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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2898#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGGGTGAGACCGTGGTACCGCGGAATGTGTGCGTGAGCTCTGTGGTGTGCGAGAGAGGTGTGTGACAGGAAGTTTTCATTTCACGAATTATGAGCCCGTCGTGAGTGTGTGGTGTGCACTAACGTCCGGCGGCGCCTAGAGGATGGTGGATGATGGTGTACGAGTTATAATTCTTGTCCAGTGTCGAGTGGGATTACCATTCGTGAATTGTTACACACGATGGATTGCATGAAGCTTCTTTTCGATGACAGCTCGAGCATTTGATGTTGGTGTACAACTGTGAACAGGAAGAGGCCTGCGAGCTGCCAACGCCCCAGAACGAGTACTCCCACTACGTGTGCGATGACAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGATTTGTGCGATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTCCAGGGCTACTGCAAACGGCCCGGAGAGTGTCGCTGCAAGCTTGGCTTTTACGGGGAAAACTGTAACCGATGCATCCCGCTGCCCGGGTGCCAGCACGGCGGCTGCCAGGTGTCGTTCGAGTGCGTTTGTCACAAGGGCTGGGATGGAATCTTCTGCTCGGAACCAATTTGCCGT]
[+] EMBL BM657186 [CCGCCCACGCGTCCGCCCACGCGTCCGGGGTGAGACCGTGGTACCGCGGAATGTGTGCGTGAGCTCTGTGGTGTGCGAGAGAGGTGTGTGACAGGAAGTTTTCATTTCACGAATTATGAGCCCGTCGTGAGTGTGTGGTGTGCACTAACGTCCGGCGGCGCCTAGAGGATGGTGGATGATGGTGTACGAGTTATAATTCTTGTCCAGTGTCGAGTGGGATTACCATTCGTGAATTGTTACACACGATGGATTGCATGAAGCTTCTTTTCGATGACAGCTCGAGCATTTGATGTTGGTGTACAACTGTGAACAGGAAGAGGCCTGCGAGCTGCCAACGCCCCAGAACGAGTACTCCCACTACGTGTGCGATGACAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGATTTGTGCGATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTCCAGGGCTACTGCAAACGGCCCGGAGAGTGTCGCTGCAAGCTTGGCTTTTACGGGGAAAACTGTAACCGATGCATCCCGCTGCCCGGGTGCCAGCACGGCGGCTGCCAGGTGTCGTTCGAGTGCGTTTGTCACAAGGGCTGGGATGGAATCTTCTGCTCGGAACCAATTTGCCGT]
consensusID : consensus_2898#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence
[TTTTCGGTCACAGTTTCCGTCTGTCGCAAAAACGTGATCGCGCNGCATGTAGTCGNCAAACCNATTACTATAGGNATCATCGTTGTCGGCGCGCATGCTGCNAGCTGATCGCGCATCGTCTCCCCGTCCGGTGCCGTCCCGTTACGTGCCAAAGTGGAAGNAAGCAGGCCTGCGAGCTGCCAACGCCCNNGTAACGAGTACTCCCACTACGTGTGCGATGNCAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGNANCTGTGCGATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTTCAGGGCTACTGCAACNGGCCCGGCGAGTGCCGCTGCCNAGCTTGGCCTTTTACGGG]
[+] EMBL BX619619 [TTTTCGGTCACAGTTTCCGTCTGTCGCAAAAACGTGATCGCGCNGCATGTAGTCGNCAAACCNATTACTATAGGNATCATCGTTGTCGGCGCGCATGCTGCNAGCTGATCGCGCATCGTCTCCCCGTCCGGTGCCGTCCCGTTACGTGCCAAAGTGGAAGNAAGCAGGCCTGCGAGCTGCCAACGCCCNNGTAACGAGTACTCCCACTACGTGTGCGATGNCAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGNANCTGTGCGATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTTCAGGGCTACTGCAACNGGCCCGGCGAGTGCCGCTGCCNAGCTTGGCCTTTTACGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2898#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGGTGAGACCGTGGTACCGCGGAATGTGTGCGT 60
consensus_2898#1 ------------------------------------------------------------
consensus_2898#0 GAGCTCTGTGGTGTGCGAGAGAGGTGTGTGACAGGAAGTTTTCATTTCACGAATTATGAG 120
consensus_2898#1 ------------------------------------------------------------
consensus_2898#0 CCCGTCGTGAGTGTGTGGTGTGCACTAACGTCCGGCGGCGCCTAGAGGATGGTGGATGAT 180
consensus_2898#1 ---------------TTTTCGGTCACAGTTTCCGTCTGTCGCAAAAACGTGATCGCGCNG 45
* * * * **** * * * * * ** * *
consensus_2898#0 GGTGTACGAGTTATAATTCTTGTCCAGTGTCGAGTGGGATTACCATTCGTGAATTGTTAC 240
consensus_2898#1 CATGTAGTCGNCAAA--------CCNATTACTATAGGNATCATCGTTGTCGGCGCG---C 94
**** * * * ** * * * ** ** * * ** * * *
consensus_2898#0 ACACGATGGATTGCATGAAGCTTCTTTTCGATGACAGCTCGAGCATTTGATGTTGGTGTA 300
consensus_2898#1 ATGCTGCNAGCTG-ATCGCGCATCGTCTCC----CCGTCCGGTGCCGTCCCGTTA-CGTG 148
* * ** ** ** ** * ** * * ** * *** **
consensus_2898#0 CAACTGTGAACAGGAAGAGGCCTGCGAGCTGCCAACGCCCCAG-AACGAGTACTCCCACT 359
consensus_2898#1 CCAAAGTGGAAGNAAGCAGGCCTGCGAGCTGCCAACGCCCNNGTAACGAGTACTCCCACT 208
* * *** * * *********************** * ****************
consensus_2898#0 ACGTGTGCGATGACAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGA-TTTGTGC 418
consensus_2898#1 ACGTGTGCGATGNCAACGGGGACGTGAAGTGTTTGCCGGGCTGGACGGGCGNANCTGTGC 268
************ ************************************** *****
consensus_2898#0 GATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTCCAGGGCTACTGCAAACGGCCCGGA 478
consensus_2898#1 GATGTGCCGATCTGCAAGAAGGGTTGCGATCCGCTTCAGGGCTACTGCAACNGGCCCGGC 328
*********************************** ************** *******
consensus_2898#0 GAGTGTCGCTGC-AAGCTTGGC-TTTTACGGGGAAAACTGTAACCGATGCATCCCGCTGC 536
consensus_2898#1 GAGTGCCGCTGCCNAGCTTGGCCTTTTACGGG---------------------------- 360
***** ****** ******** *********
consensus_2898#0 CCGGGTGCCAGCACGGCGGCTGCCAGGTGTCGTTCGAGTGCGTTTGTCACAAGGGCTGGG 596
consensus_2898#1 ------------------------------------------------------------
consensus_2898#0 ATGGAATCTTCTGCTCGGAACCAATTTGCCGT 628
consensus_2898#1 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||