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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence
[AGGTTATCCGTGGAATTTGTTTTCCACCAGTACGAGGGCACCCTGTTACCGCGAACGGTTAGCAGTTTGTCAGCTACTTCAGGCAGCAAACCAACGCGCGATCCTGCAATCCACCTAGGCGGCAAACGCGTGTAGCCAAAGTAACGCCGACCGGGCGGCAAAATTGCATTATCATAAAGCCAATCTCAAAATTTGCCATTTTCAACCTTTCACCAAGATTGCACGGATTTGGTCATCTTTCGCGAAGCACACTTCCCTCATAAGCATGGGGTATCCGTTTCGCAACCCAACCGTACTCTTCGAGGTTCTTTNTTTCCTTCATTTTACCGTCATCGACGTTGTCGGTGGGGCCATACATTGTCTGCTCATGCATTTCAAATTCTAGCGATTACTGTAGAAGGGACCCTTTNNNGTGCAATAATGAAAGTGGTCGCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAATGGAGATATTATGTCTTACCCGTCTTTCCTGCCTATGTGTCAGGGTATTAAACTTCGTGCTTTACTAAAGGCACTAGGAACAAACACAGTCCAGAAGCATTTCAGTTTGAAATCTAAAACTGCATAATAAAATCTNTACCAATACTACAAAAATAACATAAACACGCATGATTCGGTTCATCAATTACTGGAATCAATANTGAACTTATGTACNGCGTCCTNTACTAGTCTAACAAATCCTCTAAATCTTTATTCCTT]
[+] EMBL AL934864 [AGGTTATCCGTGGAATTTGTTTTCCACCAGTACGAGGGCACCCTGTTACCGCGAACGGTTAGCAGTTTGTCAGCTACTTCAGGCAGCAAACCAACGCGCGATCCTGCAATCCACCTAGGCGGCAAACGCGTGTAGCCAAAGTAACGCCGACCGGGCGGCAAAATTGCATTATCATAAAGCCAATCTCAAAATTTGCCATTTTCAACCTTTCACCAAGATTGCACGGATTTGGTCATCTTTCGCGAAGCACACTTCCCTCATAAGCATGGGGTATCCGTTTCGCAACCCAACCGTACTCTTCGAGGTTCTTTNTTTCCTTCATTTTACCGTCATCGACGTTGTCGGTGGGGCCATACATTGTCTGCTCATGCATTTCAAATTCTAGCGATTACTGTAGAAGGGACCCTTTNNNGTGCAATAATGAAAGTGGTCGCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAATGGAGATATTATGTCTTACCCGTCTTTCCTGCCTATGTGTCAGGGTATTAAACTTCGTGCTTTACTAAAGGCACTAGGAACAAACACAGTCCAGAAGCATTTCAGTTTGAAATCTAAAACTGCATAATAAAATCTNTACCAATACTACAAAAATAACATAAACACGCATGATTCGGTTCATCAATTACTGGAATCAATANTGAACTTATGTACNGCGTCCTNTACTAGTCTAACAAATCCTCTAAATCTTTATTCCTT]
consensusID : consensus_3053#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[CCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAAATGGAGATATTATGTCTTCCCGTCTTTCCTGCCTATGTGTCGGGGTATTAAACTTCGTGCTTTACTAAAGGCACTAGGAACAAACACAGTCCAGAAGCATTCAGTTTGAAAAATAAAATGATAATAAAATCTTCCAATACTACAAAAATAAATAAACACTCATGATTCGGTTCATCAATTACTGGAATCAATTTTGAATTATGTTTGCGTCCTTTCTTGTTTAAAAATCCTCTAAATCTTTATTCCTTATTGGAAATACTATTGTAATGTTAAACAGTAAGTAGCAAATATAAGCGCCACTGTTTGTAATCTAACAGATTTCCGTACAGACACATTCCACAAAGGGCAAAAATATAACACAAAAATTGTAAAAATATTATAATATGTAAGCTAGTGCTTAAAAATATGTATGATTCATTCTTCTGTAGGTTAAATAATAGCCTCTCTATTTTCTCGCTTACCTTCGCTCACTTTTGTATCTGTTTCGGTGAGATGATATGTATTTATAATAACAATGAGCGTGTAAAGGTCTAGTTTTACTAGCTTGTAAGTACAATACAGGAAGGCCAGCATACATCCTTATTGTAGCGGCTTTGGCCTCTAAGCCGAGAAAGCAGTTTCATACAG]
[+] EMBL BM654918 [CCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAAATGGAGATATTATGTCTTCCCGTCTTTCCTGCCTATGTGTCGGGGTATTAAACTTCGTGCTTTACTAAAGGCACTAGGAACAAACACAGTCCAGAAGCATTCAGTTTGAAAAATAAAATGATAATAAAATCTTCCAATACTACAAAAATAAATAAACACTCATGATTCGGTTCATCAATTACTGGAATCAATTTTGAATTATGTTTGCGTCCTTTCTTGTTTAAAAATCCTCTAAATCTTTATTCCTTATTGGAAATACTATTGTAATGTTAAACAGTAAGTAGCAAATATAAGCGCCACTGTTTGTAATCTAACAGATTTCCGTACAGACACATTCCACAAAGGGCAAAAATATAACACAAAAATTGTAAAAATATTATAATATGTAAGCTAGTGCTTAAAAATATGTATGATTCATTCTTCTGTAGGTTAAATAATAGCCTCTCTATTTTCTCGCTTACCTTCGCTCACTTTTGTATCTGTTTCGGTGAGATGATATGTATTTATAATAACAATGAGCGTGTAAAGGTCTAGTTTTACTAGCTTGTAAGTACAATACAGGAAGGCCAGCATACATCCTTATTGTAGCGGCTTTGGCCTCTAAGCCGAGAAAGCAGTTTCATACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3053#0 AGGTTATCCGTGGAATTTGTTTTCCACCAGTACGAGGGCACCCTGTTACCGCGAACGGTT 60
