cluster # 2935

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Anopheles gambiae
cluster # 2935 cluster # 2935 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2935#0 length = 692 sequences # 1

consensus_2935#1 length = 270 sequences # 1

consensusID : consensus_2935#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence

                              [GGAAAAATAAAACAATGCAAAAAAAGAGTTATGAAACATATAAAAGCAGAGCCAGTTCACTTTAGATAAGTAGCGATTAACAAAACTAAACGACGTTGAAATGCAAAACAAGTAGTAGCGTGTAAGGCGAATAAAAAAAAAAGGTAGGAACGCAACATGAGAGGAACCAACAAAAACAAAAAAGAAAGCAAGAAAATTCACACAAAAAACAGTCGAAAATAATCAAAGGACGATAAAAGCAACAAGAGGAAGCGAAGGAGAGAACGTGTTTTTGGGCCATAGCGTTCGTTTCGTTTTTATCGTTCTGTTTGGTTGGGGAAGTTGTAGGGGAAGGGGAAGCTAGAGGGAGAGCAACAAATTTCCCGGAACTGCTGTGTAAAATTCTCGTGCACAAGCAAACAAAACAAAGATGGCAAAATTAGACGATAACAGACAACAAAACGCAAACGCAAAAACGTAACGCAACTTTTAGATGATAGTTTTAAACAAACCGAACAAACAGCAAACGCGCAGCAGTAGAAAGGCAAGAAAAGAAGGGTAAATCAAAAAAGAAAAACGATAACCCATCCTCCACACTCACAGCTCAAAGCACAGCAACAGATCAGACAAGCAAAATGAAGGTAACAGGTCAAAACTTCTTACAGCAAAAATCCTAAAACACTTTAAACCGAAAGAAGCAAAAGGAAGCAAAC]

[+] EMBL BX615941             [GGAAAAATAAAACAATGCAAAAAAAGAGTTATGAAACATATAAAAGCAGAGCCAGTTCACTTTAGATAAGTAGCGATTAACAAAACTAAACGACGTTGAAATGCAAAACAAGTAGTAGCGTGTAAGGCGAATAAAAAAAAAAGGTAGGAACGCAACATGAGAGGAACCAACAAAAACAAAAAAGAAAGCAAGAAAATTCACACAAAAAACAGTCGAAAATAATCAAAGGACGATAAAAGCAACAAGAGGAAGCGAAGGAGAGAACGTGTTTTTGGGCCATAGCGTTCGTTTCGTTTTTATCGTTCTGTTTGGTTGGGGAAGTTGTAGGGGAAGGGGAAGCTAGAGGGAGAGCAACAAATTTCCCGGAACTGCTGTGTAAAATTCTCGTGCACAAGCAAACAAAACAAAGATGGCAAAATTAGACGATAACAGACAACAAAACGCAAACGCAAAAACGTAACGCAACTTTTAGATGATAGTTTTAAACAAACCGAACAAACAGCAAACGCGCAGCAGTAGAAAGGCAAGAAAAGAAGGGTAAATCAAAAAAGAAAAACGATAACCCATCCTCCACACTCACAGCTCAAAGCACAGCAACAGATCAGACAAGCAAAATGAAGGTAACAGGTCAAAACTTCTTACAGCAAAAATCCTAAAACACTTTAAACCGAAAGAAGCAAAAGGAAGCAAAC]




>consensus_2935#0
GGAAAAATAAAACAATGCAAAAAAAGAGTTATGAAACATATAAAAGCAGAGCCAGTTCAC
TTTAGATAAGTAGCGATTAACAAAACTAAACGACGTTGAAATGCAAAACAAGTAGTAGCG
TGTAAGGCGAATAAAAAAAAAAGGTAGGAACGCAACATGAGAGGAACCAACAAAAACAAA
AAAGAAAGCAAGAAAATTCACACAAAAAACAGTCGAAAATAATCAAAGGACGATAAAAGC
AACAAGAGGAAGCGAAGGAGAGAACGTGTTTTTGGGCCATAGCGTTCGTTTCGTTTTTAT
CGTTCTGTTTGGTTGGGGAAGTTGTAGGGGAAGGGGAAGCTAGAGGGAGAGCAACAAATT
TCCCGGAACTGCTGTGTAAAATTCTCGTGCACAAGCAAACAAAACAAAGATGGCAAAATT
AGACGATAACAGACAACAAAACGCAAACGCAAAAACGTAACGCAACTTTTAGATGATAGT
TTTAAACAAACCGAACAAACAGCAAACGCGCAGCAGTAGAAAGGCAAGAAAAGAAGGGTA
AATCAAAAAAGAAAAACGATAACCCATCCTCCACACTCACAGCTCAAAGCACAGCAACAG
ATCAGACAAGCAAAATGAAGGTAACAGGTCAAAACTTCTTACAGCAAAAATCCTAAAACA
CTTTAAACCGAAAGAAGCAAAAGGAAGCAAAC

consensusID : consensus_2935#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [CCCCCGAGGNTAAACTAACGACGTTGAAATGCAAAACAGTAGTAGCGTGTAGGCGAATAAAAAAAAAAGGTAGGAACGCAACAATGAGAGGAACCAACAAAAAACAAAAAAAAGAAAGCAAGAAAATTCACACAAAAAAAACAGTCGAAAAATAATCAAAGGACCCGAATAAAAGCAACAACGAGGAAGCGAAGGGAGAGAACGTGTTTTTGGGCCAAAGCGTTCGTTTCGTTTTTATCGTTCTGTTTGGTTTTGGGGAAGTTGTAGGGG]

