cluster # 300

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 300 cluster # 300 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_300#0 length = 1033 sequences # 1

consensus_300#1 length = 494 sequences # 1

consensusID : consensus_300#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1033
fasta sequence

                              [CATGCAGAATCGCCCGAGGTTAATTCACAACGCGAAAAAATGGCCGCATCGAAGCTACAATTAAAAGCCAGTGCGCTACCGATGCGGTCACACAAGAGTGTCACGGGCAGCAATATAGAGTGAGCTGATTTCAAGCATACAAAGTGGTAAAAGATTACCTTGAACGATCTGCTACACCGCGATTTGTGTGTACGTGGACTGCTGAGTTCTGTGTGTAGTGCACGAAATGTGAACTGTGCAATAATCCCCCCCTCTCCCCCCCGCGCCCAAACGCAACTGTAAACTGTGCGAGGAATATCAAGCTGTGGNGCGTGAGAGCGATGCCGGCAGAAGCAGTGAGCAGCAGAACGAGCNAGAGTGCTGAGCACTAAACACACGCAGAGTGTNTGTAGATTTTTGGCTTGCGATCCATACAACCGAGGAGCTAGATAATTCACNGTTANGGTCCACATTCTTTGNTGTAACATGCCNCNAGCAAACCCCAGCGCTTGCACACACACANAACGCCCGAGCGCAGGTAAGCANACAGGGTAGGGACANCCAGGNGTGTTCGGTTGTAGGTTGNACAGTTGGAACAGTCGACCGGTGTCATANCGCGTAGAGGAAATNNNCGCGCAGTCACACTNAAACAANGGGTGAGGATACCCCTNTTNATACGCGGTTACGCCTAAANTAAACGAGACAGAATAAAAAAGGAATCNGANGTGCAACGTTGCTCGNGAACTATAATAANGCCAACAGGGGCAGGAACTAAAGGCTTAGCTTCACCNNGGTGCANACGCCATNATGGGTTGAAGCANTCCCCNCTNGGTACCCAAACNGTGGTGCAGCNAAGCGANCACGGGGACTTACACAAANTNNCTGTGGCCTCGTGNCNAAACANANAACANACGGAGACGCCNNACNACCCCGCCCTAAAAACACGNGTGGATATTGTNNCNGNNACGNAACATATTCCCGATTNCGTGANTGGGTCTAGCATTNAGTCCTTNGGAGACGGNAGNNCGGCAGACAACGCTNTNACATCGTGCAC]

[+] EMBL AL933591             [CATGCAGAATCGCCCGAGGTTAATTCACAACGCGAAAAAATGGCCGCATCGAAGCTACAATTAAAAGCCAGTGCGCTACCGATGCGGTCACACAAGAGTGTCACGGGCAGCAATATAGAGTGAGCTGATTTCAAGCATACAAAGTGGTAAAAGATTACCTTGAACGATCTGCTACACCGCGATTTGTGTGTACGTGGACTGCTGAGTTCTGTGTGTAGTGCACGAAATGTGAACTGTGCAATAATCCCCCCCTCTCCCCCCCGCGCCCAAACGCAACTGTAAACTGTGCGAGGAATATCAAGCTGTGGNGCGTGAGAGCGATGCCGGCAGAAGCAGTGAGCAGCAGAACGAGCNAGAGTGCTGAGCACTAAACACACGCAGAGTGTNTGTAGATTTTTGGCTTGCGATCCATACAACCGAGGAGCTAGATAATTCACNGTTANGGTCCACATTCTTTGNTGTAACATGCCNCNAGCAAACCCCAGCGCTTGCACACACACANAACGCCCGAGCGCAGGTAAGCANACAGGGTAGGGACANCCAGGNGTGTTCGGTTGTAGGTTGNACAGTTGGAACAGTCGACCGGTGTCATANCGCGTAGAGGAAATNNNCGCGCAGTCACACTNAAACAANGGGTGAGGATACCCCTNTTNATACGCGGTTACGCCTAAANTAAACGAGACAGAATAAAAAAGGAATCNGANGTGCAACGTTGCTCGNGAACTATAATAANGCCAACAGGGGCAGGAACTAAAGGCTTAGCTTCACCNNGGTGCANACGCCATNATGGGTTGAAGCANTCCCCNCTNGGTACCCAAACNGTGGTGCAGCNAAGCGANCACGGGGACTTACACAAANTNNCTGTGGCCTCGTGNCNAAACANANAACANACGGAGACGCCNNACNACCCCGCCCTAAAAACACGNGTGGATATTGTNNCNGNNACGNAACATATTCCCGATTNCGTGANTGGGTCTAGCATTNAGTCCTTNGGAGACGGNAGNNCGGCAGACAACGCTNTNACATCGTGCAC]