consensus_3053#1 ---------CCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAAAATGGA- 50
**** * ** * ** *** * * ** **
consensus_3053#0 AGCAGTTTGTCAGCTACTTCAGGCAGCAAACCAACGCGCGATCCTGCAATCCAC-CTAGG 119
consensus_3053#1 GATATTATGTCTTCCCGTCTTTCCTGCCTATGTGT-CGGGGTATTAAACTTCGTGCTTTA 109
* * **** * * * ** * ** * * * * * * **
consensus_3053#0 CGGCAAACGCGTGTAGCCAAAGTAACGCCGACCGGGCGGCAAAATTGCATTATCATAAAG 179
consensus_3053#1 CTAAAGGCACTAGGAACAAACACAGTCCAGA---AGCATTCAGTTTGAAAAAT----AAA 162
* * * * * * * ** * * ** ** * *** * ** **
consensus_3053#0 CCAATCTCAAAATTTGCCATT--TTCAACCTTTCACCAAGATTGCACGGATTTGGTCATC 237
consensus_3053#1 ATGATAATAAAATCTTCCAATACTACAAAAATAAATAAACACT-CATGATTCGGTTCATC 221
** ***** * *** * * *** * * ** * * ** * * * *****
consensus_3053#0 TTTCGCGAAGCACACTTCCCTCATAAGCATGGGGTATCCGTTTCGCAACCCAACCGTACT 297
consensus_3053#1 AATTACTGGAATCAATTTTGAATTATGTTTGCGTCCTTTCTTGTTTAA-------AAATC 274
* * ** ** ** * ** * * ** ** *
consensus_3053#0 CTTCGAGGTTCTTTNTTTCCTTCATTTTACCGTCATCGACGTTGTCGGTGGGGCCATACA 357
consensus_3053#1 CTCTAAATCTTTATTCCTTATTGGAAATACTATTGTAATGTTAAACAGTAAG--TAGCAA 332
** * * * * * ** *** * * * * ** * * *
consensus_3053#0 TTGTCTGCTCATGCATTTCAAATTCTAGCGATTACTGTAGAAGGG-ACCCTTTNNNGTGC 416
consensus_3053#1 ATATAAGCGCCACTGTTTGTAATCTAACAGATTTCCGTACAGACACATTCCACAAAGGGC 392
* * ** * *** *** * **** * *** * * * * **
consensus_3053#0 AATAATGAAAGTGGTCGCGGAAACTTTTACTATCTGGTCACTCTGCATCTCTACATTAAA 476
consensus_3053#1 AAAAATATAA-----CACAAAAATTGTAAAAATATTATAA-TATGTAAGCTAGTGCTTAA 446
** *** ** * * *** * * * ** * * * * ** * * **
consensus_3053#0 ATGGAGATATTATGTCTTACCCGTCTTTCCTGCCTATGTGTCAGGGTATTAAACTTCGTG 536
consensus_3053#1 AAATATGTATGAT---TCATTCTTCTGTA--GGTTAAATAATAGCCTCTCTATTTTCTCG 501
* * *** ** * * * *** * * ** * ** * * * *** *
consensus_3053#0 CTTTACTAAAGGCACTA--GGAACAAACACAGTCCAGAAGCATTTCAGTTTGAAATCTAA 594
consensus_3053#1 CTTACCTTCGCTCACTTTTGTATCTGTTTCGGTGAGATGATATGTATTTATAATAACAAT 561
*** ** **** * * * * ** ** * * * * * * *
consensus_3053#0 AACTGCATAATAAAAT--CTNTACCAATACTACAAAAATAACATAAACACGCATGATTCG 652
consensus_3053#1 GAGCGTGTAAAGGTCTAGTTTTACTAGC-TTGTAAGTACAATACAGGAAGGCCAGCATAC 620
* * *** * * *** * * ** * ** * * * ** * *
consensus_3053#0 GTTCATCAATTACTGGAATCAATANTGAACTTATGTACNGCGTCCTNTACTAGTCTAACA 712
consensus_3053#1 ATCCTTATTGTAGCGGCTTTGGCCTCTAAGCCGAGAAAGCAGTTTCATACAG-------- 672
* * * ** ** * ** * * ** ***
consensus_3053#0 AATCCTCTAAATCTTTATTCCTT 735
consensus_3053#1 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||