cluster # 2942

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Anopheles gambiae
cluster # 2942 cluster # 2942 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2942#0 length = 891 sequences # 1

consensus_2942#1 length = 822 sequences # 1

consensusID : consensus_2942#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 891
fasta sequence

                              [GCAAGAATCNCGCACGAGGGAAACATTTGAACGCATTTTACCATCGTCTGGGAGATATTCGGGTCGTGGATTGTGTGCAAACGTAAATAACACATGATGGCAGCAAAGAGAAAGCAGGTGGTGCGCCATGTTGTACTGACATGCGTCATACTGTTGGCATTGCTAGCAGAGGAGACTGTTGCCAAACGCTACGAAGAGATTGGAAACCGACATCAGGGCGACATAGTGCTGTCCGATCTACAGTCCGATGCGGCTAATGTCGGTGCCACACAGATCGTACAGGATGCCTTTAGGTGGGTTAAGGGCATTGTACCGTACGAGATTTCACCGGAGTTCTCTCAACTCGAGATGAATCAGATCAAGTACGCGATGGATAGGATTGCGTCGTACAGCTGTGTTCGGTTTGGTCCGAGGAGTCCCACAGACAGGCAGTATCTCAACATTACCGCCAGTCCGACTGGATGCTGGGCAACGCTTGGTATGAATTTACTGGCCAATCAGCTTAATCTGCAGCGAGAAGGATGTCTCGAAACAGGCGTTATTATGCACCAGCTTCTGCATGTGCTCGGCCTAACGCACCCACAGTCCCGCCCGGATCGTGACTTTTACGTACTGGTGGAGCAGGATGCGATCGATACGAGTCTGAAGAAAAATCTGGACAAATATCAGAAGGGTGTGATCGAGGGAACTTTTGGGCAATACCCGTACGATTAACGAAAAGCATTCTTCACTGTCACAGTCGGATGCCGTTCCGGGGTTCGGTCGGGCATCGAATTCGAGGCGANCCGTCGTTCCATTGGGTTGATGGTTGAGATCGGTCAACGAAACGAGTTANGCCTGAAGGATTTGCGGCAAAGGCTGAACAAGGANTTCGACTACCAAGTACTGGTC]

[+] EMBL BX467451             [GCAAGAATCNCGCACGAGGGAAACATTTGAACGCATTTTACCATCGTCTGGGAGATATTCGGGTCGTGGATTGTGTGCAAACGTAAATAACACATGATGGCAGCAAAGAGAAAGCAGGTGGTGCGCCATGTTGTACTGACATGCGTCATACTGTTGGCATTGCTAGCAGAGGAGACTGTTGCCAAACGCTACGAAGAGATTGGAAACCGACATCAGGGCGACATAGTGCTGTCCGATCTACAGTCCGATGCGGCTAATGTCGGTGCCACACAGATCGTACAGGATGCCTTTAGGTGGGTTAAGGGCATTGTACCGTACGAGATTTCACCGGAGTTCTCTCAACTCGAGATGAATCAGATCAAGTACGCGATGGATAGGATTGCGTCGTACAGCTGTGTTCGGTTTGGTCCGAGGAGTCCCACAGACAGGCAGTATCTCAACATTACCGCCAGTCCGACTGGATGCTGGGCAACGCTTGGTATGAATTTACTGGCCAATCAGCTTAATCTGCAGCGAGAAGGATGTCTCGAAACAGGCGTTATTATGCACCAGCTTCTGCATGTGCTCGGCCTAACGCACCCACAGTCCCGCCCGGATCGTGACTTTTACGTACTGGTGGAGCAGGATGCGATCGATACGAGTCTGAAGAAAAATCTGGACAAATATCAGAAGGGTGTGATCGAGGGAACTTTTGGGCAATACCCGTACGATTAACGAAAAGCATTCTTCACTGTCACAGTCGGATGCCGTTCCGGGGTTCGGTCGGGCATCGAATTCGAGGCGANCCGTCGTTCCATTGGGTTGATGGTTGAGATCGGTCAACGAAACGAGTTANGCCTGAAGGATTTGCGGCAAAGGCTGAACAAGGANTTCGACTACCAAGTACTGGTC]




