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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_302#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 746 fasta sequence
[GCAGATCGGCACGNAGGGATAAGCAGTCAAACAGACAAAACAACCAATAAGATGGAACTAACAAACAAACCAACCAACCAACCAACAAAACAAACCAAGCAACAACACACACAAATATAGGTTGTTTTAAGAGTCTCACCCCTCTCTGCTCGTTTTTGTGAGGACAGTTAAGTCGTGTATGAAGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGAGTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAAAGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTAGAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTGTAAGAAACAAAGCAAGAAAACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAAGCAAACCGAAATGCATCTACAGTGTGCAAATACGGAATGGAGCGTGAGTGGTGGGTTTAGTATAAAGCAAGCAACAACGAAAACGAAGAAGGAAAGTAAAGCAAAANACCAGGACAAATGGGTAGGCAACGACAGCACNTTGACGATGACATAAGTGCACAACTTGCATGGATTGANTCTTATCATTGGGNCAGCAGGCAAGCTTAAGGAACTACNAAACCAATTATAGCCAGNGGTCNTTGNTGGTCGTGTGTGTTNATGTGCAAGNCAACTAAGCTCTTAAN]
[+] EMBL BX467941 [GCAGATCGGCACGNAGGGATAAGCAGTCAAACAGACAAAACAACCAATAAGATGGAACTAACAAACAAACCAACCAACCAACCAACAAAACAAACCAAGCAACAACACACACAAATATAGGTTGTTTTAAGAGTCTCACCCCTCTCTGCTCGTTTTTGTGAGGACAGTTAAGTCGTGTATGAAGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGAGTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAAAGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTAGAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTGTAAGAAACAAAGCAAGAAAACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAAGCAAACCGAAATGCATCTACAGTGTGCAAATACGGAATGGAGCGTGAGTGGTGGGTTTAGTATAAAGCAAGCAACAACGAAAACGAAGAAGGAAAGTAAAGCAAAANACCAGGACAAATGGGTAGGCAACGACAGCACNTTGACGATGACATAAGTGCACAACTTGCATGGATTGANTCTTATCATTGGGNCAGCAGGCAAGCTTAAGGAACTACNAAACCAATTATAGCCAGNGGTCNTTGNTGGTCGTGTGTGTTNATGTGCAAGNCAACTAAGCTCTTAAN]
consensusID : consensus_302#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[CCGGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGAGTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAAAGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTAGAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTTAAAAACAAAGCAAGAAAACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAACAAACCGAAATGCATCTACAGTGTGCAAATACGAATGGAGCGTGAGTGGTGGGTTTAGTATAAACAACAACAACAAAACGAAGAAGGAAAGTAAACAAAACCAGACAATGGTAGGCAACACACACATTAAGATAATAAGTGCACACTTGATGGATTAATCTTATCATGGCAGCAGCAGCTAGAACTACAAACAATATAGCAGTGTGTGTGTGTGTGTGTATGTGCAGCACTAGCTCTTAATACACTGCAATGAGGCAAAGCAAAAAAAAGCAACAACAAACAAACAGCAAACGTAGTGATAAGCGA]
[+] EMBL BM644184 [CCGGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGAGTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAAAGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTAGAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTTAAAAACAAAGCAAGAAAACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAACAAACCGAAATGCATCTACAGTGTGCAAATACGAATGGAGCGTGAGTGGTGGGTTTAGTATAAACAACAACAACAAAACGAAGAAGGAAAGTAAACAAAACCAGACAATGGTAGGCAACACACACATTAAGATAATAAGTGCACACTTGATGGATTAATCTTATCATGGCAGCAGCAGCTAGAACTACAAACAATATAGCAGTGTGTGTGTGTGTGTGTATGTGCAGCACTAGCTCTTAATACACTGCAATGAGGCAAAGCAAAAAAAAGCAACAACAAACAAACAGCAAACGTAGTGATAAGCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_302#0 GCAGATCGGCACGNAGGGATAAGCAGTCAAACAGACAAAACAACCAATAAGATGGAACTA 60
consensus_302#1 ------------------------------------------------------------
consensus_302#0 ACAAACAAACCAACCAACCAACCAACAAAACAAACCAAGCAACAACACACACAAATATAG 120
consensus_302#1 ------------------------------------------------------------
consensus_302#0 GTTGTTTTAAGAGTCTCACCCCTCTCTGCTCGTTTTTGTGAGGACAGTTAAGTCGTGTAT 180
consensus_302#1 ------------------------------------------------------------
consensus_302#0 GAAGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGA 240
consensus_302#1 CCGGCTGTACAAAAGCCCCAAGACACGTATATATCTAGCATCGCGCAAGCAGGAGTGAGA 60
*********************************************************
consensus_302#0 GTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAA 300
consensus_302#1 GTGTGGGTGGAACTGGAAATGGAAAGTGAGAAAACATTATATCAACCAACCGAGAAGGAA 120
************************************************************
consensus_302#0 AGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTA 360
consensus_302#1 AGTGACAACAAAAACAGAAGCTACACAAGGTGAAAAGCGAAACAAGTGCACACGGCGTTA 180
************************************************************
consensus_302#0 GAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTGTAAGAAACAAAGCAAGAA 420
consensus_302#1 GAGATTAACTTATAGTGAAACTGTTACTGAGAAGCAATTTTT--AAAAACAAAGCAAGAA 238
***************************************** * **************
consensus_302#0 AACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAAGCAAACCGAAATGCATCT 480
consensus_302#1 AACAAGTAGAGAATTCAACAAGAGTGGGGTAACGCGAACAAA-CAAACCGAAATGCATCT 297
****************************************** *****************
consensus_302#0 ACAGTGTGCAAATACGGAATGGAGCGTGAGTGGTGGGTTTAGTATAAAGCAAGCAACAAC 540
consensus_302#1 ACAGTGTGCAAATACG-AATGGAGCGTGAGTGGTGGGTTTAGTATAAAC--AACAACAAC 354
**************** ******************************* * *******
consensus_302#0 GAAAACGAAGAAGGAAAGTAAAGCAAAANACCAGGACAAATGGGTAGGCAACGACAGCAC 600
consensus_302#1 -AAAACGAAGAAGGAAAGTAA---ACAAAACCAG-ACAAT--GGTAGGCAAC-ACA-CAC 405
******************** * ** ***** **** ********** *** ***
consensus_302#0 NTTGACGATGACATAAGTGCACAACTTGCATGGATTGANTCTTATCATTGGGNCAGCAGG 660
consensus_302#1 ATTAA-GATAA--TAAGTGCACA-CTTG-ATGGATT-AATCTTATCATGGCAGCAGCAGC 459
** * *** * ********** **** ******* * ********* * ******
consensus_302#0 CAAGCTTAAGGAACTACNAAACCAATTATAGCCAGNGGTCNTTGN-TGGTCGTGTGTGTT 719
consensus_302#1 TAGAACTACA-AACAATATAGCAGTGTGTGTGTGTGTGTGTATGTGCAGCACTAGCTCTT 518
* ** *** * * * * * ** ** * * * **
consensus_302#0 NATG---TGCAAGNCAACTAAGCTCTTAAN------------------------------ 746
consensus_302#1 AATACACTGCAATGAGGCAAAGCAAAAAAAAGCAACAACAAACAAACAGCAAACGTAGTG 578
** ***** * **** **
consensus_302#0 --------
consensus_302#1 ATAAGCGA 586
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||