cluster # 3068

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Anopheles gambiae
cluster # 3068 cluster # 3068 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3068#0 length = 691 sequences # 1

consensus_3068#1 length = 634 sequences # 1

consensusID : consensus_3068#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [CCGCGGACGCGTGGGCGCGCTTGCCGGGATTACGACCAATCGAAAACTGAAAAAAGGAAACCAACCACAAGATGTTCTAATTAAGTTTTGCAAACACGTGAACCATAAACCACTCTTCTTGTCTGCCGGCTTGCTGCACGCCGTCAAACAACCGCTGCTGCCGCAATAAAACGGGCACTTTTGGGGTACGGCGGCAAGCAAATGGCCCTCCACTCGCATAAAACGGACCCGCGGTCTCTGATCTCCGATAACACCTCAATGTTCCGATGGTTTGTAGTAGCCCGATCACACTTTAGGAAGATCCGCAGCGTGATCGTAAACGTTTGGGGAGCGGATTTTTTGCCCCCACTCTGATTTTTTGGATGTCTTCAACTTACCTTGGAATGGCAGTCAGGTACCGTTTCGTTTCTTTTTTGCCAGACACAGCGATACAACGCTCCTGATAAGCGGTTGATTCAGCTGATCTTCAGAAGGTTGTCTTCGGTTGTGCTCTGGAGAGGGAAATTGCACAGACAAGAAAAAAAGAAGCGTGGCAATTAAACATGAACACGGAGACAGAAAGCGTGGTTGTGAGGACTTACCAACCAACAAGCTTGCTCGATTCTGGATGAAAGATACCACCAGCCGTTAGCCCAATAGGCAATAGGGGAATTCTGGAGGAGAAAGAGCAAAGCAAAGGGGGAAAACTGAA]

[+] EMBL BM629167             [CCGCGGACGCGTGGGCGCGCTTGCCGGGATTACGACCAATCGAAAACTGAAAAAAGGAAACCAACCACAAGATGTTCTAATTAAGTTTTGCAAACACGTGAACCATAAACCACTCTTCTTGTCTGCCGGCTTGCTGCACGCCGTCAAACAACCGCTGCTGCCGCAATAAAACGGGCACTTTTGGGGTACGGCGGCAAGCAAATGGCCCTCCACTCGCATAAAACGGACCCGCGGTCTCTGATCTCCGATAACACCTCAATGTTCCGATGGTTTGTAGTAGCCCGATCACACTTTAGGAAGATCCGCAGCGTGATCGTAAACGTTTGGGGAGCGGATTTTTTGCCCCCACTCTGATTTTTTGGATGTCTTCAACTTACCTTGGAATGGCAGTCAGGTACCGTTTCGTTTCTTTTTTGCCAGACACAGCGATACAACGCTCCTGATAAGCGGTTGATTCAGCTGATCTTCAGAAGGTTGTCTTCGGTTGTGCTCTGGAGAGGGAAATTGCACAGACAAGAAAAAAAGAAGCGTGGCAATTAAACATGAACACGGAGACAGAAAGCGTGGTTGTGAGGACTTACCAACCAACAAGCTTGCTCGATTCTGGATGAAAGATACCACCAGCCGTTAGCCCAATAGGCAATAGGGGAATTCTGGAGGAGAAAGAGCAAAGCAAAGGGGGAAAACTGAA]




>consensus_3068#0
CCGCGGACGCGTGGGCGCGCTTGCCGGGATTACGACCAATCGAAAACTGAAAAAAGGAAA
CCAACCACAAGATGTTCTAATTAAGTTTTGCAAACACGTGAACCATAAACCACTCTTCTT
GTCTGCCGGCTTGCTGCACGCCGTCAAACAACCGCTGCTGCCGCAATAAAACGGGCACTT
TTGGGGTACGGCGGCAAGCAAATGGCCCTCCACTCGCATAAAACGGACCCGCGGTCTCTG
ATCTCCGATAACACCTCAATGTTCCGATGGTTTGTAGTAGCCCGATCACACTTTAGGAAG
ATCCGCAGCGTGATCGTAAACGTTTGGGGAGCGGATTTTTTGCCCCCACTCTGATTTTTT
GGATGTCTTCAACTTACCTTGGAATGGCAGTCAGGTACCGTTTCGTTTCTTTTTTGCCAG
ACACAGCGATACAACGCTCCTGATAAGCGGTTGATTCAGCTGATCTTCAGAAGGTTGTCT
TCGGTTGTGCTCTGGAGAGGGAAATTGCACAGACAAGAAAAAAAGAAGCGTGGCAATTAA
ACATGAACACGGAGACAGAAAGCGTGGTTGTGAGGACTTACCAACCAACAAGCTTGCTCG
ATTCTGGATGAAAGATACCACCAGCCGTTAGCCCAATAGGCAATAGGGGAATTCTGGAGG
AGAAAGAGCAAAGCAAAGGGGGAAAACTGAA