>consensus_2942#0
GCAAGAATCNCGCACGAGGGAAACATTTGAACGCATTTTACCATCGTCTGGGAGATATTC
GGGTCGTGGATTGTGTGCAAACGTAAATAACACATGATGGCAGCAAAGAGAAAGCAGGTG
GTGCGCCATGTTGTACTGACATGCGTCATACTGTTGGCATTGCTAGCAGAGGAGACTGTT
GCCAAACGCTACGAAGAGATTGGAAACCGACATCAGGGCGACATAGTGCTGTCCGATCTA
CAGTCCGATGCGGCTAATGTCGGTGCCACACAGATCGTACAGGATGCCTTTAGGTGGGTT
AAGGGCATTGTACCGTACGAGATTTCACCGGAGTTCTCTCAACTCGAGATGAATCAGATC
AAGTACGCGATGGATAGGATTGCGTCGTACAGCTGTGTTCGGTTTGGTCCGAGGAGTCCC
ACAGACAGGCAGTATCTCAACATTACCGCCAGTCCGACTGGATGCTGGGCAACGCTTGGT
ATGAATTTACTGGCCAATCAGCTTAATCTGCAGCGAGAAGGATGTCTCGAAACAGGCGTT
ATTATGCACCAGCTTCTGCATGTGCTCGGCCTAACGCACCCACAGTCCCGCCCGGATCGT
GACTTTTACGTACTGGTGGAGCAGGATGCGATCGATACGAGTCTGAAGAAAAATCTGGAC
AAATATCAGAAGGGTGTGATCGAGGGAACTTTTGGGCAATACCCGTACGATTAACGAAAA
GCATTCTTCACTGTCACAGTCGGATGCCGTTCCGGGGTTCGGTCGGGCATCGAATTCGAG
GCGANCCGTCGTTCCATTGGGTTGATGGTTGAGATCGGTCAACGAAACGAGTTANGCCTG
AAGGATTTGCGGCAAAGGCTGAACAAGGANTTCGACTACCAAGTACTGGTC

consensusID : consensus_2942#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 822
fasta sequence

                              [GAAATTCCCCGAGGTTTGAACGCATTTACCATCGTCTGGGAGATATTCGGGTCGTGGATTGTGTGCAAACGTAAATAACACATGATGGCAGCAAAGAGAAAGCAGGTGGTGCGCCATGTTGTACTGACATGCGTCATACTGTTGGCATTGCTAGCAGAGGAGACTGTTGCCAAACGCTACGAAGAGATTGGAAACCGACATCAGGGCGACATAGTGCTGTCCGATCTACAGTCCGATGCGGCTAATGTCGGTGCCACACAGATCGTACAGGATGCCTTTAGGTGGGTTAAGGGCATTGTACCGTACGAGATTTCACCGGAGTTCTCTCAACTCGAGATGAATTCAGAAATCAAGTACGCGATGGATAGGATTGCGTCGTACAGCTGTGTTCGGTTTGGTCCGAGGAGTCCCACAGACAGGCAGTATCTCAACATTACCGCCAGTCCGACTGGATGCTGGGCAACGCTTGGTATGAATTTACTGGCCAATCAGCTTAATCTGCAGCGAGAAGGATGTCTCGAAACAGGCGTTATTATGCACCAGCTTCTGCATGTGCTCGGCCTAACGCACCCACAGTCCCGCCCGGATCGTGACCTTTTACGTACTGGTGGAGCAGATGCGATCGATACGAGTCTGACAGAACAAATCTGGGACAAACTATTCCGCAACGGTGTGATCGCAGGGACTTTGGCATACCNGAACGAATACGAAAGCATTCTACACAGGCAAACGAAGCANTCGGCGACGGCATCAATCAGACGACACCGACGTACCNTGGGNTNAGNTGAAACCGGCCACAAGACAGATTAGCCTAGANTTCCC]

