cluster # 2983

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Anopheles gambiae
cluster # 2983 cluster # 2983 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2983#0 length = 564 sequences # 1

consensus_2983#1 length = 510 sequences # 1

consensusID : consensus_2983#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 564
fasta sequence

                              [CCGCCCACGCGTCCGAAATATTAGTTTTGTACCAACTTTAGAACCATCGGGCAACGACAATGTTCTCCAGGAGGATAATGCTGCTAAGGCCGAGGAAACATCGGATACATCAGAAACTCCTCACACAAAACTACCCGAGCCAGATGAAGGAACTTTCGCAGATGAAACGCCCAATGGCATGATGATAGCGAACGACATTGATTACTATTTGCATACGAACGAACCTTCGAAAGAGGGTAGCGAGAAGCTTTCTTCAATAGCAACACCAGCAATGGACCGACCGCCAGCACCTGTTACACCTCCTGCAGCAAAGTCTGAACCAAAAAGTGCCTTAAATTTCAGCCCCATCGGTCTGTTCGATGATGTTCCACCGCCGGACGATGGCGACGAGACGGATGATGTGACGCACCCGAAACAATCCGCATCCGTGGAGTCAACGTTGCCACCGATCCTGGATGAAGCATCTTCCTATTCGCAAGAATCGCAGTCACTGGACTTCATACCGATCGGATCGGCTGGCGGCAGTCGATCGCGATATCTGTTTGACGATGAACCTCCGCCGGA]

[+] EMBL BM619743             [CCGCCCACGCGTCCGAAATATTAGTTTTGTACCAACTTTAGAACCATCGGGCAACGACAATGTTCTCCAGGAGGATAATGCTGCTAAGGCCGAGGAAACATCGGATACATCAGAAACTCCTCACACAAAACTACCCGAGCCAGATGAAGGAACTTTCGCAGATGAAACGCCCAATGGCATGATGATAGCGAACGACATTGATTACTATTTGCATACGAACGAACCTTCGAAAGAGGGTAGCGAGAAGCTTTCTTCAATAGCAACACCAGCAATGGACCGACCGCCAGCACCTGTTACACCTCCTGCAGCAAAGTCTGAACCAAAAAGTGCCTTAAATTTCAGCCCCATCGGTCTGTTCGATGATGTTCCACCGCCGGACGATGGCGACGAGACGGATGATGTGACGCACCCGAAACAATCCGCATCCGTGGAGTCAACGTTGCCACCGATCCTGGATGAAGCATCTTCCTATTCGCAAGAATCGCAGTCACTGGACTTCATACCGATCGGATCGGCTGGCGGCAGTCGATCGCGATATCTGTTTGACGATGAACCTCCGCCGGA]




>consensus_2983#0
CCGCCCACGCGTCCGAAATATTAGTTTTGTACCAACTTTAGAACCATCGGGCAACGACAA
TGTTCTCCAGGAGGATAATGCTGCTAAGGCCGAGGAAACATCGGATACATCAGAAACTCC
TCACACAAAACTACCCGAGCCAGATGAAGGAACTTTCGCAGATGAAACGCCCAATGGCAT
GATGATAGCGAACGACATTGATTACTATTTGCATACGAACGAACCTTCGAAAGAGGGTAG
CGAGAAGCTTTCTTCAATAGCAACACCAGCAATGGACCGACCGCCAGCACCTGTTACACC
TCCTGCAGCAAAGTCTGAACCAAAAAGTGCCTTAAATTTCAGCCCCATCGGTCTGTTCGA
TGATGTTCCACCGCCGGACGATGGCGACGAGACGGATGATGTGACGCACCCGAAACAATC
CGCATCCGTGGAGTCAACGTTGCCACCGATCCTGGATGAAGCATCTTCCTATTCGCAAGA
ATCGCAGTCACTGGACTTCATACCGATCGGATCGGCTGGCGGCAGTCGATCGCGATATCT
GTTTGACGATGAACCTCCGCCGGA

consensusID : consensus_2983#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 510
fasta sequence

                              [CCGCCCTGTCCAAAATCCTGTTGATCCCAAAACATCCATTTTTGATAATTCAACGTCTGAGAATGAAACGAACCACGGTAATGGAGATAGCATAACTCACCAGAAAAGTGAACTGACTCCGCAACCCAAAGCAAGTGAAGAAAATATTAGTTTTGTACCAACTTTAGAACCATCGGGCAACGACAATGTTCTCCAGGAGGATAATGCTGCTAAGGCCGAGGAAACATCGGATACATCAGAAACTCCTCACACAAAACTACCCGAGCCAGATGAAGGAACTTTCGCAGATGAAACGCCCAATGGCATGATGATAGCGAACGACATTGATTACTATTTGCATACGAACGAACCTTCGAAAGAGGGTAGCGAGAAGCTTTCTTCAATAGCAACACCAGCAATGGACCGACCGCCAGCACCTGTTACACCTCCTGCAGCAAAGTCTGAACCAAAAAAGTGCCTTAAATTTCAGCCCCATCGGTCTGTTCGATGATGTTCCACCGCCGGACGATG]

