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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 724 fasta sequence
[CCGGAAGTTTCGCTAGCCTACCTGTACAACGACAACCTGGAGGAGGATCAGGAGGATTGGAAGAGCGTCGAGAGTGACTACAACAACGCCGACGAAGAGTTTGACAGCGATGGCAAGGGGGAGGATGAAGAAGGCGAAGAAGAGGAAGATGGTGAGGATGATGCCGATGGGTCGGAGGCTGCAGCATCGTCGACCGCTGCAGTAGCGGCGGAAGCAGACGAATCAAAGTCCACAGCAACAGAAGCGGCAGCCGCCACATCGTCAACCACAGAAGATGTTGCGAAAGAAGGTGAACCGGAAGCAAGGGGCAAGAAGAGAAAGTTCCAAGGCACGGACAGCGACGGTTAAGCGGCACGCTAAACGCTTCCAAGTCATACACAAAACCTAATACAAATGTGTGGAGGTATAACGGCAACGCGCTGGAGGCTCTTTCGCTCGACGGCGTGTCATTCGTTGCCCTTCCACTCGCAAAGCAAACGTTTATCCCCCAACCAACAACAATTCATGCAATTCGTCATCACTCCGCTACTGTCGTTCGCGCAGTAGTGTAATGGATATGTAACTACAAAGTTTTATCTTCTTTTTTACCATCAAAAGAAAATGTGTAACAACAGCTAGCTATCATAGTTTGATGAAATCCACAACAATATATACATATAGAAGAAGAGCGAATATTTCCCCACAATAGACGCCAACACACACACACACACCATACACGCTCCGA]
[+] EMBL BM593099 [CCGGAAGTTTCGCTAGCCTACCTGTACAACGACAACCTGGAGGAGGATCAGGAGGATTGGAAGAGCGTCGAGAGTGACTACAACAACGCCGACGAAGAGTTTGACAGCGATGGCAAGGGGGAGGATGAAGAAGGCGAAGAAGAGGAAGATGGTGAGGATGATGCCGATGGGTCGGAGGCTGCAGCATCGTCGACCGCTGCAGTAGCGGCGGAAGCAGACGAATCAAAGTCCACAGCAACAGAAGCGGCAGCCGCCACATCGTCAACCACAGAAGATGTTGCGAAAGAAGGTGAACCGGAAGCAAGGGGCAAGAAGAGAAAGTTCCAAGGCACGGACAGCGACGGTTAAGCGGCACGCTAAACGCTTCCAAGTCATACACAAAACCTAATACAAATGTGTGGAGGTATAACGGCAACGCGCTGGAGGCTCTTTCGCTCGACGGCGTGTCATTCGTTGCCCTTCCACTCGCAAAGCAAACGTTTATCCCCCAACCAACAACAATTCATGCAATTCGTCATCACTCCGCTACTGTCGTTCGCGCAGTAGTGTAATGGATATGTAACTACAAAGTTTTATCTTCTTTTTTACCATCAAAAGAAAATGTGTAACAACAGCTAGCTATCATAGTTTGATGAAATCCACAACAATATATACATATAGAAGAAGAGCGAATATTTCCCCACAATAGACGCCAACACACACACACACACCATACACGCTCCGA]
consensusID : consensus_3038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[CCGGAGGATTGGAAGAGCGTCGAGAGTGACTACAACAACGCTGACGAAGAGTTTGACAGTGAGGAGGAAGAGGATGAAGAAGGTGGCGGCGGCGGTGGTGGTGGTGGCGAGAATGAGGGTGAAGATGGTGGAGACAGCGATGGCAAGGGGGAGGATGAAGAAGGCGAAGAAGAGGAAGATGGTGAGGATGATGCCGATGGGTCGGAGGCTGCAGCATCGTCGACCGCTGCAGTAGCGGCGGAAGCAGACGAATCAAAGTCCACAGCAACAGAAGCGGCAGCCGCCACATCGTCAACCACAGAAGATGTTGCGAAAGAAGGTGAACCGGAAGCAAGGGGCAAGAAGAGAAAGTTCCAAGGCACGGACAGCGACGGTTAAGCGGCACGCTAAACGCTTCCAAGTCATACACAAAACCTAATACAAATTGTGTGGAGGTGTAACGGCAACGCGCTGGAGGCTCTTTCGCTCGACGGCGTGTCATTCGTTGCCCTTCCACACGCAAAGCAAACGTTTATCCCCCAACCAACAACAATTCATGCAATTCGTCATCACTCCGCTACTGTCGTTCGCGCAGTAGTGTAATGGATATGTAACTACAAAGTTTTATC]
[+] EMBL BM620815 [CCGGAGGATTGGAAGAGCGTCGAGAGTGACTACAACAACGCTGACGAAGAGTTTGACAGTGAGGAGGAAGAGGATGAAGAAGGTGGCGGCGGCGGTGGTGGTGGTGGCGAGAATGAGGGTGAAGATGGTGGAGACAGCGATGGCAAGGGGGAGGATGAAGAAGGCGAAGAAGAGGAAGATGGTGAGGATGATGCCGATGGGTCGGAGGCTGCAGCATCGTCGACCGCTGCAGTAGCGGCGGAAGCAGACGAATCAAAGTCCACAGCAACAGAAGCGGCAGCCGCCACATCGTCAACCACAGAAGATGTTGCGAAAGAAGGTGAACCGGAAGCAAGGGGCAAGAAGAGAAAGTTCCAAGGCACGGACAGCGACGGTTAAGCGGCACGCTAAACGCTTCCAAGTCATACACAAAACCTAATACAAATTGTGTGGAGGTGTAACGGCAACGCGCTGGAGGCTCTTTCGCTCGACGGCGTGTCATTCGTTGCCCTTCCACACGCAAAGCAAACGTTTATCCCCCAACCAACAACAATTCATGCAATTCGTCATCACTCCGCTACTGTCGTTCGCGCAGTAGTGTAATGGATATGTAACTACAAAGTTTTATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3038#0 ----------------------------CCGGAAGTTTCGCTAGCCTACCTGTACAACGA 32
