cluster # 2968

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Anopheles gambiae
cluster # 2968 cluster # 2968 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2968#0 length = 635 sequences # 1

consensus_2968#1 length = 259 sequences # 1

consensusID : consensus_2968#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGACTTGTTGGTGACCGATGGTTGTCATCGGCTCGGGCGCGCTCGAAACGAGCCCCGGGGGCCCATTGTGTGCTGCGTTCTGGACGAGATAACATGCCCGAAAATATCGTCGACGTCGTCGTCGTCGTTGCCGCCGTTGCCTGCTGCTATCGTTTGTCAGTTTAGGGTTTAGGACAAACCGTACCGTACCGTCGCCGTGACGAGACACGCGGGTGTCTGAGTGCTGAGTGAAATACCGAAATTGTGCCGCTCCGGTGACGAACAAAAAAGATAAACTCAAGTGAACGACTGTTTGCGGTCAAAAACGATTCAACAATTCGGAACTCGGCTACCTTGTAGGAAGAGTTGCCACTGGCTCCTTAACTCCGGTGAAGAGTTTAGGGGAGTGAGAGCCTGCCCTCAGCCGGTTGAGGAGCTCTTGTTTTGATCGCACATTTCGTGTCTCGTGTCTCATTCTGTTATTGCCGTGGCCGTCAACGGCCCCACCAACGACTGTGATTATGGATAGTGACAGCCCGGTGCAGGAGTACTACATCAACGACTGAGCCTGGCCACCGCCCTGGGTGCGTGGCGGCAGCCCGGTGTGGAAACTGCAGACACACACCTTC]

[+] EMBL BM583709             [CCGCCCACGCGTCCGCCCACGCGTCCGGGACTTGTTGGTGACCGATGGTTGTCATCGGCTCGGGCGCGCTCGAAACGAGCCCCGGGGGCCCATTGTGTGCTGCGTTCTGGACGAGATAACATGCCCGAAAATATCGTCGACGTCGTCGTCGTCGTTGCCGCCGTTGCCTGCTGCTATCGTTTGTCAGTTTAGGGTTTAGGACAAACCGTACCGTACCGTCGCCGTGACGAGACACGCGGGTGTCTGAGTGCTGAGTGAAATACCGAAATTGTGCCGCTCCGGTGACGAACAAAAAAGATAAACTCAAGTGAACGACTGTTTGCGGTCAAAAACGATTCAACAATTCGGAACTCGGCTACCTTGTAGGAAGAGTTGCCACTGGCTCCTTAACTCCGGTGAAGAGTTTAGGGGAGTGAGAGCCTGCCCTCAGCCGGTTGAGGAGCTCTTGTTTTGATCGCACATTTCGTGTCTCGTGTCTCATTCTGTTATTGCCGTGGCCGTCAACGGCCCCACCAACGACTGTGATTATGGATAGTGACAGCCCGGTGCAGGAGTACTACATCAACGACTGAGCCTGGCCACCGCCCTGGGTGCGTGGCGGCAGCCCGGTGTGGAAACTGCAGACACACACCTTC]




>consensus_2968#0
CCGCCCACGCGTCCGCCCACGCGTCCGGGACTTGTTGGTGACCGATGGTTGTCATCGGCT
CGGGCGCGCTCGAAACGAGCCCCGGGGGCCCATTGTGTGCTGCGTTCTGGACGAGATAAC
ATGCCCGAAAATATCGTCGACGTCGTCGTCGTCGTTGCCGCCGTTGCCTGCTGCTATCGT
TTGTCAGTTTAGGGTTTAGGACAAACCGTACCGTACCGTCGCCGTGACGAGACACGCGGG
TGTCTGAGTGCTGAGTGAAATACCGAAATTGTGCCGCTCCGGTGACGAACAAAAAAGATA
AACTCAAGTGAACGACTGTTTGCGGTCAAAAACGATTCAACAATTCGGAACTCGGCTACC
TTGTAGGAAGAGTTGCCACTGGCTCCTTAACTCCGGTGAAGAGTTTAGGGGAGTGAGAGC
CTGCCCTCAGCCGGTTGAGGAGCTCTTGTTTTGATCGCACATTTCGTGTCTCGTGTCTCA
TTCTGTTATTGCCGTGGCCGTCAACGGCCCCACCAACGACTGTGATTATGGATAGTGACA
GCCCGGTGCAGGAGTACTACATCAACGACTGAGCCTGGCCACCGCCCTGGGTGCGTGGCG
GCAGCCCGGTGTGGAAACTGCAGACACACACCTTC

consensusID : consensus_2968#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence

                              [CCGCGGACGCGTGGGCGTCGCCGTGACGAGACACGCGGGTGTCAGAGTGCTGAGTGACAAACCCGAAATTGGACTGCTCCGGTGTCGAAACTCGCCGAAAAGACAAACTCGAGTGTACGACTGTTTGCGGTCAAAAACAATTCAACAATTCAGAACTCGGCTACCTTGTAGAAAGAGGTGCTACTGACTCCTTTAACTCCGGTGAAGAGTTCAGGGGAGTGAGAGCCTGCCCTCAGCCGGTTGAGGAGCTCTTGTTTGC]

[+] EMBL BM651604             [CCGCGGACGCGTGGGCGTCGCCGTGACGAGACACGCGGGTGTCAGAGTGCTGAGTGACAAACCCGAAATTGGACTGCTCCGGTGTCGAAACTCGCCGAAAAGACAAACTCGAGTGTACGACTGTTTGCGGTCAAAAACAATTCAACAATTCAGAACTCGGCTACCTTGTAGAAAGAGGTGCTACTGACTCCTTTAACTCCGGTGAAGAGTTCAGGGGAGTGAGAGCCTGCCCTCAGCCGGTTGAGGAGCTCTTGTTTGC]




>consensus_2968#1
CCGCGGACGCGTGGGCGTCGCCGTGACGAGACACGCGGGTGTCAGAGTGCTGAGTGACAA
ACCCGAAATTGGACTGCTCCGGTGTCGAAACTCGCCGAAAAGACAAACTCGAGTGTACGA
CTGTTTGCGGTCAAAAACAATTCAACAATTCAGAACTCGGCTACCTTGTAGAAAGAGGTG
CTACTGACTCCTTTAACTCCGGTGAAGAGTTCAGGGGAGTGAGAGCCTGCCCTCAGCCGG
TTGAGGAGCTCTTGTTTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2968#0      CCGCCCACGCGTCCGCCCACGCGTCCGGGACTTGTTGGTGACCGATGGTTGTCATCGGCT 60
consensus_2968#1      ------------------------------------------------------------
                                                                                  

consensus_2968#0      CGGGCGCGCTCGAAACGAGCCCCGGGGGCCCATTGTGTGCTGCGTTCTGGACGAGATAAC 120
consensus_2968#1      ------------------------------------------------------------
                                                                                  

consensus_2968#0      ATGCCCGAAAATATCGTCGACGTCGTCGTCGTCGTTGCCGCCGTTGCCTGCTGCTATCGT 180
consensus_2968#1      ------------------------------------------------------------
                                                                                  

consensus_2968#0      TTGTCAGTTTAGGGTTTAGGACAAACCGTACCGTACCGTCGCCGTGACGAGACACGCGGG 240
consensus_2968#1      ---------------------CCGCGGACGCGTGGGCGTCGCCGTGACGAGACACGCGGG 39
                                           *        *     ************************

consensus_2968#0      TGTCTGAGTGCTGAGTGAAATACC-GAAATTGTGCCGCTCCGGTGACGAA-----CAAAA 294
consensus_2968#1      TGTCAGAGTGCTGAGTGACAAACCCGAAATTGGACTGCTCCGGTGTCGAAACTCGCCGAA 99
                      **** ************* * *** *******  * ********* ****     *  **

consensus_2968#0      AAGATAAACTCAAGTGAACGACTGTTTGCGGTCAAAAACGATTCAACAATTCGGAACTCG 354
consensus_2968#1      AAGACAAACTCGAGTGTACGACTGTTTGCGGTCAAAAACAATTCAACAATTCAGAACTCG 159
                      **** ****** **** ********************** ************ *******

consensus_2968#0      GCTACCTTGTAGGAAGAGTTGCCACTGGCTCCTT-AACTCCGGTGAAGAGTTTAGGGGAG 413
consensus_2968#1      GCTACCTTGTAGAAAGAGGTGCTACTGACTCCTTTAACTCCGGTGAAGAGTTCAGGGGAG 219
                      ************ ***** *** **** ****** ***************** *******

consensus_2968#0      TGAGAGCCTGCCCTCAGCCGGTTGAGGAGCTCTTGTTTTGATCGCACATTTCGTGTCTCG 473
consensus_2968#1      TGAGAGCCTGCCCTCAGCCGGTTGAGGAGCTCTTGTTTGC-------------------- 259
                      **************************************                      

consensus_2968#0      TGTCTCATTCTGTTATTGCCGTGGCCGTCAACGGCCCCACCAACGACTGTGATTATGGAT 533
consensus_2968#1      ------------------------------------------------------------
                                                                                  

consensus_2968#0      AGTGACAGCCCGGTGCAGGAGTACTACATCAACGACTGAGCCTGGCCACCGCCCTGGGTG 593
consensus_2968#1      ------------------------------------------------------------
                                                                                  

consensus_2968#0      CGTGGCGGCAGCCCGGTGTGGAAACTGCAGACACACACCTTC 635
consensus_2968#1      ------------------------------------------