consensusID : consensus_3068#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [GACCGCGGACTCTGCTCTCCGATACACCTCAATGTTCCGATGGTTTGTACGTAGCCCGATCACACTTTAGGAAGATCCGCAGCGTGATCGTAAACGTTTGGGGAGCGGATTTTTTTGCCCCCACTCCGATATTTGTGTATGTCTATCAACTTACCTTGTAAATGGCAGTCAGGTACCGTTTCGTTTCTTTTCTTTTNTTCGCCAGACACAGCGATACCACGCTCCTGATAAGCGGTTGATTCAGCTGATCTTCAGAAGGTTGTCTTCGCGAGGTTGTGCTCTGGAGAGGGAAATTGCACAGAAAACGAACACAAACAGAAGCGTGGCAATTAACACATGAACACGGAGACAGAAAGCGCGGTTGTGAGGACTTACCAACCAACAGGCTTGGTCGATGCTGGAGATACGAATGCCGATTCTGGATGTAACGATACCACCAGCCGTTAGCCCAATAGGCAATAAGGGGAATTCTAGAGGAGAAAGAGCAAACGCAAACAGGGAANAACTGAANATACATTATCACAATTAAAACAATCCTACATCACGCCACACGCACGCTGTTACNANATTAGCCTACCAATATCTATGAGATCACAAACATCAGAAACACACACCACATGGCACATGACGGTCC]

[+] EMBL AL933527             [GACCGCGGACTCTGCTCTCCGATACACCTCAATGTTCCGATGGTTTGTACGTAGCCCGATCACACTTTAGGAAGATCCGCAGCGTGATCGTAAACGTTTGGGGAGCGGATTTTTTTGCCCCCACTCCGATATTTGTGTATGTCTATCAACTTACCTTGTAAATGGCAGTCAGGTACCGTTTCGTTTCTTTTCTTTTNTTCGCCAGACACAGCGATACCACGCTCCTGATAAGCGGTTGATTCAGCTGATCTTCAGAAGGTTGTCTTCGCGAGGTTGTGCTCTGGAGAGGGAAATTGCACAGAAAACGAACACAAACAGAAGCGTGGCAATTAACACATGAACACGGAGACAGAAAGCGCGGTTGTGAGGACTTACCAACCAACAGGCTTGGTCGATGCTGGAGATACGAATGCCGATTCTGGATGTAACGATACCACCAGCCGTTAGCCCAATAGGCAATAAGGGGAATTCTAGAGGAGAAAGAGCAAACGCAAACAGGGAANAACTGAANATACATTATCACAATTAAAACAATCCTACATCACGCCACACGCACGCTGTTACNANATTAGCCTACCAATATCTATGAGATCACAAACATCAGAAACACACACCACATGGCACATGACGGTCC]




>consensus_3068#1
GACCGCGGACTCTGCTCTCCGATACACCTCAATGTTCCGATGGTTTGTACGTAGCCCGAT
CACACTTTAGGAAGATCCGCAGCGTGATCGTAAACGTTTGGGGAGCGGATTTTTTTGCCC
CCACTCCGATATTTGTGTATGTCTATCAACTTACCTTGTAAATGGCAGTCAGGTACCGTT
TCGTTTCTTTTCTTTTNTTCGCCAGACACAGCGATACCACGCTCCTGATAAGCGGTTGAT
TCAGCTGATCTTCAGAAGGTTGTCTTCGCGAGGTTGTGCTCTGGAGAGGGAAATTGCACA
GAAAACGAACACAAACAGAAGCGTGGCAATTAACACATGAACACGGAGACAGAAAGCGCG
GTTGTGAGGACTTACCAACCAACAGGCTTGGTCGATGCTGGAGATACGAATGCCGATTCT
GGATGTAACGATACCACCAGCCGTTAGCCCAATAGGCAATAAGGGGAATTCTAGAGGAGA
AAGAGCAAACGCAAACAGGGAANAACTGAANATACATTATCACAATTAAAACAATCCTAC
ATCACGCCACACGCACGCTGTTACNANATTAGCCTACCAATATCTATGAGATCACAAACA
TCAGAAACACACACCACATGGCACATGACGGTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3068#0      CCGCGGACGCGTGGGCGCGCTTGCCGGGATTACGACCAATCGAAAACTGAAAAAAGGAAA 60
consensus_3068#1      ------------------------------------------------------------
                                                                                  

