cluster # 2947

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Anopheles gambiae
cluster # 2947 cluster # 2947 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2947#0 length = 386 sequences # 1

consensus_2947#1 length = 381 sequences # 1

consensusID : consensus_2947#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 386
fasta sequence

                              [TGGCGGACATTGCGATCGGGCTGATGCTAGCCGCGGCCCGGCGGTTCCACGAAGGTCGGCTCAAGATTGCCACCGGTGAGTGGGAAATGCGACCACAGTGGATGTTGGGCCAGGATGTTCCCGGATCGACGGTTGGCATCGTAGGGTTCGGCGGCATCGGGACAAACGATACTGAACGTCTGAAAGGTTCGACATTTGGACGGTGTCTGTACCCCGGTAAGGAACCAGAAACCCGAACCTTGAATCTGGGTTGGAACATCGAAGTTCAATTTGGCAACCCCTGCTGGCGGGAAAAGCGATTTCCTAATTCATCCCCCCTGGCCCCCTTAACGGGGCCAAAACGGCCAAGGAATGGTTCAATTCCCCGAAACCCCCCCCCCCTTGAA]

[+] EMBL BM657757             [TGGCGGACATTGCGATCGGGCTGATGCTAGCCGCGGCCCGGCGGTTCCACGAAGGTCGGCTCAAGATTGCCACCGGTGAGTGGGAAATGCGACCACAGTGGATGTTGGGCCAGGATGTTCCCGGATCGACGGTTGGCATCGTAGGGTTCGGCGGCATCGGGACAAACGATACTGAACGTCTGAAAGGTTCGACATTTGGACGGTGTCTGTACCCCGGTAAGGAACCAGAAACCCGAACCTTGAATCTGGGTTGGAACATCGAAGTTCAATTTGGCAACCCCTGCTGGCGGGAAAAGCGATTTCCTAATTCATCCCCCCTGGCCCCCTTAACGGGGCCAAAACGGCCAAGGAATGGTTCAATTCCCCGAAACCCCCCCCCCCTTGAA]




>consensus_2947#0
TGGCGGACATTGCGATCGGGCTGATGCTAGCCGCGGCCCGGCGGTTCCACGAAGGTCGGC
TCAAGATTGCCACCGGTGAGTGGGAAATGCGACCACAGTGGATGTTGGGCCAGGATGTTC
CCGGATCGACGGTTGGCATCGTAGGGTTCGGCGGCATCGGGACAAACGATACTGAACGTC
TGAAAGGTTCGACATTTGGACGGTGTCTGTACCCCGGTAAGGAACCAGAAACCCGAACCT
TGAATCTGGGTTGGAACATCGAAGTTCAATTTGGCAACCCCTGCTGGCGGGAAAAGCGAT
TTCCTAATTCATCCCCCCTGGCCCCCTTAACGGGGCCAAAACGGCCAAGGAATGGTTCAA
TTCCCCGAAACCCCCCCCCCCTTGAA

consensusID : consensus_2947#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [TGGCGGACATTGCGATCGGGCTGATGCTAGCCGCGGCCCGGCGGTTCCACGAAGGTCGGCTCAAGATTGCCACCGGTGAGTGGGAAATGCGACCACAGTGGATGTTGGGCCAGGATGTTCCCGGATCGACGGTTGGCATCGTAGGGTTCGGCGGCATCGGACAAACGATACTGAAGCGTCTGAAAGGGTTCGACATTGGACGGTGTCTGTACACGGGTAGGAGCAGGAAGCCGGAAGCTGATCTGGTCGGAGCGTCGTACGTCGATCTGGCAACGCTGCTGCGGGAAAGCGATTTCGTATTCATCGCCTGCCCGCTGACGGGCGAAACGGCAAGGATGTTCAATCGCGAAACGCTCGCGCTGATGAAACGGTCGAGCGTGT]