consensus_3038#1 CCGGAGGATTGGAAGAGCGTCGAGAGTGACTACAACAACGCTGACGAAGA-GTTTGACAG 59
* * **** * * ** **
consensus_3038#0 CAACCTGGAGGAGGATCAGGAGGATTGGAAGAGCGTCGAGAGTGACTACAACAACGCCGA 92
consensus_3038#1 TGAGGAGGAAGAGGATGAAGAAGGTGGCGGCGGCGGTGGTGGTGGTGGCGAGAATGAGGG 119
* *** ****** * ** * * * *** * *** * * ** * *
consensus_3038#0 CGAAGAGTTTG---ACAGCGATGGCAAGGGGGAGGATGAAGAAGGCGAAGAAGAGGAAGA 149
consensus_3038#1 TGAAGATGGTGGAGACAGCGATGGCAAGGGGGAGGATGAAGAAGGCGAAGAAGAGGAAGA 179
***** ** **********************************************
consensus_3038#0 TGGTGAGGATGATGCCGATGGGTCGGAGGCTGCAGCATCGTCGACCGCTGCAGTAGCGGC 209
consensus_3038#1 TGGTGAGGATGATGCCGATGGGTCGGAGGCTGCAGCATCGTCGACCGCTGCAGTAGCGGC 239
************************************************************
consensus_3038#0 GGAAGCAGACGAATCAAAGTCCACAGCAACAGAAGCGGCAGCCGCCACATCGTCAACCAC 269
consensus_3038#1 GGAAGCAGACGAATCAAAGTCCACAGCAACAGAAGCGGCAGCCGCCACATCGTCAACCAC 299
************************************************************
consensus_3038#0 AGAAGATGTTGCGAAAGAAGGTGAACCGGAAGCAAGGGGCAAGAAGAGAAAGTTCCAAGG 329
consensus_3038#1 AGAAGATGTTGCGAAAGAAGGTGAACCGGAAGCAAGGGGCAAGAAGAGAAAGTTCCAAGG 359
************************************************************
consensus_3038#0 CACGGACAGCGACGGTTAAGCGGCACGCTAAACGCTTCCAAGTCATACACAAAACCTAAT 389
consensus_3038#1 CACGGACAGCGACGGTTAAGCGGCACGCTAAACGCTTCCAAGTCATACACAAAACCTAAT 419
************************************************************
consensus_3038#0 ACAAAT-GTGTGGAGGTATAACGGCAACGCGCTGGAGGCTCTTTCGCTCGACGGCGTGTC 448
consensus_3038#1 ACAAATTGTGTGGAGGTGTAACGGCAACGCGCTGGAGGCTCTTTCGCTCGACGGCGTGTC 479
****** ********** ******************************************
consensus_3038#0 ATTCGTTGCCCTTCCACTCGCAAAGCAAACGTTTATCCCCCAACCAACAACAATTCATGC 508
consensus_3038#1 ATTCGTTGCCCTTCCACACGCAAAGCAAACGTTTATCCCCCAACCAACAACAATTCATGC 539
***************** ******************************************
consensus_3038#0 AATTCGTCATCACTCCGCTACTGTCGTTCGCGCAGTAGTGTAATGGATATGTAACTACAA 568
consensus_3038#1 AATTCGTCATCACTCCGCTACTGTCGTTCGCGCAGTAGTGTAATGGATATGTAACTACAA 599
************************************************************
consensus_3038#0 AGTTTTATCTTCTTTTTTACCATCAAAAGAAAATGTGTAACAACAGCTAGCTATCATAGT 628
consensus_3038#1 AGTTTTATC--------------------------------------------------- 608
*********
consensus_3038#0 TTGATGAAATCCACAACAATATATACATATAGAAGAAGAGCGAATATTTCCCCACAATAG 688
consensus_3038#1 ------------------------------------------------------------
consensus_3038#0 ACGCCAACACACACACACACACCATACACGCTCCGA 724
consensus_3038#1 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||