>consensus_300#0
CATGCAGAATCGCCCGAGGTTAATTCACAACGCGAAAAAATGGCCGCATCGAAGCTACAA
TTAAAAGCCAGTGCGCTACCGATGCGGTCACACAAGAGTGTCACGGGCAGCAATATAGAG
TGAGCTGATTTCAAGCATACAAAGTGGTAAAAGATTACCTTGAACGATCTGCTACACCGC
GATTTGTGTGTACGTGGACTGCTGAGTTCTGTGTGTAGTGCACGAAATGTGAACTGTGCA
ATAATCCCCCCCTCTCCCCCCCGCGCCCAAACGCAACTGTAAACTGTGCGAGGAATATCA
AGCTGTGGNGCGTGAGAGCGATGCCGGCAGAAGCAGTGAGCAGCAGAACGAGCNAGAGTG
CTGAGCACTAAACACACGCAGAGTGTNTGTAGATTTTTGGCTTGCGATCCATACAACCGA
GGAGCTAGATAATTCACNGTTANGGTCCACATTCTTTGNTGTAACATGCCNCNAGCAAAC
CCCAGCGCTTGCACACACACANAACGCCCGAGCGCAGGTAAGCANACAGGGTAGGGACAN
CCAGGNGTGTTCGGTTGTAGGTTGNACAGTTGGAACAGTCGACCGGTGTCATANCGCGTA
GAGGAAATNNNCGCGCAGTCACACTNAAACAANGGGTGAGGATACCCCTNTTNATACGCG
GTTACGCCTAAANTAAACGAGACAGAATAAAAAAGGAATCNGANGTGCAACGTTGCTCGN
GAACTATAATAANGCCAACAGGGGCAGGAACTAAAGGCTTAGCTTCACCNNGGTGCANAC
GCCATNATGGGTTGAAGCANTCCCCNCTNGGTACCCAAACNGTGGTGCAGCNAAGCGANC
ACGGGGACTTACACAAANTNNCTGTGGCCTCGTGNCNAAACANANAACANACGGAGACGC
CNNACNACCCCGCCCTAAAAACACGNGTGGATATTGTNNCNGNNACGNAACATATTCCCG
ATTNCGTGANTGGGTCTAGCATTNAGTCCTTNGGAGACGGNAGNNCGGCAGACAACGCTN
TNACATCGTGCAC

consensusID : consensus_300#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [ATCGCCCGAGGTTTTTCACAACGCGAAAAAAATGCCCGCAATCGAAGCTACAATTAAAAGCCAGGGCGCTACCGAGGCGGTCACACAAGAGGTCACGGGCAGCAATATGAGTGAGCTGATTTCAAGCATCAAAGTGGTAAAGGATTCGTTGAACGATCTGCTCACCGCGATTGTGGTACGGGACGCCGAGTTCCGGGTAGTGCACGGAAGGAACGCACGGAAGAAGCTACAGAAGAAGGGAGCAGCTGATGGTGAAAGTAGTGATGAACCGGAGGAGGGCGACAAAGAATCCAACAAGCGGCAGAAGGTGTAGGCCGTAGAACAGCTTTCAAAGTGCAGTATAAAGCGATAGCGAATGCATTTTTGAATTTTACCGGTTTCAGTTGTATGTAAGTGTGCCTTTTCGAATTGACCATGTTTTGAAGTAAAAGCAGGCAGCATGCGACCGGTGCGCGCATGTCGCCACCAACCTGCCGTTGCTAGGACGCAATGTT]

