cluster # 2962

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Anopheles gambiae
cluster # 2962 cluster # 2962 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2962#0 length = 565 sequences # 1

consensus_2962#1 length = 522 sequences # 1

consensusID : consensus_2962#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [AAGAATCCCCGAGGTTTATACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGGTGGACTGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCTGAGCGGCTCTCGCTGAACCGCGAAAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATATCGATGGCGCAAAAACGACCGCCAGCTAACTGACTGTGCCTGACTGGCTGAACGATGCGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTGTAAAACAAAAAAAACAAAACAACAANAAAAACACA]

[+] EMBL AL932062             [AAGAATCCCCGAGGTTTATACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGGTGGACTGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCTGAGCGGCTCTCGCTGAACCGCGAAAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATATCGATGGCGCAAAAACGACCGCCAGCTAACTGACTGTGCCTGACTGGCTGAACGATGCGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTGTAAAACAAAAAAAACAAAACAACAANAAAAACACA]




>consensus_2962#0
AAGAATCCCCGAGGTTTATACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTC
AGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGC
AGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGG
TGGACTGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGAT
GCGGCCGGCAAGCTCCAGAACGACTACGCCATCTGAGCGGCTCTCGCTGAACCGCGAAAA
GTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTG
CGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATA
TCGATGGCGCAAAAACGACCGCCAGCTAACTGACTGTGCCTGACTGGCTGAACGATGCGT
CGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTGTAAAACAAAA
AAAACAAAACAACAANAAAAACACA

consensusID : consensus_2962#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [CCGTGAAGATGAAGCTACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGGTGGACGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCGAGCGGCTCTCGCTGAACCGCGAAAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATATCGATGGCGCAAAAACGACCGCCAGCTAACGACGGCCGACGGCTGAACGATGCGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTTGT]

[+] EMBL BM598155             [CCGTGAAGATGAAGCTACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGGTGGACGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCGAGCGGCTCTCGCTGAACCGCGAAAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATATCGATGGCGCAAAAACGACCGCCAGCTAACGACGGCCGACGGCTGAACGATGCGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTTGT]




>consensus_2962#1
CCGTGAAGATGAAGCTACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAGCTCAGC
CACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGGAGCAGC
ACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCAAGGTGG
ACGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATGGATGCGG
CCGGCAAGCTCCAGAACGACTACGCCATCGAGCGGCTCTCGCTGAACCGCGAAAAGTCGA
AGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAGCTGCGAGA
CGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTGATATCGAT
GGCGCAAAAACGACCGCCAGCTAACGACGGCCGACGGCTGAACGATGCGTCGTGGCCAGT
CGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2962#0      AAGAATCCCCGAGGTTTA---TACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAG 57
consensus_2962#1      ------CCGTGAAGATGAAGCTACTGTTCGCTACCGTTCTGCTTGCTGTCTGCGCTGCAG 54
                            **  ** * * *   ***************************************

consensus_2962#0      CTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGG 117
consensus_2962#1      CTCAGCCACTCACAGACGACCAGATGAAGAAGGCGGAAGGGTTCGCGCTCGGCTGTCTGG 114
                      ************************************************************

consensus_2962#0      AGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCA 177
consensus_2962#1      AGCAGCACAAGGGTCTCAACAAGGAGCATCTGGTGCTGCTGCGCGACGGTGACTTCTCCA 174
                      ************************************************************

consensus_2962#0      AGGTGGACTGCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATG 237
consensus_2962#1      AGGTGGAC-GCCGACACGAAGTGTTTCCTGCGCTGCTTCCTGCAGCAGGCCAACTTTATG 233
                      ******** ***************************************************

consensus_2962#0      GATGCGGCCGGCAAGCTCCAGAACGACTACGCCATCTGAGCGGCTCTCGCTGAACCGCGA 297
consensus_2962#1      GATGCGGCCGGCAAGCTCCAGAACGACTACGCCATC-GAGCGGCTCTCGCTGAACCGCGA 292
                      ************************************ ***********************

consensus_2962#0      AAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAG 357
consensus_2962#1      AAAGTCGAAGGTGGAGGCGCTGGTGAAGAAGTGCAGTGCCGGCGTCGAGGTGGAGGACAG 352
                      ************************************************************

consensus_2962#0      CTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTG 417
consensus_2962#1      CTGCGAGACGGCATTCCGGGCAGTGGAGTGCTACCATCGCGAGAAGGCTTCGCTGCTGTG 412
                      ************************************************************

consensus_2962#0      ATATCGATGGCGCAAAAACGACCGCCAGCTAACTGACTGTGCCTGACTGGCTGAACGATG 477
consensus_2962#1      ATATCGATGGCGCAAAAACGACCGCCAGCTAAC-GAC---GGCCGAC-GGCTGAACGATG 467
                      ********************************* ***   * * *** ************

consensus_2962#0      CGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTT-GTAAAAC 536
consensus_2962#1      CGTCGTGGCCAGTCGTGGTCCCGTTTTGTGAATGTGATTAAATGTGGTTTTTTGT----- 522
                      **************************************************** **     

consensus_2962#0      AAAAAAAACAAAACAACAANAAAAACACA 565
consensus_2962#1      -----------------------------