cluster # 3058

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3058 cluster # 3058 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3058#0 length = 461 sequences # 1

consensus_3058#1 length = 397 sequences # 1

consensusID : consensus_3058#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [AATCCCCCGAGGTTAAGTGTTTTGGCGCTGTATCATTAACGCGCTGTTCCATTCGATGATACTGTTTTGGTTGTCGTACAAGATCTACGAAAAGGATGTCATCTGGAAGAACGGACGCGATGGTGGATATTTAGTGTTAGGCAACATAGTTTACACGTACGTAGTCGTGACGGTGTGCTTGAAGGCGGGTCTTCTTACCAACTCGTGGACCTGGTTGACCCATTGTTCTATTTGGGGCTCGATACTGCTTTGGTTTATATTTATATTCATTTACAGCAACATTTGGCCAGCATTACCAGTGGGTGCGGTTTTCACGGGCATGGACGATATGGTCTTTACGACGCCAGTGTTCTGGGCTGGACTACTGTTAATTCCACTATCCGCACTGCTTTTCGACGTGTCTTGGAACGCGTACAGAAACTCTAGAAAGGATAATATACTAACACCACCACTGAAGGAAT]

[+] EMBL AL932265             [AATCCCCCGAGGTTAAGTGTTTTGGCGCTGTATCATTAACGCGCTGTTCCATTCGATGATACTGTTTTGGTTGTCGTACAAGATCTACGAAAAGGATGTCATCTGGAAGAACGGACGCGATGGTGGATATTTAGTGTTAGGCAACATAGTTTACACGTACGTAGTCGTGACGGTGTGCTTGAAGGCGGGTCTTCTTACCAACTCGTGGACCTGGTTGACCCATTGTTCTATTTGGGGCTCGATACTGCTTTGGTTTATATTTATATTCATTTACAGCAACATTTGGCCAGCATTACCAGTGGGTGCGGTTTTCACGGGCATGGACGATATGGTCTTTACGACGCCAGTGTTCTGGGCTGGACTACTGTTAATTCCACTATCCGCACTGCTTTTCGACGTGTCTTGGAACGCGTACAGAAACTCTAGAAAGGATAATATACTAACACCACCACTGAAGGAAT]




>consensus_3058#0
AATCCCCCGAGGTTAAGTGTTTTGGCGCTGTATCATTAACGCGCTGTTCCATTCGATGAT
ACTGTTTTGGTTGTCGTACAAGATCTACGAAAAGGATGTCATCTGGAAGAACGGACGCGA
TGGTGGATATTTAGTGTTAGGCAACATAGTTTACACGTACGTAGTCGTGACGGTGTGCTT
GAAGGCGGGTCTTCTTACCAACTCGTGGACCTGGTTGACCCATTGTTCTATTTGGGGCTC
GATACTGCTTTGGTTTATATTTATATTCATTTACAGCAACATTTGGCCAGCATTACCAGT
GGGTGCGGTTTTCACGGGCATGGACGATATGGTCTTTACGACGCCAGTGTTCTGGGCTGG
ACTACTGTTAATTCCACTATCCGCACTGCTTTTCGACGTGTCTTGGAACGCGTACAGAAA
CTCTAGAAAGGATAATATACTAACACCACCACTGAAGGAAT

consensusID : consensus_3058#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [GCTCAGCAGAATCGCCACGAGGTCTATNGTGGATATTTAGTGTTAGGCCAACATAGTTTACACGTACGTAGTCGTGACGGTGTGCTTGAAGGCGGGTCTTCTTACCAACTCGTGGACCTGGTTGACCCATTGTTCTATTTGGGGCTCGATACTGCTTTGGTTTATATTTATATTCATTTACAGCAACATTTGGCCAGCATTACCAGTGGGTGCGGTTTTCACGGGCATGGACGATATGGTCTTTACGACGCCAGTGTTCTGGGCTGGACTACTGTGTAATTCCAGCTATCCGCACTGCTTTTCGACGTGTCTTGGAACGCGTACAGAAACTCTAGAAAGGATAATATACTAACACCAGNCGACTGAAGGAATCCAGATCTTCAGAGACCGAAGGCAT]