[+] EMBL AL933695             [ATCGCCCGAGGTTTTTCACAACGCGAAAAAAATGCCCGCAATCGAAGCTACAATTAAAAGCCAGGGCGCTACCGAGGCGGTCACACAAGAGGTCACGGGCAGCAATATGAGTGAGCTGATTTCAAGCATCAAAGTGGTAAAGGATTCGTTGAACGATCTGCTCACCGCGATTGTGGTACGGGACGCCGAGTTCCGGGTAGTGCACGGAAGGAACGCACGGAAGAAGCTACAGAAGAAGGGAGCAGCTGATGGTGAAAGTAGTGATGAACCGGAGGAGGGCGACAAAGAATCCAACAAGCGGCAGAAGGTGTAGGCCGTAGAACAGCTTTCAAAGTGCAGTATAAAGCGATAGCGAATGCATTTTTGAATTTTACCGGTTTCAGTTGTATGTAAGTGTGCCTTTTCGAATTGACCATGTTTTGAAGTAAAAGCAGGCAGCATGCGACCGGTGCGCGCATGTCGCCACCAACCTGCCGTTGCTAGGACGCAATGTT]




>consensus_300#1
ATCGCCCGAGGTTTTTCACAACGCGAAAAAAATGCCCGCAATCGAAGCTACAATTAAAAG
CCAGGGCGCTACCGAGGCGGTCACACAAGAGGTCACGGGCAGCAATATGAGTGAGCTGAT
TTCAAGCATCAAAGTGGTAAAGGATTCGTTGAACGATCTGCTCACCGCGATTGTGGTACG
GGACGCCGAGTTCCGGGTAGTGCACGGAAGGAACGCACGGAAGAAGCTACAGAAGAAGGG
AGCAGCTGATGGTGAAAGTAGTGATGAACCGGAGGAGGGCGACAAAGAATCCAACAAGCG
GCAGAAGGTGTAGGCCGTAGAACAGCTTTCAAAGTGCAGTATAAAGCGATAGCGAATGCA
TTTTTGAATTTTACCGGTTTCAGTTGTATGTAAGTGTGCCTTTTCGAATTGACCATGTTT
TGAAGTAAAAGCAGGCAGCATGCGACCGGTGCGCGCATGTCGCCACCAACCTGCCGTTGC
TAGGACGCAATGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_300#0      CATGCAGAATCGCCCGAGGTTAATTCACAACGCGAAAAAA-TGGCCGCA-TCGAAGCTAC 58
consensus_300#1      --------ATCGCCCGAGGTTT-TTCACAACGCGAAAAAAATGCCCGCAATCGAAGCTAC 51
                             *************  ***************** ** ***** **********

consensus_300#0      AATTAAAAGCCAGTGCGCTACCGATGCGGTCACACAAGAGTGTCACGGGCAGCAATATAG 118
consensus_300#1      AATTAAAAGCCAGGGCGCTACCGAGGCGGTCACACAAGAG-GTCACGGGCAGCAATAT-G 109
                     ************* ********** *************** ***************** *

consensus_300#0      AGTGAGCTGATTTCAAGCATACAAAGTGGTAAAAGATTACCTTGAACGATCTGCTACACC 178
consensus_300#1      AGTGAGCTGATTTCAAGCAT-CAAAGTGGTAAAGGATT-CGTTGAACGATCTGCT-CACC 166
                     ******************** ************ **** * ************** ****

consensus_300#0      GCGATTTGTGTGTACGTGGACTGCTGAGTTCTGTGTGTAGTGCACGAAATGTGAACTGTG 238
consensus_300#1      GCGATT-GTG-GTACG-GGAC-GCCGAGTTCCGGGT--AGTGCACGGAA-GGAACGCACG 219
                     ****** *** ***** **** ** ****** * **  ******** ** *  *     *

