cluster # 2928

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Anopheles gambiae
cluster # 2928 cluster # 2928 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2928#0 length = 671 sequences # 1

consensus_2928#1 length = 457 sequences # 1

consensusID : consensus_2928#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence

                              [CCGCCCACGCGTCCGGGTAAGTTATCTTTTCGTACAATTAAAACACATGTTAGGGACCGCAAAGAAAAAGGATTTTAAAATGATGATATAAACTAGAATGATTCTCTATGATCGTAAACTATCTCAAGCTCAACAGGACTGAAAATATTCAAAATTAGTCAACATAGTCCTGACATGCTCGTGTGTGTACAATGTTATAATTTGTATTCTTTCTTTCAATTTCAGACCCAACACAGCAGCGCAGAAAACAGACAAATTGATTAACAAGACCAAAACAATCTAAAAGACCCAACACAGCAAACGGATGGATTGGCGATTGAACAGTAGAACCAAAACAATTGTAAAAGATCTAAATACAATCCAAGGATACAACAATCGGACGAACCGATTAATGGAATTTGATTCGTACTAGGTTATGTTGCTGATTCCATCTCCTCTAATCCGCTGTATTCGGCATTAATTCCAAAAATAATCTTGTGCAATAGTCCAACATATATTGCACACTATTATGAAATCCATTCATCATGCTGTGAATCATCGAGCATCTTTTGTTCATGAGTTTCAGGTTTTAGCTGCCTTCAACATGGTCTTTCCGGGGAAATCTCTCTTGCGGGTGGGTATAGCGCAATATTGCGAGGAAAGGTATTTCACCATATATCACAATTTTTAGA]

[+] EMBL BM578030             [CCGCCCACGCGTCCGGGTAAGTTATCTTTTCGTACAATTAAAACACATGTTAGGGACCGCAAAGAAAAAGGATTTTAAAATGATGATATAAACTAGAATGATTCTCTATGATCGTAAACTATCTCAAGCTCAACAGGACTGAAAATATTCAAAATTAGTCAACATAGTCCTGACATGCTCGTGTGTGTACAATGTTATAATTTGTATTCTTTCTTTCAATTTCAGACCCAACACAGCAGCGCAGAAAACAGACAAATTGATTAACAAGACCAAAACAATCTAAAAGACCCAACACAGCAAACGGATGGATTGGCGATTGAACAGTAGAACCAAAACAATTGTAAAAGATCTAAATACAATCCAAGGATACAACAATCGGACGAACCGATTAATGGAATTTGATTCGTACTAGGTTATGTTGCTGATTCCATCTCCTCTAATCCGCTGTATTCGGCATTAATTCCAAAAATAATCTTGTGCAATAGTCCAACATATATTGCACACTATTATGAAATCCATTCATCATGCTGTGAATCATCGAGCATCTTTTGTTCATGAGTTTCAGGTTTTAGCTGCCTTCAACATGGTCTTTCCGGGGAAATCTCTCTTGCGGGTGGGTATAGCGCAATATTGCGAGGAAAGGTATTTCACCATATATCACAATTTTTAGA]




>consensus_2928#0
CCGCCCACGCGTCCGGGTAAGTTATCTTTTCGTACAATTAAAACACATGTTAGGGACCGC
AAAGAAAAAGGATTTTAAAATGATGATATAAACTAGAATGATTCTCTATGATCGTAAACT
ATCTCAAGCTCAACAGGACTGAAAATATTCAAAATTAGTCAACATAGTCCTGACATGCTC
GTGTGTGTACAATGTTATAATTTGTATTCTTTCTTTCAATTTCAGACCCAACACAGCAGC
GCAGAAAACAGACAAATTGATTAACAAGACCAAAACAATCTAAAAGACCCAACACAGCAA
ACGGATGGATTGGCGATTGAACAGTAGAACCAAAACAATTGTAAAAGATCTAAATACAAT
CCAAGGATACAACAATCGGACGAACCGATTAATGGAATTTGATTCGTACTAGGTTATGTT
GCTGATTCCATCTCCTCTAATCCGCTGTATTCGGCATTAATTCCAAAAATAATCTTGTGC
AATAGTCCAACATATATTGCACACTATTATGAAATCCATTCATCATGCTGTGAATCATCG
AGCATCTTTTGTTCATGAGTTTCAGGTTTTAGCTGCCTTCAACATGGTCTTTCCGGGGAA
ATCTCTCTTGCGGGTGGGTATAGCGCAATATTGCGAGGAAAGGTATTTCACCATATATCA
CAATTTTTAGA

consensusID : consensus_2928#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence

                              [CCGAAAAAACCTTCTTCGGTTTTAGATGGATTATTAACTTCCCCTTATTTTGTTTCTATTTTAAGATCTAAATACAATCCAAGGATACAACAATCGGACGAACCTATTAATGGAATTTGATTGGTACTAGATCAAATAGAAAGAAGGAATCGAACTGCGTGAGTTGGGCACTTTGACGCTTAAAAGGTTATGTTGCTGTTCCTATCTCTCCTATATTCCGCTGTATTCGGCATTATTTCCAAAAAGAATCTTGTGCAATAGTCCAACATATATTGCACACTATTATGAAATCCATTCATCATGCTGTGAATCATCGAGCATCTTTTGTTCATGAGTTTCAGGTTTAAGCTGCCTTCAACATGGTCTTTCCAGGGAAATCTCTCTTGCGGGTGGGTATAGCGCAATATTGCGAGGAAAGGTATTTCACCATATATCACAATTTTTAGAGTATAAGTGG]