[+] EMBL AL933416             [CCCCCGAGGNTAAACTAACGACGTTGAAATGCAAAACAGTAGTAGCGTGTAGGCGAATAAAAAAAAAAGGTAGGAACGCAACAATGAGAGGAACCAACAAAAAACAAAAAAAAGAAAGCAAGAAAATTCACACAAAAAAAACAGTCGAAAAATAATCAAAGGACCCGAATAAAAGCAACAACGAGGAAGCGAAGGGAGAGAACGTGTTTTTGGGCCAAAGCGTTCGTTTCGTTTTTATCGTTCTGTTTGGTTTTGGGGAAGTTGTAGGGG]




>consensus_2935#1
CCCCCGAGGNTAAACTAACGACGTTGAAATGCAAAACAGTAGTAGCGTGTAGGCGAATAA
AAAAAAAAGGTAGGAACGCAACAATGAGAGGAACCAACAAAAAACAAAAAAAAGAAAGCA
AGAAAATTCACACAAAAAAAACAGTCGAAAAATAATCAAAGGACCCGAATAAAAGCAACA
ACGAGGAAGCGAAGGGAGAGAACGTGTTTTTGGGCCAAAGCGTTCGTTTCGTTTTTATCG
TTCTGTTTGGTTTTGGGGAAGTTGTAGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2935#0      GGAAAAATAAAACAATGCAAAAAAAGAGTTATGAAACATATAAAAGCAGAGCCAGTTCAC 60
consensus_2935#1      ------------------------------------------------------------
                                                                                  

consensus_2935#0      TTTAGATAAGTAGCGATTAACAAAACTAAACGACGTTGAAATGCAAAACAAGTAGTAGCG 120
consensus_2935#1      ------------CCCCCGAGGNTAAACTAACGACGTTGAAATGCAAAACA-GTAGTAGCG 47
                                   *    *    **   ********************** *********

consensus_2935#0      TGTAAGGCGAATAAAAAAAAAAGGTAGGAACGCAACA-TGAGAGGAACCAACAAAAAC-- 177
consensus_2935#1      TGTA-GGCGAATAAAAAAAAAAGGTAGGAACGCAACAATGAGAGGAACCAACAAAAAACA 106
                      **** ******************************** *******************   

consensus_2935#0      -AAAAAAGAAAGCAAGAAAATTCACACAAAAAA--CAGTCGAAAA-TAATCAAAGGAC-- 231
consensus_2935#1      AAAAAAAGAAAGCAAGAAAATTCACACAAAAAAAACAGTCGAAAAATAATCAAAGGACCC 166
                       ********************************  ********** ************  

consensus_2935#0      -GATAAAAGCAACAA-GAGGAAGCGAAGG-AGAGAACGTGTTTTTGGGCCATAGCGTTCG 288
consensus_2935#1      GAATAAAAGCAACAACGAGGAAGCGAAGGGAGAGAACGTGTTTTTGGGCCAAAGCGTTCG 226
                        ************* ************* ********************* ********

consensus_2935#0      TTTCGTTTTTATCGTTCTGTTTGGTT--GGGGAAGTTGTAGGGGAAGGGGAAGCTAGAGG 346
consensus_2935#1      TTTCGTTTTTATCGTTCTGTTTGGTTTTGGGGAAGTTGTAGGGG---------------- 270
                      **************************  ****************                

consensus_2935#0      GAGAGCAACAAATTTCCCGGAACTGCTGTGTAAAATTCTCGTGCACAAGCAAACAAAACA 406
consensus_2935#1      ------------------------------------------------------------
                                                                                  

consensus_2935#0      AAGATGGCAAAATTAGACGATAACAGACAACAAAACGCAAACGCAAAAACGTAACGCAAC 466
consensus_2935#1      ------------------------------------------------------------
                                                                                  

consensus_2935#0      TTTTAGATGATAGTTTTAAACAAACCGAACAAACAGCAAACGCGCAGCAGTAGAAAGGCA 526
consensus_2935#1      ------------------------------------------------------------
                                                                                  

consensus_2935#0      AGAAAAGAAGGGTAAATCAAAAAAGAAAAACGATAACCCATCCTCCACACTCACAGCTCA 586
consensus_2935#1      ------------------------------------------------------------
                                                                                  

consensus_2935#0      AAGCACAGCAACAGATCAGACAAGCAAAATGAAGGTAACAGGTCAAAACTTCTTACAGCA 646
consensus_2935#1      ------------------------------------------------------------
                                                                                  

consensus_2935#0      AAAATCCTAAAACACTTTAAACCGAAAGAAGCAAAAGGAAGCAAAC 692
consensus_2935#1      ----------------------------------------------