consensus_300#0      CAATAATCCCCCCCTCTCCCCCCCGCGCCCAAACGCAACTGTAAACTGTGCGAGGAAT-A 297
consensus_300#1      GAAGAAGCT---------------ACAGAAGAAGGGAGCAGCTGATGGTGAAAGTAGTGA 264
                      ** ** *                 *     ** * * * *   *  ***  ** * * *

consensus_300#0      TCAAGCTGTGGNGCGTGAGAGCGATGCCGGCAGAAGCAGTGAGCAGCAGAACGAGCNAGA 357
consensus_300#1      TGAACCGGAGGAGGGCGACAAAGAATCCAACAAGCGGCAGAAGGTGTAGGCCGTAGAACA 324
                     * ** * * ** * * ** *  **  **  **   *     **  * **  **    * *

consensus_300#0      GTGCTGAGCACTAAACACACGCAGAGTGTNTGTAGATTTTTGGCTTGCGATCCATACAAC 417
consensus_300#1      GCTTTCAAAGTGCAGTATAAAGCGATAGCGAATGCATTTTTGAATTTTACCGGTTTCAGT 384
                     *   * *      *  * *    **  *    *  *******  **        * **  

consensus_300#0      CGAGGAGCTAGATAATTCACNGTTANGGTCCACATTCTTTGNTGTAACATGCCNCNAGCA 477
consensus_300#1      TGTATG--TAAGTG-TGCCTTTTCGAATTGACCATGTTTTGAAGTAA-AAGCAGGCAGCA 440
                      *      **  *  * *    *     *   ***  ****  **** * **    ****

consensus_300#0      AACCCCAGCGCTTGCACACACACANAACGCCCGAGCGCAGGTAAGCANACAGGGTAGGGA 537
consensus_300#1      TGCGACCG-GTGCGCGCATGTCGCCACCAACCTGCCGTTGCTAGG-ACGCAATGTT---- 494
                       *  * * *   ** **       * *  **   **  * ** * *  **  **     

consensus_300#0      CANCCAGGNGTGTTCGGTTGTAGGTTGNACAGTTGGAACAGTCGACCGGTGTCATANCGC 597
consensus_300#1      ------------------------------------------------------------
                                                                                 

consensus_300#0      GTAGAGGAAATNNNCGCGCAGTCACACTNAAACAANGGGTGAGGATACCCCTNTTNATAC 657
consensus_300#1      ------------------------------------------------------------
                                                                                 

consensus_300#0      GCGGTTACGCCTAAANTAAACGAGACAGAATAAAAAAGGAATCNGANGTGCAACGTTGCT 717
consensus_300#1      ------------------------------------------------------------
                                                                                 

consensus_300#0      CGNGAACTATAATAANGCCAACAGGGGCAGGAACTAAAGGCTTAGCTTCACCNNGGTGCA 777
consensus_300#1      ------------------------------------------------------------
                                                                                 

consensus_300#0      NACGCCATNATGGGTTGAAGCANTCCCCNCTNGGTACCCAAACNGTGGTGCAGCNAAGCG 837
consensus_300#1      ------------------------------------------------------------
                                                                                 

consensus_300#0      ANCACGGGGACTTACACAAANTNNCTGTGGCCTCGTGNCNAAACANANAACANACGGAGA 897
consensus_300#1      ------------------------------------------------------------
                                                                                 

consensus_300#0      CGCCNNACNACCCCGCCCTAAAAACACGNGTGGATATTGTNNCNGNNACGNAACATATTC 957
consensus_300#1      ------------------------------------------------------------
                                                                                 

consensus_300#0      CCGATTNCGTGANTGGGTCTAGCATTNAGTCCTTNGGAGACGGNAGNNCGGCAGACAACG 1017
consensus_300#1      ------------------------------------------------------------
                                                                                 

consensus_300#0      CTNTNACATCGTGCAC 1033
consensus_300#1      ----------------