[+] EMBL BX466464             [GCTCAGCAGAATCGCCACGAGGTCTATNGTGGATATTTAGTGTTAGGCCAACATAGTTTACACGTACGTAGTCGTGACGGTGTGCTTGAAGGCGGGTCTTCTTACCAACTCGTGGACCTGGTTGACCCATTGTTCTATTTGGGGCTCGATACTGCTTTGGTTTATATTTATATTCATTTACAGCAACATTTGGCCAGCATTACCAGTGGGTGCGGTTTTCACGGGCATGGACGATATGGTCTTTACGACGCCAGTGTTCTGGGCTGGACTACTGTGTAATTCCAGCTATCCGCACTGCTTTTCGACGTGTCTTGGAACGCGTACAGAAACTCTAGAAAGGATAATATACTAACACCAGNCGACTGAAGGAATCCAGATCTTCAGAGACCGAAGGCAT]




>consensus_3058#1
GCTCAGCAGAATCGCCACGAGGTCTATNGTGGATATTTAGTGTTAGGCCAACATAGTTTA
CACGTACGTAGTCGTGACGGTGTGCTTGAAGGCGGGTCTTCTTACCAACTCGTGGACCTG
GTTGACCCATTGTTCTATTTGGGGCTCGATACTGCTTTGGTTTATATTTATATTCATTTA
CAGCAACATTTGGCCAGCATTACCAGTGGGTGCGGTTTTCACGGGCATGGACGATATGGT
CTTTACGACGCCAGTGTTCTGGGCTGGACTACTGTGTAATTCCAGCTATCCGCACTGCTT
TTCGACGTGTCTTGGAACGCGTACAGAAACTCTAGAAAGGATAATATACTAACACCAGNC
GACTGAAGGAATCCAGATCTTCAGAGACCGAAGGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3058#0      AATCCCCCGAGGTTAAGTGTTTTGGCGCTGTATCATTAACGCGCTGTTCCATTCGATGAT 60
consensus_3058#1      ------------------------------------------------------------
                                                                                  

consensus_3058#0      ACTGTTTTGGTTGTCGTACAAGATCTACGAAAAGGATGTCATCTGGAAGA--ACGGACGC 118
consensus_3058#1      ------------------------------------GCTCAGCAGAATCGCCACGAGGTC 24
                                                            *** * * *     ***    *

consensus_3058#0      GATGGTGGATATTTAGTGTTAGGC-AACATAGTTTACACGTACGTAGTCGTGACGGTGTG 177
consensus_3058#1      TATNGTGGATATTTAGTGTTAGGCCAACATAGTTTACACGTACGTAGTCGTGACGGTGTG 84
                       ** ******************** ***********************************

consensus_3058#0      CTTGAAGGCGGGTCTTCTTACCAACTCGTGGACCTGGTTGACCCATTGTTCTATTTGGGG 237
consensus_3058#1      CTTGAAGGCGGGTCTTCTTACCAACTCGTGGACCTGGTTGACCCATTGTTCTATTTGGGG 144
                      ************************************************************

consensus_3058#0      CTCGATACTGCTTTGGTTTATATTTATATTCATTTACAGCAACATTTGGCCAGCATTACC 297
consensus_3058#1      CTCGATACTGCTTTGGTTTATATTTATATTCATTTACAGCAACATTTGGCCAGCATTACC 204
                      ************************************************************

consensus_3058#0      AGTGGGTGCGGTTTTCACGGGCATGGACGATATGGTCTTTACGACGCCAGTGTTCTGGGC 357
consensus_3058#1      AGTGGGTGCGGTTTTCACGGGCATGGACGATATGGTCTTTACGACGCCAGTGTTCTGGGC 264
                      ************************************************************

consensus_3058#0      TGGACTACTGT-TAATTCCA-CTATCCGCACTGCTTTTCGACGTGTCTTGGAACGCGTAC 415
consensus_3058#1      TGGACTACTGTGTAATTCCAGCTATCCGCACTGCTTTTCGACGTGTCTTGGAACGCGTAC 324
                      *********** ******** ***************************************

consensus_3058#0      AGAAACTCTAGAAAGGATAATATACTAACACCACC--ACTGAAGGAAT------------ 461
consensus_3058#1      AGAAACTCTAGAAAGGATAATATACTAACACCAGNCGACTGAAGGAATCCAGATCTTCAG 384
                      *********************************    ***********            

consensus_3058#0      -------------
consensus_3058#1      AGACCGAAGGCAT 397