[+] EMBL AL932528             [GAAATTCCCCGAGGTTTGAACGCATTTACCATCGTCTGGGAGATATTCGGGTCGTGGATTGTGTGCAAACGTAAATAACACATGATGGCAGCAAAGAGAAAGCAGGTGGTGCGCCATGTTGTACTGACATGCGTCATACTGTTGGCATTGCTAGCAGAGGAGACTGTTGCCAAACGCTACGAAGAGATTGGAAACCGACATCAGGGCGACATAGTGCTGTCCGATCTACAGTCCGATGCGGCTAATGTCGGTGCCACACAGATCGTACAGGATGCCTTTAGGTGGGTTAAGGGCATTGTACCGTACGAGATTTCACCGGAGTTCTCTCAACTCGAGATGAATTCAGAAATCAAGTACGCGATGGATAGGATTGCGTCGTACAGCTGTGTTCGGTTTGGTCCGAGGAGTCCCACAGACAGGCAGTATCTCAACATTACCGCCAGTCCGACTGGATGCTGGGCAACGCTTGGTATGAATTTACTGGCCAATCAGCTTAATCTGCAGCGAGAAGGATGTCTCGAAACAGGCGTTATTATGCACCAGCTTCTGCATGTGCTCGGCCTAACGCACCCACAGTCCCGCCCGGATCGTGACCTTTTACGTACTGGTGGAGCAGATGCGATCGATACGAGTCTGACAGAACAAATCTGGGACAAACTATTCCGCAACGGTGTGATCGCAGGGACTTTGGCATACCNGAACGAATACGAAAGCATTCTACACAGGCAAACGAAGCANTCGGCGACGGCATCAATCAGACGACACCGACGTACCNTGGGNTNAGNTGAAACCGGCCACAAGACAGATTAGCCTAGANTTCCC]




>consensus_2942#1
GAAATTCCCCGAGGTTTGAACGCATTTACCATCGTCTGGGAGATATTCGGGTCGTGGATT
GTGTGCAAACGTAAATAACACATGATGGCAGCAAAGAGAAAGCAGGTGGTGCGCCATGTT
GTACTGACATGCGTCATACTGTTGGCATTGCTAGCAGAGGAGACTGTTGCCAAACGCTAC
GAAGAGATTGGAAACCGACATCAGGGCGACATAGTGCTGTCCGATCTACAGTCCGATGCG
GCTAATGTCGGTGCCACACAGATCGTACAGGATGCCTTTAGGTGGGTTAAGGGCATTGTA
CCGTACGAGATTTCACCGGAGTTCTCTCAACTCGAGATGAATTCAGAAATCAAGTACGCG
ATGGATAGGATTGCGTCGTACAGCTGTGTTCGGTTTGGTCCGAGGAGTCCCACAGACAGG
CAGTATCTCAACATTACCGCCAGTCCGACTGGATGCTGGGCAACGCTTGGTATGAATTTA
CTGGCCAATCAGCTTAATCTGCAGCGAGAAGGATGTCTCGAAACAGGCGTTATTATGCAC
CAGCTTCTGCATGTGCTCGGCCTAACGCACCCACAGTCCCGCCCGGATCGTGACCTTTTA
CGTACTGGTGGAGCAGATGCGATCGATACGAGTCTGACAGAACAAATCTGGGACAAACTA
TTCCGCAACGGTGTGATCGCAGGGACTTTGGCATACCNGAACGAATACGAAAGCATTCTA
CACAGGCAAACGAAGCANTCGGCGACGGCATCAATCAGACGACACCGACGTACCNTGGGN
TNAGNTGAAACCGGCCACAAGACAGATTAGCCTAGANTTCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2942#0      GCAAGAATCNCGCACGAGGGAAACATTTGAACGCATTTTACCATCGTCTGGGAGATATTC 60
consensus_2942#1      ----GAAATTCCC-CGAGG------TTTGAACGCATTT-ACCATCGTCTGGGAGATATTC 48
                          ***   * * *****      ************* *********************

consensus_2942#0      GGGTCGTGGATTGTGTGCAAACGTAAATAACACATGATGGCAGCAAAGAGAAAGCAGGTG 120
consensus_2942#1      GGGTCGTGGATTGTGTGCAAACGTAAATAACACATGATGGCAGCAAAGAGAAAGCAGGTG 108
                      ************************************************************

consensus_2942#0      GTGCGCCATGTTGTACTGACATGCGTCATACTGTTGGCATTGCTAGCAGAGGAGACTGTT 180
consensus_2942#1      GTGCGCCATGTTGTACTGACATGCGTCATACTGTTGGCATTGCTAGCAGAGGAGACTGTT 168
                      ************************************************************

