGAACGAACACCCCCGCCTTCCCAGCGTCTAGCGTCTACGGTCTGCAACTGCGAATTCGTTCTTGCGAAAACT]




>consensus_2892#1
AAGGGATGGGCACGCTGCAGAAGACTCGCCACTTGAAGACGTTTAAACCGTAAAACAAGG
GGGAAACGAGCCAGTTCAGACCGAACCAAGTGTCCATTTTGATGCACTCCAATAGCGCTC
GGGGAAGCATCCGAGAGAGAGTGTGTCTGTGTGTTTGTAACCTGCATGCAAAAAACGAAA
TATGCCAACCAAAACTGAAATCGAAGAGAAGCAGCTCGTGAGAAGTCAGCTTTTTTCTTC
TATATTGTAAATGTGTGCCCCCCACCAGAAGACGGTAGTCCGTCCAGTTTTGATCGAGGA
AAGTGACACGAGAGTGAGACTGTGTGCCTAGCACGAAAACAGACGAAGAATCCTCCCATT
GCAAAGTCCTTTATTTGGTGCGTCGATGCGAGATGAAACGCACCTTCCCCCCTTTGCACA
GAAAGTGCCTCCAGCGCCGGTTGTTGTGGGTTGGCAGGGCAGGGAGGGAGAGCCAGCTGA
ACGAACACCCCCGCCTTCCCAGCGTCTAGCGTCTACGGTCTGCAACTGCGAATTCGTTCT
TGCGAAAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2892#0      TTTTTCTCCATTCCGTTCCCATAACTACAGACTCGCCACTTGAAGACGTTTAAACCGTAA 60
consensus_2892#1      -------AAGGGATGGGCACGCTGCAGAAGACTCGCCACTTGAAGACGTTTAAACCGTAA 53
                                    *  * *    *   ********************************

consensus_2892#0      AACAAGGG--AAACGAGCC-------------CCAAGTGTCCATTTGGATGCACTCCAAT 105
consensus_2892#1      AACAAGGGGGAAACGAGCCAGTTCAGACCGAACCAAGTGTCCATTTTGATGCACTCCAAT 113
                      ********  *********             ************** *************

consensus_2892#0      AGCGTTCGGGGAAGCATCCGAGAGAGAGTGTGTTTGTGTGTGTGTAACCTGCATGCAAAA 165
consensus_2892#1      AGCGCTCGGGGAAGCATCCGAGAGAGAGTGTGTCTGTGTGTTTGTAACCTGCATGCAAAA 173
                      **** **************************** ******* ******************

consensus_2892#0      AAAAAACGAAATATGCCAACCAAAACTGAAATCGAAGTGAAGCAGCTCGTGAGAAGTCAG 225
consensus_2892#1      AA----CGAAATATGCCAACCAAAACTGAAATCGAAGAGAAGCAGCTCGTGAGAAGTCAG 229
                      **    ******************************* **********************

consensus_2892#0      CTTTTTTCTTCTATATTGTAAATGTGTGCCCCCCCCCACCCCACCAGAAGACGGTAGTCA 285
consensus_2892#1      CTTTTTTCTTCTATATTGTAAATGTGTGCCCCCC--------ACCAGAAGACGGTAGTCC 281
                      **********************************        ***************** 

consensus_2892#0      GCCCAGTTTTGATCGAGGAAAGTGACACGAGAGTGAGACTGTGTGCCTAGCACGAAAACA 345
consensus_2892#1      GTCCAGTTTTGATCGAGGAAAGTGACACGAGAGTGAGACTGTGTGCCTAGCACGAAAACA 341
                      * **********************************************************

consensus_2892#0      GAAGAAAAACCCTCCCATTGCAAAGTCCTTTATTTGGTGCGTTGATG--AGATGAAACGC 403
consensus_2892#1      GACGAAGAATCCTCCCATTGCAAAGTCCTTTATTTGGTGCGTCGATGCGAGATGAAACGC 401
                      ** *** ** ******************************** ****  ***********

consensus_2892#0      ACCCCCCCCGCCCCCCCCCCCCTTTGCACAGAAAGTGCCTCCAGCGCCGGTTGTTGTGGG 463
consensus_2892#1      ACCTTCCCC-----------CCTTTGCACAGAAAGTGCCTCCAGCGCCGGTTGTTGTGGG 450
                      ***  ****           ****************************************

consensus_2892#0      TTGGCAAGGCAGGGAGGGGGATCCAGCTGAACGAACACCCCCGCCTTCCCAGCATCTAGC 523
consensus_2892#1      TTGGCAGGGCAGGGAGGGAGAGCCAGCTGAACGAACACCCCCGCCTTCCCAGCGTCTAGC 510
                      ****** *********** ** ******************************* ******

consensus_2892#0      GTCTACGGTCTGCAACTGCGAATTCGTTCT---------- 553
consensus_2892#1      GTCTACGGTCTGCAACTGCGAATTCGTTCTTGCGAAAACT 550
                      ******************************