[+] EMBL BX618346             [TGGCGGACATTGCGATCGGGCTGATGCTAGCCGCGGCCCGGCGGTTCCACGAAGGTCGGCTCAAGATTGCCACCGGTGAGTGGGAAATGCGACCACAGTGGATGTTGGGCCAGGATGTTCCCGGATCGACGGTTGGCATCGTAGGGTTCGGCGGCATCGGACAAACGATACTGAAGCGTCTGAAAGGGTTCGACATTGGACGGTGTCTGTACACGGGTAGGAGCAGGAAGCCGGAAGCTGATCTGGTCGGAGCGTCGTACGTCGATCTGGCAACGCTGCTGCGGGAAAGCGATTTCGTATTCATCGCCTGCCCGCTGACGGGCGAAACGGCAAGGATGTTCAATCGCGAAACGCTCGCGCTGATGAAACGGTCGAGCGTGT]




>consensus_2947#1
TGGCGGACATTGCGATCGGGCTGATGCTAGCCGCGGCCCGGCGGTTCCACGAAGGTCGGC
TCAAGATTGCCACCGGTGAGTGGGAAATGCGACCACAGTGGATGTTGGGCCAGGATGTTC
CCGGATCGACGGTTGGCATCGTAGGGTTCGGCGGCATCGGACAAACGATACTGAAGCGTC
TGAAAGGGTTCGACATTGGACGGTGTCTGTACACGGGTAGGAGCAGGAAGCCGGAAGCTG
ATCTGGTCGGAGCGTCGTACGTCGATCTGGCAACGCTGCTGCGGGAAAGCGATTTCGTAT
TCATCGCCTGCCCGCTGACGGGCGAAACGGCAAGGATGTTCAATCGCGAAACGCTCGCGC
TGATGAAACGGTCGAGCGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2947#0      TGGCGGACATTGCGATCGGGCTGATGCTAGCCGCGGCCCGGCGGTTCCACGAAGGTCGGC 60
consensus_2947#1      TGGCGGACATTGCGATCGGGCTGATGCTAGCCGCGGCCCGGCGGTTCCACGAAGGTCGGC 60
                      ************************************************************

consensus_2947#0      TCAAGATTGCCACCGGTGAGTGGGAAATGCGACCACAGTGGATGTTGGGCCAGGATGTTC 120
consensus_2947#1      TCAAGATTGCCACCGGTGAGTGGGAAATGCGACCACAGTGGATGTTGGGCCAGGATGTTC 120
                      ************************************************************

consensus_2947#0      CCGGATCGACGGTTGGCATCGTAGGGTTCGGCGGCATCGGGACAAACGATACTGAA-CGT 179
consensus_2947#1      CCGGATCGACGGTTGGCATCGTAGGGTTCGGCGGCATCGG-ACAAACGATACTGAAGCGT 179
                      **************************************** *************** ***

consensus_2947#0      CTGAAAGG-TTCGACATTTGGACGGTGTCTGTACCCCGGTAAGGAACCAGAAACCCGAAC 238
consensus_2947#1      CTGAAAGGGTTCGACATT-GGACGGTGTCTGTACACGGGTA-GGAGCAGGAAGCCGGAAG 237
                      ******** ********* *************** * **** *** *  *** ** *** 

consensus_2947#0      CTTGAATCTGGGTTGGAACATCGAAGTTCAATTTGGCAACCCCTGCTGGCGGGAAAAGCG 298
consensus_2947#1      CT--GATCTGG-TCGGAGCGTCGTACGTCGATCTGGCAACGC-TGCTGC--GGGAAAGCG 291
                      **   ****** * *** * *** *  ** ** ******* * *****   ** ******

consensus_2947#0      ATTTCCTAATTCATCCCCCCTGGCCCCCTTAACGGGGCCAAAACGGCCAAGGAATGGTTC 358
consensus_2947#1      ATTTCGTA-TTCATCGCCTG----CCCGCTGACGGG--CGAAACGGC--AAGGATG-TTC 341
                      ***** ** ****** **      ***  * *****  * *******  * * *** ***

consensus_2947#0      AATTCCCCGAAACCCCCCCCCCCTTGAA-------------- 386
consensus_2947#1      AAT--CGCGAAACGCTCGCGCTGATGAAACGGTCGAGCGTGT 381
                      ***  * ****** * * * *   ****