[+] EMBL BM597026             [CCGAAAAAACCTTCTTCGGTTTTAGATGGATTATTAACTTCCCCTTATTTTGTTTCTATTTTAAGATCTAAATACAATCCAAGGATACAACAATCGGACGAACCTATTAATGGAATTTGATTGGTACTAGATCAAATAGAAAGAAGGAATCGAACTGCGTGAGTTGGGCACTTTGACGCTTAAAAGGTTATGTTGCTGTTCCTATCTCTCCTATATTCCGCTGTATTCGGCATTATTTCCAAAAAGAATCTTGTGCAATAGTCCAACATATATTGCACACTATTATGAAATCCATTCATCATGCTGTGAATCATCGAGCATCTTTTGTTCATGAGTTTCAGGTTTAAGCTGCCTTCAACATGGTCTTTCCAGGGAAATCTCTCTTGCGGGTGGGTATAGCGCAATATTGCGAGGAAAGGTATTTCACCATATATCACAATTTTTAGAGTATAAGTGG]




>consensus_2928#1
CCGAAAAAACCTTCTTCGGTTTTAGATGGATTATTAACTTCCCCTTATTTTGTTTCTATT
TTAAGATCTAAATACAATCCAAGGATACAACAATCGGACGAACCTATTAATGGAATTTGA
TTGGTACTAGATCAAATAGAAAGAAGGAATCGAACTGCGTGAGTTGGGCACTTTGACGCT
TAAAAGGTTATGTTGCTGTTCCTATCTCTCCTATATTCCGCTGTATTCGGCATTATTTCC
AAAAAGAATCTTGTGCAATAGTCCAACATATATTGCACACTATTATGAAATCCATTCATC
ATGCTGTGAATCATCGAGCATCTTTTGTTCATGAGTTTCAGGTTTAAGCTGCCTTCAACA
TGGTCTTTCCAGGGAAATCTCTCTTGCGGGTGGGTATAGCGCAATATTGCGAGGAAAGGT
ATTTCACCATATATCACAATTTTTAGAGTATAAGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2928#0      CCGCCCACGCGTCCGGGTAAGTTATCTTTTCGTACAATTAAAACACATGTTAGGGACCGC 60
consensus_2928#1      ------------------------------------------------------------
                                                                                  

consensus_2928#0      AAAGAAAAAGGATTTTAAAATGATGATATAAACTAGAATGATTCTCTATGATCGTAAACT 120
consensus_2928#1      ------------------------------------------------------------
                                                                                  

consensus_2928#0      ATCTCAAGCTCAACAGGACTGAAAATATTCAAAATTAGTCAACATAGTCCTGACATGCTC 180
consensus_2928#1      ------------------------------------------------------------
                                                                                  

consensus_2928#0      GTGTGTGTACAATGTTATAATTTGTATTCTTTCTTTCAATTTCAGACCCAACACAGCAGC 240
consensus_2928#1      ----------------------------------------------CCGAAAAAACCTTC 14
                                                                    ** ** * * *  *

consensus_2928#0      GCAGAAAACAGACAAATTGATTAACAAGACCAAAA-------CAATCTAAAAGACCCAAC 293
consensus_2928#1      TTCGGTTTTAGATGGATT-ATTAACTTCCCCTTATTTTGTTTCTATTTTAAGATCTAAAT 73
                         *     ***   *** ******    **  *        * ** * **   *  ** 

consensus_2928#0      ACAGCAAACGGATGGATTGGCGATTGAACAGTAGAACCAAAACAATTGTAAAAGATCTAA 353
consensus_2928#1      ACAATCCAAGGATACA---ACAATCGGACGAACCTATTAATGGAATTTGATTGGTACTAG 130
                      ***    * ****  *    * ** * **      *  **   ****  *   *  *** 

consensus_2928#0      ATACAATCCAAGGATACAACAATCGGACGAACCGATTAATGGAATTTGATTCGTACTAGG 413
consensus_2928#1      ATCAAATAGAAAGA---AGGAATCGAACTGCGTGAGTTGGGCACTTTGACGCTTAAAAGG 187
                      **  ***  ** **   *  ***** **     ** *   * * *****  * **  ***

consensus_2928#0      TTATGTTGCTGATTCCATCTCCTCTAA--TCCGCTGTATTCGGCATTAATTCCAAAAATA 471
consensus_2928#1      TTATGTTGCTGTTCCTATCTCTCCTATATTCCGCTGTATTCGGCATTATTTCCAAAAAGA 247
                      *********** * * *****  ***   ******************* ********* *

consensus_2928#0      ATCTTGTGCAATAGTCCAACATATATTGCACACTATTATGAAATCCATTCATCATGCTGT 531
consensus_2928#1      ATCTTGTGCAATAGTCCAACATATATTGCACACTATTATGAAATCCATTCATCATGCTGT 307
                      ************************************************************

consensus_2928#0      GAATCATCGAGCATCTTTTGTTCATGAGTTTCAGGTTTTAGCTGCCTTCAACATGGTCTT 591
consensus_2928#1      GAATCATCGAGCATCTTTTGTTCATGAGTTTCAGGTTTAAGCTGCCTTCAACATGGTCTT 367
                      ************************************** *********************

consensus_2928#0      TCCGGGGAAATCTCTCTTGCGGGTGGGTATAGCGCAATATTGCGAGGAAAGGTATTTCAC 651
consensus_2928#1      TCCAGGGAAATCTCTCTTGCGGGTGGGTATAGCGCAATATTGCGAGGAAAGGTATTTCAC 427
                      *** ********************************************************

consensus_2928#0      CATATATCACAATTTTTAGA---------- 671
consensus_2928#1      CATATATCACAATTTTTAGAGTATAAGTGG 457
                      ********************