consensus_3068#0      CCAACCACAAGATGTTCTAATTAAGTTTTGCAAACACGTGAACCATAAACCACTCTTCTT 120
consensus_3068#1      ------------------------------------------------------------
                                                                                  

consensus_3068#0      GTCTGCCGGCTTGCTGCACGCCGTCAAACAACCGCTGCTGCCGCAATAAAACGGGCACTT 180
consensus_3068#1      ------------------------------------------------------------
                                                                                  

consensus_3068#0      TTGGGGTACGGCGGCAAGCAAATGGCCCTCCACTCGCATAAAACGGACCCGCGGTCTCTG 240
consensus_3068#1      ----------------------------------------------GACCGCGGACTCTG 14
                                                                      ****** *****

consensus_3068#0      ATCTCCGATAACACCTCAATGTTCCGATGGTTTGTA-GTAGCCCGATCACACTTTAGGAA 299
consensus_3068#1      CTCTCCGATA-CACCTCAATGTTCCGATGGTTTGTACGTAGCCCGATCACACTTTAGGAA 73
                       ********* ************************* ***********************

consensus_3068#0      GATCCGCAGCGTGATCGTAAACGTTTGGGGAGCGGATTTTTT-GCCCCCACTCTGATTTT 358
consensus_3068#1      GATCCGCAGCGTGATCGTAAACGTTTGGGGAGCGGATTTTTTTGCCCCCACTCCGATATT 133
                      ****************************************** ********** *** **

consensus_3068#0      T-TGGATGTCT-TCAACTTACCTTG-GAATGGCAGTCAGGTACCGTTTCGTTTCTTTTTT 415
consensus_3068#1      TGTGTATGTCTATCAACTTACCTTGTAAATGGCAGTCAGGTACCGTTTCGTTTCTTTTCT 193
                      * ** ****** *************  ******************************* *

consensus_3068#0      -------GCCAGACACAGCGATACAACGCTCCTGATAAGCGGTTGATTCAGCTGATCTTC 468
consensus_3068#1      TTTNTTCGCCAGACACAGCGATACCACGCTCCTGATAAGCGGTTGATTCAGCTGATCTTC 253
                             ***************** ***********************************

consensus_3068#0      AGAAGGTTGTCTTCG----GTTGTGCTCTGGAGAGGGAAATTGCACAGACAAGAAA---- 520
consensus_3068#1      AGAAGGTTGTCTTCGCGAGGTTGTGCTCTGGAGAGGGAAATTGCACAGAAAACGAACACA 313
                      ***************    ****************************** **  **    

consensus_3068#0      AAAAGAAGCGTGGCAATTAA-ACATGAACACGGAGACAGAAAGCGTGGTTGTGAGGACTT 579
consensus_3068#1      AACAGAAGCGTGGCAATTAACACATGAACACGGAGACAGAAAGCGCGGTTGTGAGGACTT 373
                      ** ***************** ************************ **************

consensus_3068#0      ACCAACCAACAAGCTTGCTCGAT---------------------TCTGGATGAAA-GATA 617
consensus_3068#1      ACCAACCAACAGGCTTGGTCGATGCTGGAGATACGAATGCCGATTCTGGATGTAACGATA 433
                      *********** ***** *****                     ******** ** ****

consensus_3068#0      CCACCAGCCGTTAGCCCAATAGGCAATA-GGGGAATTCTGGAGGAGAAAGAGCAAA-GCA 675
consensus_3068#1      CCACCAGCCGTTAGCCCAATAGGCAATAAGGGGAATTCTAGAGGAGAAAGAGCAAACGCA 493
                      **************************** ********** **************** ***

consensus_3068#0      AA-GGGGGAAAACTGAA------------------------------------------- 691
consensus_3068#1      AACAGGGAANAACTGAANATACATTATCACAATTAAAACAATCCTACATCACGCCACACG 553
                      **  *** * *******                                           

consensus_3068#0      ------------------------------------------------------------
consensus_3068#1      CACGCTGTTACNANATTAGCCTACCAATATCTATGAGATCACAAACATCAGAAACACACA 613
                                                                                  

consensus_3068#0      ---------------------
consensus_3068#1      CCACATGGCACATGACGGTCC 634