consensus_2942#0      GCCAAACGCTACGAAGAGATTGGAAACCGACATCAGGGCGACATAGTGCTGTCCGATCTA 240
consensus_2942#1      GCCAAACGCTACGAAGAGATTGGAAACCGACATCAGGGCGACATAGTGCTGTCCGATCTA 228
                      ************************************************************

consensus_2942#0      CAGTCCGATGCGGCTAATGTCGGTGCCACACAGATCGTACAGGATGCCTTTAGGTGGGTT 300
consensus_2942#1      CAGTCCGATGCGGCTAATGTCGGTGCCACACAGATCGTACAGGATGCCTTTAGGTGGGTT 288
                      ************************************************************

consensus_2942#0      AAGGGCATTGTACCGTACGAGATTTCACCGGAGTTCTCTCAACTCGAGATGAATC---AG 357
consensus_2942#1      AAGGGCATTGTACCGTACGAGATTTCACCGGAGTTCTCTCAACTCGAGATGAATTCAGAA 348
                      ******************************************************    * 

consensus_2942#0      ATCAAGTACGCGATGGATAGGATTGCGTCGTACAGCTGTGTTCGGTTTGGTCCGAGGAGT 417
consensus_2942#1      ATCAAGTACGCGATGGATAGGATTGCGTCGTACAGCTGTGTTCGGTTTGGTCCGAGGAGT 408
                      ************************************************************

consensus_2942#0      CCCACAGACAGGCAGTATCTCAACATTACCGCCAGTCCGACTGGATGCTGGGCAACGCTT 477
consensus_2942#1      CCCACAGACAGGCAGTATCTCAACATTACCGCCAGTCCGACTGGATGCTGGGCAACGCTT 468
                      ************************************************************

consensus_2942#0      GGTATGAATTTACTGGCCAATCAGCTTAATCTGCAGCGAGAAGGATGTCTCGAAACAGGC 537
consensus_2942#1      GGTATGAATTTACTGGCCAATCAGCTTAATCTGCAGCGAGAAGGATGTCTCGAAACAGGC 528
                      ************************************************************

consensus_2942#0      GTTATTATGCACCAGCTTCTGCATGTGCTCGGCCTAACGCACCCACAGTCCCGCCCGGAT 597
consensus_2942#1      GTTATTATGCACCAGCTTCTGCATGTGCTCGGCCTAACGCACCCACAGTCCCGCCCGGAT 588
                      ************************************************************

consensus_2942#0      CGTGAC-TTTTACGTACTGGTGGAGCAGGATGCGATCGATACGAGTCTGA-AGAA-AAAT 654
consensus_2942#1      CGTGACCTTTTACGTACTGGTGGAGCAG-ATGCGATCGATACGAGTCTGACAGAACAAAT 647
                      ****** ********************* ********************* **** ****

consensus_2942#0      CTGG-ACAAA---TATCAGAAGGGTGTGATCGAGGGAACTTTTGGGCAATACCCGTACGA 710
consensus_2942#1      CTGGGACAAACTATTCCGCAACGGTGTGATCGCAGGGACTTT--GGCA-TACCNGAACGA 704
                      **** *****   *  *  ** **********  ** *****  **** **** * ****

consensus_2942#0      TTAACGAAAAGCATTCTTCACTGTCACAGTCGGATGCCGTTCCGGGGTTCGGTCGGGCAT 770
consensus_2942#1      ATAC--GAAAGCATTCTACACAG--GCAAACGAAG--CANTCGGCGAC-------GGCAT 751
                       **    ********** *** *   **  ** *   *  ** * *         *****

consensus_2942#0      CGAATTCGAGGCGANCCGTCGTTCCATTGGGTTGATGGTTGAGATCGGTCAACGAAACGA 830
consensus_2942#1      CAA--TCAGACGACACCGACGTACCNTGGGNTNA---GNTGAAACCGGCCA-CAAGACAG 805
                      * *  **        *** *** ** * ** *     * *** * *** ** * * **  

consensus_2942#0      GTTANGCCTGAAGGATTTGCGGCAAAGGCTGAACAAGGANTTCGACTACCAAGTACTGGT 890
consensus_2942#1      ATTAGCCT---AGANTTCCC---------------------------------------- 822
                       ***  *    **  **  *                                        

consensus_2942#0      C 891
consensus_2942#1      -