[+] EMBL BM587571             [CCGCCCTGTCCAAAATCCTGTTGATCCCAAAACATCCATTTTTGATAATTCAACGTCTGAGAATGAAACGAACCACGGTAATGGAGATAGCATAACTCACCAGAAAAGTGAACTGACTCCGCAACCCAAAGCAAGTGAAGAAAATATTAGTTTTGTACCAACTTTAGAACCATCGGGCAACGACAATGTTCTCCAGGAGGATAATGCTGCTAAGGCCGAGGAAACATCGGATACATCAGAAACTCCTCACACAAAACTACCCGAGCCAGATGAAGGAACTTTCGCAGATGAAACGCCCAATGGCATGATGATAGCGAACGACATTGATTACTATTTGCATACGAACGAACCTTCGAAAGAGGGTAGCGAGAAGCTTTCTTCAATAGCAACACCAGCAATGGACCGACCGCCAGCACCTGTTACACCTCCTGCAGCAAAGTCTGAACCAAAAAAGTGCCTTAAATTTCAGCCCCATCGGTCTGTTCGATGATGTTCCACCGCCGGACGATG]




>consensus_2983#1
CCGCCCTGTCCAAAATCCTGTTGATCCCAAAACATCCATTTTTGATAATTCAACGTCTGA
GAATGAAACGAACCACGGTAATGGAGATAGCATAACTCACCAGAAAAGTGAACTGACTCC
GCAACCCAAAGCAAGTGAAGAAAATATTAGTTTTGTACCAACTTTAGAACCATCGGGCAA
CGACAATGTTCTCCAGGAGGATAATGCTGCTAAGGCCGAGGAAACATCGGATACATCAGA
AACTCCTCACACAAAACTACCCGAGCCAGATGAAGGAACTTTCGCAGATGAAACGCCCAA
TGGCATGATGATAGCGAACGACATTGATTACTATTTGCATACGAACGAACCTTCGAAAGA
GGGTAGCGAGAAGCTTTCTTCAATAGCAACACCAGCAATGGACCGACCGCCAGCACCTGT
TACACCTCCTGCAGCAAAGTCTGAACCAAAAAAGTGCCTTAAATTTCAGCCCCATCGGTC
TGTTCGATGATGTTCCACCGCCGGACGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2983#0      ------------------------------------------------------------
consensus_2983#1      CCGCCCTGTCCAAAATCCTGTTGATCCCAAAACATCCATTTTTGATAATTCAACGTCTGA 60
                                                                                  

consensus_2983#0      ------------------------------------------------------------
consensus_2983#1      GAATGAAACGAACCACGGTAATGGAGATAGCATAACTCACCAGAAAAGTGAACTGACTCC 120
                                                                                  

consensus_2983#0      ------CCGCCCACGCGTCCGAAATATTAGTTTTGTACCAACTTTAGAACCATCGGGCAA 54
consensus_2983#1      GCAACCCAAAGCAAGTGAAGAAAATATTAGTTTTGTACCAACTTTAGAACCATCGGGCAA 180
                            *    ** * *    ***************************************

consensus_2983#0      CGACAATGTTCTCCAGGAGGATAATGCTGCTAAGGCCGAGGAAACATCGGATACATCAGA 114
consensus_2983#1      CGACAATGTTCTCCAGGAGGATAATGCTGCTAAGGCCGAGGAAACATCGGATACATCAGA 240
                      ************************************************************

consensus_2983#0      AACTCCTCACACAAAACTACCCGAGCCAGATGAAGGAACTTTCGCAGATGAAACGCCCAA 174
consensus_2983#1      AACTCCTCACACAAAACTACCCGAGCCAGATGAAGGAACTTTCGCAGATGAAACGCCCAA 300
                      ************************************************************

consensus_2983#0      TGGCATGATGATAGCGAACGACATTGATTACTATTTGCATACGAACGAACCTTCGAAAGA 234
consensus_2983#1      TGGCATGATGATAGCGAACGACATTGATTACTATTTGCATACGAACGAACCTTCGAAAGA 360
                      ************************************************************

consensus_2983#0      GGGTAGCGAGAAGCTTTCTTCAATAGCAACACCAGCAATGGACCGACCGCCAGCACCTGT 294
consensus_2983#1      GGGTAGCGAGAAGCTTTCTTCAATAGCAACACCAGCAATGGACCGACCGCCAGCACCTGT 420
                      ************************************************************

consensus_2983#0      TACACCTCCTGCAGCAAAGTCTGAACCAAAAA-GTGCCTTAAATTTCAGCCCCATCGGTC 353
consensus_2983#1      TACACCTCCTGCAGCAAAGTCTGAACCAAAAAAGTGCCTTAAATTTCAGCCCCATCGGTC 480
                      ******************************** ***************************

consensus_2983#0      TGTTCGATGATGTTCCACCGCCGGACGATGGCGACGAGACGGATGATGTGACGCACCCGA 413
consensus_2983#1      TGTTCGATGATGTTCCACCGCCGGACGATG------------------------------ 510
                      ******************************                              

consensus_2983#0      AACAATCCGCATCCGTGGAGTCAACGTTGCCACCGATCCTGGATGAAGCATCTTCCTATT 473
consensus_2983#1      ------------------------------------------------------------
                                                                                  

consensus_2983#0      CGCAAGAATCGCAGTCACTGGACTTCATACCGATCGGATCGGCTGGCGGCAGTCGATCGC 533
consensus_2983#1      ------------------------------------------------------------
                                                                                  

consensus_2983#0      GATATCTGTTTGACGATGAACCTCCGCCGGA 564
consensus_2983#1      -------------------------------