cluster # 2954

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Anopheles gambiae
cluster # 2954 cluster # 2954 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2954#0 length = 671 sequences # 1

consensus_2954#1 length = 192 sequences # 1

consensusID : consensus_2954#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence

                              [CCGCGTCCATTCAGTGTGCCGAAGCCTGCCAACGATCTAGTGCCGCCGCGCAAGGAGTACGTATTCTACGATGACGCGACCACACAAGGTCCTCCGATCTACTACCAGTGGAAGTGGTCGGTTCCATCGTTCGGCCTAGATCCACCCGGTCTCGAAGCACCGGCAGCACCAGGCGCACCGAGCGTGGAAGGTAGTACACTCGATGGGCTGCTGCCACCGGTAAGCAACCGCAAGGTGGACAATGACGCAGCAGACGATCGCCTGAACGCCCAACTAAACCCAGCCTCCCAGGAGCACCTAGCGCACGATGGGGGTCAGAGCCGCGAACACAACCAGACGGCACGTTCCATCTCCTCCGAGACGGGCAATCTCGGCGAGAATCGGGTGGAGGTGGAAAATAAACTGGTAGTGCCGCTGCCGCAGCACAACTACCTGCAACTGCGCCAACAGTTTGCCATCCCGGACTTTACCTTCCCGCTGGACGGTGCGGCCAAGGGGGGTCAGTACGCCAACGTCGAGGCAGTTGATTCGTTCCAGGTGAAGATTCCGAGCGATGCGTCATCGCGCGGCAGTGCGCCGCCCGGTGTCAATGCGCGAGCGTGGTACGGGGAAAACGCACGATGTCCCGAATGCCATCCGGGGTTCCTGCGACCGGGCAGTTGTGAACCGTG]

[+] EMBL BM578161             [CCGCGTCCATTCAGTGTGCCGAAGCCTGCCAACGATCTAGTGCCGCCGCGCAAGGAGTACGTATTCTACGATGACGCGACCACACAAGGTCCTCCGATCTACTACCAGTGGAAGTGGTCGGTTCCATCGTTCGGCCTAGATCCACCCGGTCTCGAAGCACCGGCAGCACCAGGCGCACCGAGCGTGGAAGGTAGTACACTCGATGGGCTGCTGCCACCGGTAAGCAACCGCAAGGTGGACAATGACGCAGCAGACGATCGCCTGAACGCCCAACTAAACCCAGCCTCCCAGGAGCACCTAGCGCACGATGGGGGTCAGAGCCGCGAACACAACCAGACGGCACGTTCCATCTCCTCCGAGACGGGCAATCTCGGCGAGAATCGGGTGGAGGTGGAAAATAAACTGGTAGTGCCGCTGCCGCAGCACAACTACCTGCAACTGCGCCAACAGTTTGCCATCCCGGACTTTACCTTCCCGCTGGACGGTGCGGCCAAGGGGGGTCAGTACGCCAACGTCGAGGCAGTTGATTCGTTCCAGGTGAAGATTCCGAGCGATGCGTCATCGCGCGGCAGTGCGCCGCCCGGTGTCAATGCGCGAGCGTGGTACGGGGAAAACGCACGATGTCCCGAATGCCATCCGGGGTTCCTGCGACCGGGCAGTTGTGAACCGTG]




>consensus_2954#0
CCGCGTCCATTCAGTGTGCCGAAGCCTGCCAACGATCTAGTGCCGCCGCGCAAGGAGTAC
GTATTCTACGATGACGCGACCACACAAGGTCCTCCGATCTACTACCAGTGGAAGTGGTCG
GTTCCATCGTTCGGCCTAGATCCACCCGGTCTCGAAGCACCGGCAGCACCAGGCGCACCG
AGCGTGGAAGGTAGTACACTCGATGGGCTGCTGCCACCGGTAAGCAACCGCAAGGTGGAC
AATGACGCAGCAGACGATCGCCTGAACGCCCAACTAAACCCAGCCTCCCAGGAGCACCTA
GCGCACGATGGGGGTCAGAGCCGCGAACACAACCAGACGGCACGTTCCATCTCCTCCGAG
ACGGGCAATCTCGGCGAGAATCGGGTGGAGGTGGAAAATAAACTGGTAGTGCCGCTGCCG
CAGCACAACTACCTGCAACTGCGCCAACAGTTTGCCATCCCGGACTTTACCTTCCCGCTG
GACGGTGCGGCCAAGGGGGGTCAGTACGCCAACGTCGAGGCAGTTGATTCGTTCCAGGTG
AAGATTCCGAGCGATGCGTCATCGCGCGGCAGTGCGCCGCCCGGTGTCAATGCGCGAGCG
TGGTACGGGGAAAACGCACGATGTCCCGAATGCCATCCGGGGTTCCTGCGACCGGGCAGT
TGTGAACCGTG

consensusID : consensus_2954#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 192
fasta sequence

                              [GGGCGGCGGCCACCGGAAAGTAACCGCAAGGGGGACAATGACGCAGCAGACGAACGCCGGAACGCCCAACTAAACCCAGCCCCCCAGGAGCACCCAGCGCACGAGGGGGGCCAGAGCCGCGAACACAACCAGACGGCACGTTCCATCTCCCCCGAGACGGGCAATCCCGGCGAGAATCGGGGGGAGGTGGAA]

[+] EMBL BX609732             [GGGCGGCGGCCACCGGAAAGTAACCGCAAGGGGGACAATGACGCAGCAGACGAACGCCGGAACGCCCAACTAAACCCAGCCCCCCAGGAGCACCCAGCGCACGAGGGGGGCCAGAGCCGCGAACACAACCAGACGGCACGTTCCATCTCCCCCGAGACGGGCAATCCCGGCGAGAATCGGGGGGAGGTGGAA]




>consensus_2954#1
GGGCGGCGGCCACCGGAAAGTAACCGCAAGGGGGACAATGACGCAGCAGACGAACGCCGG
AACGCCCAACTAAACCCAGCCCCCCAGGAGCACCCAGCGCACGAGGGGGGCCAGAGCCGC
GAACACAACCAGACGGCACGTTCCATCTCCCCCGAGACGGGCAATCCCGGCGAGAATCGG
GGGGAGGTGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2954#0      CCGCGTCCATTCAGTGTGCCGAAGCCTGCCAACGATCTAGTGCCGCCGCGCAAGGAGTAC 60
consensus_2954#1      ------------------------------------------------------------
                                                                                  

consensus_2954#0      GTATTCTACGATGACGCGACCACACAAGGTCCTCCGATCTACTACCAGTGGAAGTGGTCG 120
consensus_2954#1      ------------------------------------------------------------
                                                                                  

consensus_2954#0      GTTCCATCGTTCGGCCTAGATCCACCCGGTCTCGAAGCACCGGCAGCACCAGGCGCACCG 180
consensus_2954#1      ------------------------------------------------------------
                                                                                  

consensus_2954#0      AGCGTGGAAGGTAGTACACTCGATGGGCTGCTGCCACCGGTAAGCAACCGCAAGGTGGAC 240
consensus_2954#1      ------------------------GGGCGGCGGCCACCGGAAAGTAACCGCAAGGGGGAC 36
                                              **** ** ******** *** ********** ****

consensus_2954#0      AATGACGCAGCAGACGATCGCCTGAACGCCCAACTAAACCCAGCCTCCCAGGAGCACCTA 300
consensus_2954#1      AATGACGCAGCAGACGAACGCCGGAACGCCCAACTAAACCCAGCCCCCCAGGAGCACCCA 96
                      ***************** **** ********************** ************ *

consensus_2954#0      GCGCACGATGGGGGTCAGAGCCGCGAACACAACCAGACGGCACGTTCCATCTCCTCCGAG 360
consensus_2954#1      GCGCACGAGGGGGGCCAGAGCCGCGAACACAACCAGACGGCACGTTCCATCTCCCCCGAG 156
                      ******** ***** *************************************** *****

consensus_2954#0      ACGGGCAATCTCGGCGAGAATCGGGTGGAGGTGGAAAATAAACTGGTAGTGCCGCTGCCG 420
consensus_2954#1      ACGGGCAATCCCGGCGAGAATCGGGGGGAGGTGGAA------------------------ 192
                      ********** ************** **********                        

consensus_2954#0      CAGCACAACTACCTGCAACTGCGCCAACAGTTTGCCATCCCGGACTTTACCTTCCCGCTG 480
consensus_2954#1      ------------------------------------------------------------
                                                                                  

consensus_2954#0      GACGGTGCGGCCAAGGGGGGTCAGTACGCCAACGTCGAGGCAGTTGATTCGTTCCAGGTG 540
consensus_2954#1      ------------------------------------------------------------
                                                                                  

consensus_2954#0      AAGATTCCGAGCGATGCGTCATCGCGCGGCAGTGCGCCGCCCGGTGTCAATGCGCGAGCG 600
consensus_2954#1      ------------------------------------------------------------
                                                                                  

consensus_2954#0      TGGTACGGGGAAAACGCACGATGTCCCGAATGCCATCCGGGGTTCCTGCGACCGGGCAGT 660
consensus_2954#1      ------------------------------------------------------------
                                                                                  

consensus_2954#0      TGTGAACCGTG 671
consensus_2954#1      -----------